mRNA_S-ischiensis_contig10.1651.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1651.1
Unique NamemRNA_S-ischiensis_contig10.1651.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3472694..3473426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size734
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.292343-CDS-S-ischiensis_contig10:3472693..34734251622815506.292343-CDS-S-ischiensis_contig10:3472693..3473425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3472694..3473425 +
1695739738.519465-CDS-S-ischiensis_contig10:3472693..34734251695739738.519465-CDS-S-ischiensis_contig10:3472693..3473425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3472694..3473425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1651.1prot_S-ischiensis_contig10.1651.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3472694..3473425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1651.1

>prot_S-ischiensis_contig10.1651.1 ID=prot_S-ischiensis_contig10.1651.1|Name=mRNA_S-ischiensis_contig10.1651.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=244bp
PIGSPSREAQEGREFRGAPHGPPAGETHGGSGFRGAPLGPPVGEAYRVAG
FRGVPLELPSGEVYVGPGSRGAPLGPPPGDVLPGLGLQGVLLGPPPGEAQ
GGAGFWVPPACPPPREAQGWHGYRGIPLGPAAGEVQWAPPGFWGVPYGPS
SEEAQVDPVFRDAPLGPPSREGPRGPGYRVVPYGPPSGEAHGDPMYRAAP
LGPPSGEGLQIPGLRDLQGFRGVLHGPPPGAPMEQQWKPPPVHP
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mRNA from alignment at S-ischiensis_contig10:3472694..3473426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1651.1 ID=mRNA_S-ischiensis_contig10.1651.1|Name=mRNA_S-ischiensis_contig10.1651.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=733bp|location=Sequence derived from alignment at S-ischiensis_contig10:3472694..3473426+ (Schizocladia ischiensis KU_0333)
CCGATCGGGTCCCCGTCACGAGAGGCGCAGGAGGGGCGGGAGTTCCGAGG
CGCACCACATGGACCGCCTGCTGGAGAGACCCACGGGGGGTCGGGGTTTC
GGGGCGCGCCGCTTGGTCCACCAGTAGGAGAGGCATACAGGGTGGCGGGA
TTCCGGGGCGTACCGCTTGAGCTTCCTTCGGGAGAAGTGTACGTGGGCCC
GGGGTCCCGGGGCGCACCCCTTGGGCCGCCTCCAGGAGATGTACTGCCAG
GGCTGGGACTCCAGGGCGTACTGCTTGGACCGCCGCCAGGAGAGGCACAG
GGGGGGGCGGGGTTCTGGGTCCCACCGGCCTGTCCACCGCCACGAGAGGC
ACAGGGGTGGCACGGCTACCGGGGCATACCCCTTGGGCCCGCTGCAGGAG
AGGTGCAGTGGGCCCCGCCCGGGTTCTGGGGTGTACCTTACGGGCCGTCG
TCGGAGGAGGCGCAGGTGGACCCGGTGTTCCGGGACGCACCGCTTGGGCC
GCCTTCAAGAGAGGGGCCGCGGGGGCCGGGTTATCGGGTTGTGCCTTATG
GGCCACCGTCGGGGGAGGCACATGGGGACCCCATGTACCGGGCCGCACCG
CTTGGGCCGCCTTCAGGAGAGGGGCTGCAGATCCCCGGGTTACGGGATCT
CCAGGGGTTCCGTGGTGTACTGCATGGGCCACCGCCAGGAGCACCGATGG
AGCAGCAGTGGAAGCCCCCCCCCGTACACCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3472694..3473426+

>mRNA_S-ischiensis_contig10.1651.1 ID=mRNA_S-ischiensis_contig10.1651.1|Name=mRNA_S-ischiensis_contig10.1651.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1464bp|location=Sequence derived from alignment at S-ischiensis_contig10:3472694..3473426+ (Schizocladia ischiensis KU_0333)
CCGATCGGGTCCCCGTCACGAGAGGCGCAGGAGGGGCGGGAGTTCCGAGG
CGCACCACATGGACCGCCTGCTGGAGAGACCCACGGGGGGTCGGGGTTTC
GGGGCGCGCCGCTTGGTCCACCAGTAGGAGAGGCATACAGGGTGGCGGGA
TTCCGGGGCGTACCGCTTGAGCTTCCTTCGGGAGAAGTGTACGTGGGCCC
GGGGTCCCGGGGCGCACCCCTTGGGCCGCCTCCAGGAGATGTACTGCCAG
GGCTGGGACTCCAGGGCGTACTGCTTGGACCGCCGCCAGGAGAGGCACAG
GGGGGGGCGGGGTTCTGGGTCCCACCGGCCTGTCCACCGCCACGAGAGGC
ACAGGGGTGGCACGGCTACCGGGGCATACCCCTTGGGCCCGCTGCAGGAG
AGGTGCAGTGGGCCCCGCCCGGGTTCTGGGGTGTACCTTACGGGCCGTCG
TCGGAGGAGGCGCAGGTGGACCCGGTGTTCCGGGACGCACCGCTTGGGCC
GCCTTCAAGAGAGGGGCCGCGGGGGCCGGGTTATCGGGTTGTGCCTTATG
GGCCACCGTCGGGGGAGGCACATGGGGACCCCATGTACCGGGCCGCACCG
CTTGGGCCGCCTTCAGGAGAGGGGCTGCAGATCCCCGGGTTACGGGATCT
CCAGGGGTTCCGTGGTGTACTGCATGGGCCACCGCCAGGAGCACCGATGG
AGCAGCAGTGGAAGCCCCCCCCCGTACACCCCCCGATCGGGTCCCCGTCA
CGAGAGGCGCAGGAGGGGCGGGAGTTCCGAGGCGCACCACATGGACCGCC
TGCTGGAGAGACCCACGGGGGGTCGGGGTTTCGGGGCGCGCCGCTTGGTC
CACCAGTAGGAGAGGCATACAGGGTGGCGGGATTCCGGGGCGTACCGCTT
GAGCTTCCTTCGGGAGAAGTGTACGTGGGCCCGGGGTCCCGGGGCGCACC
CCTTGGGCCGCCTCCAGGAGATGTACTGCCAGGGCTGGGACTCCAGGGCG
TACTGCTTGGACCGCCGCCAGGAGAGGCACAGGGGGGGGCGGGGTTCTGG
GTCCCACCGGCCTGTCCACCGCCACGAGAGGCACAGGGGTGGCACGGCTA
CCGGGGCATACCCCTTGGGCCCGCTGCAGGAGAGGTGCAGTGGGCCCCGC
CCGGGTTCTGGGGTGTACCTTACGGGCCGTCGTCGGAGGAGGCGCAGGTG
GACCCGGTGTTCCGGGACGCACCGCTTGGGCCGCCTTCAAGAGAGGGGCC
GCGGGGGCCGGGTTATCGGGTTGTGCCTTATGGGCCACCGTCGGGGGAGG
CACATGGGGACCCCATGTACCGGGCCGCACCGCTTGGGCCGCCTTCAGGA
GAGGGGCTGCAGATCCCCGGGTTACGGGATCTCCAGGGGTTCCGTGGTGT
ACTGCATGGGCCACCGCCAGGAGCACCGATGGAGCAGCAGTGGAAGCCCC
CCCCCGTACACCCC
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