mRNA_S-ischiensis_contig10.1652.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1652.1
Unique NamemRNA_S-ischiensis_contig10.1652.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3473427..3475273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size758
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1652.1prot_S-ischiensis_contig10.1652.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3473618..3475153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.6385994-UTR-S-ischiensis_contig10:3473426..34736171622815500.6385994-UTR-S-ischiensis_contig10:3473426..3473617Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3473427..3473617 +
1695739736.7877584-UTR-S-ischiensis_contig10:3473426..34736171695739736.7877584-UTR-S-ischiensis_contig10:3473426..3473617Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3473427..3473617 +
1622815500.6870348-UTR-S-ischiensis_contig10:3475153..34752731622815500.6870348-UTR-S-ischiensis_contig10:3475153..3475273Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3475154..3475273 +
1695739736.8176959-UTR-S-ischiensis_contig10:3475153..34752731695739736.8176959-UTR-S-ischiensis_contig10:3475153..3475273Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3475154..3475273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.6534712-CDS-S-ischiensis_contig10:3473617..34739201622815500.6534712-CDS-S-ischiensis_contig10:3473617..3473920Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3473618..3473920 +
1695739736.7993443-CDS-S-ischiensis_contig10:3473617..34739201695739736.7993443-CDS-S-ischiensis_contig10:3473617..3473920Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3473618..3473920 +
1622815500.6731842-CDS-S-ischiensis_contig10:3475009..34751531622815500.6731842-CDS-S-ischiensis_contig10:3475009..3475153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3475010..3475153 +
1695739736.8087502-CDS-S-ischiensis_contig10:3475009..34751531695739736.8087502-CDS-S-ischiensis_contig10:3475009..3475153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3475010..3475153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1652.1

>prot_S-ischiensis_contig10.1652.1 ID=prot_S-ischiensis_contig10.1652.1|Name=mRNA_S-ischiensis_contig10.1652.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
MINVVTKRCVLDGCTNLANYARAGTKTPMFCGHHNLTGLVDIRNPRCQAE
GCSVCARFAFPGSRRPQYCSKHKGAGMVAVIGRRCRHPDCERQPSYGYAG
EVTTLYCAQHKLAGMVDVKHRTQRKKAAVRAAKNREAAREATDRADPA*
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mRNA from alignment at S-ischiensis_contig10:3473427..3475273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1652.1 ID=mRNA_S-ischiensis_contig10.1652.1|Name=mRNA_S-ischiensis_contig10.1652.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1847bp|location=Sequence derived from alignment at S-ischiensis_contig10:3473427..3475273+ (Schizocladia ischiensis KU_0333)
AACTACCCCAGGCCACACTGGCGGGCCCTGATGCGCTGGGTGACTGGGCA
GACCAGTTCCCCGCCCCTCCCCCAAAGAGGGCGAACCGCCGGGGCCCACG
GCAGTGCGGGGAAACGGACTGCCCCCGCGCCCCCAGCTACGGGCGGCCGG
ACGAGAGGGCAGAGCGCTGCGCCCGGCACCGGCTCCCGGGCATGATCAAC
GTGGTGACCAAGCGCTGTGTCCTGGACGGCTGCACCAACCTGGCCAACTA
TGCCCGCGCGGGCACCAAGACGCCCATGTTCTGCGGCCACCACAACCTGA
CCGGGCTGGTGGACATCCGCAATCCCCGTTGCCAGGCCGAGGGCTGCAGC
GTCTGCGCCCGGTTCGCCTTCCCCGGCTCGCGGCGCCCCCAGTACTGCTC
CAAGCACAAGGGGGCCGGCATGGTGGCCGTCATCGGGCGGCGGTGCCGGC
ACCCGGACTGCGAGAGGCAGCCGAGCTACGGCTACGCGGGGGAGGTGAGT
GGACCGGCAGGGAACGAACGCCTTGTGGGGTGATTTGCGGTGGTGTGGTG
AGGCGCTTGGTCAATGTTCTCGGGACTACGGCAGGCACAACGTGAGTACA
TACGTAGTATATATGAGGTGCGTGGTCAATGGTCTCGAGACTACGGCAGG
CACAACGTGAGTACATGCGTCTATATGAGGCGCGTGGTCGATGGTCTCGG
GACTACGGCAAGCACCATTTGAGTACATATGTATATACATGGTTGTGATG
GCTGATGTTGCGGCTTCTGTATACTCGACGCAGCGAGGGTTTTGGGCCAA
ACTGGGCAGCGCTAGTGGGGCTTGAGTGCTGCCTGCCTGCAGCCGCGACT
GCCCTCGGTTGAAACCTATTTCGCCAATTCATGGACATCCGTCTCGGCCG
CTGCGCCGAGTTGGGCCACGACCCACGATCGCGCGCGGAAGGCGTTGGCT
TTCTCGTATTGGCCGCGCCTGCAACCGCATGGAGGACGCGCAAGCACGCT
GCGATGCACCGGAAGGATGCACTGTATATTGACTTTTCGGGCCCGGGAAA
TTGCCATCTCGGGCCGGAGGAAGAGTTGGACCGAAACGTGGCTCAGCGGT
GCACTCAAGGCAGCAAAAACAGGCAGCGCCTCCGAGTTTGGGGCTGACAA
CTCTTACGGCATTCCGGCGTGAGTACTGCCCCTCTTTACCTCGTGTTTGG
TCCACATGCCTTGATTGCTGTCGAGGGCCTGAGCAGCACCCCAAAAGTTA
CTGTTTCGGTAAGTTAAGCGCATCGATGGTGCGTCGCCCCCCCGTGCATG
CTTTGAAGCACAGTGCTTACTTCGAAAAGCGCGGCGTCTGCCAGGCGCTG
TTGATTCCGTGGCCGGAGGAACGAATCGTGTGATTCCTGCGTGGCACCTA
CTGTCTTTCCCTGTTCGTATCTGACTGCATTTACAGGTAGTAATTCGTGA
CTGAGCAACAACGATGATCAGTAATGTGAGAATGCGCAGCGGCGGAGCAC
CAACGACGCGACCAGACCGCAGCACCCCACGAACTGAGCAAAATCATCAT
TAGAGCTACCCGTTTGCGCGGCGGCCAAAGCAGGTGACCACGCTCTACTG
CGCGCAGCACAAGCTGGCGGGCATGGTGGACGTCAAGCACCGGACCCAGC
GAAAGAAGGCTGCCGTGCGGGCGGCCAAGAATCGAGAGGCCGCGCGCGAG
GCGACGGACCGGGCTGACCCAGCGTGAGACGTGGGGGACACATCAGTAAC
CCCTGCCGCCCTCACGCCTCCTCTGCCCCCCCTTGAGGCAAAGCGGTGCT
GCCGCTGCCCTCCCGGAACAGGTGGCGGAGTGGGGGAGGGCCCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3473427..3475273+

>mRNA_S-ischiensis_contig10.1652.1 ID=mRNA_S-ischiensis_contig10.1652.1|Name=mRNA_S-ischiensis_contig10.1652.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig10:3473427..3475273+ (Schizocladia ischiensis KU_0333)
ATGATCAACGTGGTGACCAAGCGCTGTGTCCTGGACGGCTGCACCAACCT
GGCCAACTATGCCCGCGCGGGCACCAAGACGCCCATGTTCTGCGGCCACC
ACAACCTGACCGGGCTGGTGGACATCCGCAATCCCCGTTGCCAGGCCGAG
GGCTGCAGCGTCTGCGCCCGGTTCGCCTTCCCCGGCTCGCGGCGCCCCCA
GTACTGCTCCAAGCACAAGGGGGCCGGCATGGTGGCCGTCATCGGGCGGC
GGTGCCGGCACCCGGACTGCGAGAGGCAGCCGAGCTACGGCTACGCGGGG
GAGATGATCAACGTGGTGACCAAGCGCTGTGTCCTGGACGGCTGCACCAA
CCTGGCCAACTATGCCCGCGCGGGCACCAAGACGCCCATGTTCTGCGGCC
ACCACAACCTGACCGGGCTGGTGGACATCCGCAATCCCCGTTGCCAGGCC
GAGGGCTGCAGCGTCTGCGCCCGGTTCGCCTTCCCCGGCTCGCGGCGCCC
CCAGTACTGCTCCAAGCACAAGGGGGCCGGCATGGTGGCCGTCATCGGGC
GGCGGTGCCGGCACCCGGACTGCGAGAGGCAGCCGAGCTACGGCTACGCG
GGGGAGGTGACCACGCTCTACTGCGCGCAGCACAAGCTGGCGGGCATGGT
GGACGTCAAGCACCGGACCCAGCGAAAGAAGGCTGCCGTGCGGGCGGCCA
AGAATCGAGAGGCCGCGCGCGAGGCGACGGACCGGGCTGACCCAGCGTGA
GTGACCACGCTCTACTGCGCGCAGCACAAGCTGGCGGGCATGGTGGACGT
CAAGCACCGGACCCAGCGAAAGAAGGCTGCCGTGCGGGCGGCCAAGAATC
GAGAGGCCGCGCGCGAGGCGACGGACCGGGCTGACCCAGCGTGA
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