mRNA_S-ischiensis_contig10.1649.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1649.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE) HSP 1 Score: 217 bits (553), Expect = 2.320e-59 Identity = 132/467 (28.27%), Postives = 240/467 (51.39%), Query Frame = 1
Query: 115 STSSSSFTEDWWIDLAVPNDTYVPAVYEAGNAVDISHNVLGNARDNEYDLDEASYTEGIAYVFSIFMVVGIIACVCIPVGRCCIWRDCCCCECLIPDQVEKVGSE-KWIKW-------LFVFFSLLGLAGTVGAVYGFVNVDEAMSRVTSTSYGLSDDMNQAVAIADDTLVTVEGVRADLDSVTDAAGDC--GAP-DSATDAFSDFDDYLAGVEEELVAVQNSGFISLAEQVTDIANETEDWDGVRRGVVWTLLAVCMVGSLGYIGLSFAAVRWGVTKGGASEWMRREERVERWAHCVVNPCSLIIVIAAWVMAALAITLAAFSGDFCVDPDAHIVDALDNDPDA------TYYAGDCTGPNTVLDPVLRGQLLAVENVPMIIPAVDQVVEFCSDASDSADSLEQGLFSIWQALAEAADLASCRNLNGAYAEAVYEGLCRDLTAGLTALWVSVVILACCHVFLGLLW 1464
+T+S++ + W+ ++V + Y PA + G +V+ +H++L R+N++D+++A Y+ G+ + +F+V G++ L + E++ K+ K L V S+ +A GA++G D ++ + + ++ DM + +A+DT V ++ V A +++ ++ C GA S DAF D + A V+ E+ V F LA+ V I++ D +G R+G++W +L + ++ + ++ +S + E + R A C +NPC++ + + W+ AALA++L+A +GDFC+DPDA+ + + ++ D TYY GDCT N +D ++ Q +AV + ++P + Q+ CSD ++ +L+ L S W L +A +L+SC NLNG Y AVY+ LC+ L GL WVS L + L + W
Sbjct: 2 TTTSTTGGDAWYDKISVYSSDYEPATFTPGPSVEANHDLLDGLRENDFDVEDAQYSAGLVTLIIVFLVAGLLXXXXXXXXX----------XXLGTSRQERLRERMKFGKQTHYGGNILMVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAF-DINSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTY----------ECVAFGYRDCAPASCCINPCTIFVAVVIWICAALAVSLSALTGDFCIDPDANANELITDNTDGEIADLITYYTGDCTSENAAVDAIITAQEVAVPIIQSVVPTLYQLEAACSDLAEPVQTLDNSLESFWTILEDAGELSSCENLNGLYQAAVYDELCKGLPQGLLGFWVSCAFLTVLLLILAIQW 447 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1649.1 >prot_S-ischiensis_contig10.1649.1 ID=prot_S-ischiensis_contig10.1649.1|Name=mRNA_S-ischiensis_contig10.1649.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=664bp ALSSWLPKGPHWRFCEATSRGVMSILGTGAAVVARVLQSTSSSSFTEDWWback to top mRNA from alignment at S-ischiensis_contig10:3448323..3458255- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1649.1 ID=mRNA_S-ischiensis_contig10.1649.1|Name=mRNA_S-ischiensis_contig10.1649.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=9933bp|location=Sequence derived from alignment at S-ischiensis_contig10:3448323..3458255- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:3448323..3458255- >mRNA_S-ischiensis_contig10.1649.1 ID=mRNA_S-ischiensis_contig10.1649.1|Name=mRNA_S-ischiensis_contig10.1649.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3984bp|location=Sequence derived from alignment at S-ischiensis_contig10:3448323..3458255- (Schizocladia ischiensis KU_0333)back to top |