mRNA_S-ischiensis_contig10.1657.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1657.1
Unique NamemRNA_S-ischiensis_contig10.1657.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3544746..3545546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.7221143-CDS-S-ischiensis_contig10:3544745..35448441622815500.7221143-CDS-S-ischiensis_contig10:3544745..3544844Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3544746..3544844 +
1695739736.8270428-CDS-S-ischiensis_contig10:3544745..35448441695739736.8270428-CDS-S-ischiensis_contig10:3544745..3544844Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3544746..3544844 +
1622815500.732705-CDS-S-ischiensis_contig10:3545167..35455451622815500.732705-CDS-S-ischiensis_contig10:3545167..3545545Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3545168..3545545 +
1695739736.8369896-CDS-S-ischiensis_contig10:3545167..35455451695739736.8369896-CDS-S-ischiensis_contig10:3545167..3545545Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3545168..3545545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1657.1prot_S-ischiensis_contig10.1657.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3544746..3545545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1657.1

>prot_S-ischiensis_contig10.1657.1 ID=prot_S-ischiensis_contig10.1657.1|Name=mRNA_S-ischiensis_contig10.1657.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=159bp
AAVAAGALNLEEVVARQMAEVAQAVARQLEDIEAIERGPGEPAGGTAAGG
AEEAQHQEEEDKEEDGKQETGPRGMSAGGEAEGHGGSVPSPGRAGERIPG
EFGGGGEAPERQAGGGEGPDGEDNPGRVVVSPGDASAIGAGGEEPAQNAS
AVEVAAGDR
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mRNA from alignment at S-ischiensis_contig10:3544746..3545546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1657.1 ID=mRNA_S-ischiensis_contig10.1657.1|Name=mRNA_S-ischiensis_contig10.1657.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=801bp|location=Sequence derived from alignment at S-ischiensis_contig10:3544746..3545546+ (Schizocladia ischiensis KU_0333)
GCAGCGGTGGCAGCGGGAGCACTGAACCTGGAGGAGGTGGTGGCACGGCA
GATGGCGGAGGTGGCGCAGGCCGTCGCCCGGCAGCTCGAGGACATAGAGG
TGGGCATGGTTAGGGGCAATTTGAGGTAGAGGTATCCTCGTGCTCCTTCT
CCTCCCCTGTGATGGAATATCTAAGCAAATCAACGTATTTATCGACAGGA
CTGACCTATATATCTATCGATGGTCGATATTCGATAGTTTGACCCACACT
AAATCCAAGTAGCTAAGTAATGCCACCCACAAAATCAGTCGAGCACGACA
ACATCTACTGATGGATATTCCATCGCTGCTCCTCCCACCACCACCACCAC
CACCACCTCCACCGCCACCCAGCGGCCAAAACTGATCTACAACACTCTGA
CCATTTCCCTTCCCCTGCGCAGGCCATAGAGCGCGGCCCGGGTGAGCCCG
CTGGTGGCACCGCCGCGGGGGGGGCGGAGGAGGCGCAGCATCAGGAGGAG
GAGGACAAGGAGGAGGACGGCAAGCAGGAGACCGGGCCCCGGGGCATGAG
TGCAGGCGGGGAGGCAGAGGGGCACGGTGGCAGTGTCCCATCCCCAGGCC
GTGCCGGGGAGCGAATTCCTGGGGAGTTTGGAGGAGGGGGAGAGGCCCCA
GAGAGGCAGGCGGGCGGGGGCGAAGGCCCCGATGGCGAGGACAACCCCGG
CCGTGTCGTGGTTTCACCTGGGGACGCCAGTGCCATAGGAGCAGGGGGGG
AGGAACCGGCCCAGAACGCGTCGGCGGTTGAGGTGGCGGCAGGCGACCGG
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3544746..3545546+

>mRNA_S-ischiensis_contig10.1657.1 ID=mRNA_S-ischiensis_contig10.1657.1|Name=mRNA_S-ischiensis_contig10.1657.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=954bp|location=Sequence derived from alignment at S-ischiensis_contig10:3544746..3545546+ (Schizocladia ischiensis KU_0333)
GCAGCGGTGGCAGCGGGAGCACTGAACCTGGAGGAGGTGGTGGCACGGCA
GATGGCGGAGGTGGCGCAGGCCGTCGCCCGGCAGCTCGAGGACATAGAGG
CAGCGGTGGCAGCGGGAGCACTGAACCTGGAGGAGGTGGTGGCACGGCAG
ATGGCGGAGGTGGCGCAGGCCGTCGCCCGGCAGCTCGAGGACATAGAGGC
CATAGAGCGCGGCCCGGGTGAGCCCGCTGGTGGCACCGCCGCGGGGGGGG
CGGAGGAGGCGCAGCATCAGGAGGAGGAGGACAAGGAGGAGGACGGCAAG
CAGGAGACCGGGCCCCGGGGCATGAGTGCAGGCGGGGAGGCAGAGGGGCA
CGGTGGCAGTGTCCCATCCCCAGGCCGTGCCGGGGAGCGAATTCCTGGGG
AGTTTGGAGGAGGGGGAGAGGCCCCAGAGAGGCAGGCGGGCGGGGGCGAA
GGCCCCGATGGCGAGGACAACCCCGGCCGTGTCGTGGTTTCACCTGGGGA
CGCCAGTGCCATAGGAGCAGGGGGGGAGGAACCGGCCCAGAACGCGTCGG
CGGTTGAGGTGGCGGCAGGCGACCGGGCCATAGAGCGCGGCCCGGGTGAG
CCCGCTGGTGGCACCGCCGCGGGGGGGGCGGAGGAGGCGCAGCATCAGGA
GGAGGAGGACAAGGAGGAGGACGGCAAGCAGGAGACCGGGCCCCGGGGCA
TGAGTGCAGGCGGGGAGGCAGAGGGGCACGGTGGCAGTGTCCCATCCCCA
GGCCGTGCCGGGGAGCGAATTCCTGGGGAGTTTGGAGGAGGGGGAGAGGC
CCCAGAGAGGCAGGCGGGCGGGGGCGAAGGCCCCGATGGCGAGGACAACC
CCGGCCGTGTCGTGGTTTCACCTGGGGACGCCAGTGCCATAGGAGCAGGG
GGGGAGGAACCGGCCCAGAACGCGTCGGCGGTTGAGGTGGCGGCAGGCGA
CCGG
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