mRNA_S-ischiensis_contig10.1632.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1632.1
Unique NamemRNA_S-ischiensis_contig10.1632.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A6H5KIJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ2_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.530e-43
Identity = 130/308 (42.21%), Postives = 168/308 (54.55%), Query Frame = 2 
Query:  113 MMLVAVPEALEAVLRQIARETTGDPHGADEGLQRQLGECLTAEYDLED---------------------GSTKRRG----VPPSLLAAAAPHIRRIQGKSR-------------LVSLLRGARLIFPV--GSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKADEATERALQASQANQTQVGVPRAAG--GGRHGGR--------------TRGEYELV 868
            M+L+AVP ALE+ LR + R    D  G D  L+ ++ E L    D E                      G  +  G    + P+ LA A PHIRR+  +               L+ LL+G  L+FP   G+ +   + GE+    +RA +ERR  LLL REQKEYQRM  N+    RE V  DIQAS KFQ  +GANMV+AV + FI+SYWASK++VG +NKSHRL +GL+GA+FI+LVE+LVFV RSLKADE  E A + ++ + T VGV R A   G   GGR                GEYELV
Sbjct:   30 MILIAVPPALESALRAVVR----DLDGVDSDLREKISERLPTIEDQEQAAAAXXXXXXXXPEEAESAPAGGARAGGARVTLNPATLARALPHIRRLMARGSGEGGDGHAASLGGLLELLQGGGLVFPDARGAASAAMKHGEE----KRAYQERRDRLLLLREQKEYQRMIDNIQRAPRETVR-DIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVG-DNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPMGGRGTLEQNRTSSSRRGREGEYELV 327
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: D8LUD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.290e-34
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 2 
Query:  341 LVSLLRGARLIFPV--GSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKADEATERA 769
            L+ LL+G  L+FP   G+ +   + GE+    +RA +ERR  LLL REQKEYQRM  N+    RE V  DIQAS KFQ  +GANMV+AV + FI+SYWASK++VG +NKSHRL +GL+GA+FI+LVE+LVFV RSLKADE  E A
Sbjct:   19 LLGLLQGGGLVFPDARGAASAAMKHGEE----KRAYQERRDRLLLLREQKEYQRMIDNIQRAPRETVR-DIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVG-DNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDA 157
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A836CG91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG91_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.060e-25
Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 2 
Query:  350 LLRGARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVG-GDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKADEATERALQASQANQTQVGVPRAA 820
            LLRG  LIFP  S A RE     DA+      +RR+HL L  E++EY+RMT+++    R+  G  DIQ ++KFQAA+GANMVLA L+ F L YW SKY V  +  +HR+A GL+GA  I +VEMLVFV+R+ +ADEA + A + S A   + G P AA
Sbjct:    9 LLRGGGLIFPE-SVAAREATKHRDAQ----FAQRRQHLELAHEEREYERMTASIRGPRRDRHGPSDIQVTLKFQAAVGANMVLAGLTMFGLCYWVSKYFV--SRDAHRMAAGLVGAFAITVVEMLVFVIRASRADEARDYAARRSSA--FRFGAPAAA 157
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: W2PG64_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PG64_PHYPN)

HSP 1 Score: 68.2 bits (165), Expect = 2.440e-9
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 2 
Query:  341 LVSLLRGARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLK 745
            LVSLLR  R I        +EE  ED  +R + +  RR+ LL   E+  Y  M  NV   +        Q SV+   +IGANMV+A ++AFI  Y+ ++ L  T N++ RL  GL GA+ ++++EM++F+ R+ K
Sbjct:   69 LVSLLRQGRGIQARVMATDQEETEEDREKRAKYLARRRQKLLRLDEEMRYDSMVRNVKTQSAAKELAHHQTSVRQHLSIGANMVMARVTAFIAVYFLARNL--TENETTRLVAGLGGAIVMMVIEMVLFIARAAK 201
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A329SQ89_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SQ89_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.470e-9
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 2 
Query:  341 LVSLLRGARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLK 745
            L+SLLR  R +        +EED ED  +R + + +RR+ LL   E+  Y  M  NV   + +      Q SV+   +IGANMV+A ++AFI  Y+ ++ +  T N++ R+  GL GA+ ++++EM++F+ R+ K
Sbjct:   69 LISLLRQGRGVQTRVIATYQEEDEEDKEKRIKYLAKRRQKLLRLDEEMRYGSMVRNVKTQSVDTELAHHQTSVRQHLSIGANMVMARVTAFIAVYFVARNI--TENETTRIVAGLGGAIVMMVIEMVLFIARAAK 201
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A225X0Y7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0Y7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.520e-8
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 2 
Query:  341 LVSLLRGARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKADEATER 766
            LVSLL+  R      + A +EED E   +R + + +RR  L    E+  Y  M  NV   +        Q SV+   +IGANMV+A ++AFI  Y+ ++ L        RL  GL GAV ++++EM++F+ R+ K +    R
Sbjct:   67 LVSLLQRGRGTQAQVAAATQEEDEEKKDQRAKYLAKRRLKLQRLDEEMRYGSMVRNVKTQSAAAELAQHQTSVRQHLSIGANMVMARITAFIAVYFVARNLTQNETTVRRLVAGLGGAVVMMVIEMVLFITRAAKFESIEHR 208
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A0P1A7H8_PLAHL (ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7H8_PLAHL)

HSP 1 Score: 64.7 bits (156), Expect = 3.770e-8
Identity = 44/137 (32.12%), Postives = 79/137 (57.66%), Query Frame = 2 
Query:  341 LVSLLRGARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKAD 751
            L+S LR  R +        + +D +D+ ++ + +  RRR L    E+  Y  M  NV   + +      Q +++   +IGANMV+A L+AFI  Y+ ++ L  T N++ RL  GL+GA+F++++EM++F+ R+ K +
Sbjct:   70 LMSFLRQGRGVQVRVEAKEQLKDEQDNEKKTKYLASRRRKLQRLDEEMRYSSMVRNVKTRSVDKELLHHQTNIRQHLSIGANMVMARLTAFIAVYFLARNL--TQNETTRLVAGLVGAIFMMIIEMILFITRAAKIE 204
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A5D6XW23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW23_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.170e-8
Identity = 42/128 (32.81%), Postives = 73/128 (57.03%), Query Frame = 2 
Query:  362 ARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLK 745
            A    P G D   EED  + A +   +++RRR L    E+  Y R+  NV    +       Q S +   +IGANMV+A ++AFI  Y  ++ L  T++++ R+ +GL+GA+ ++++EM++F+ R+ K
Sbjct:   76 AAATTPDG-DGETEEDATEAAAKDAYLEQRRRKLRRLDEEMRYGRLVHNVKSKTQAAELEQFQTSTRQHLSIGANMVMARVTAFIALYMVARVL--TDSETMRVVIGLVGAIVMMVIEMVLFITRAAK 200
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A421GRX0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GRX0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-7
Identity = 44/137 (32.12%), Postives = 78/137 (56.93%), Query Frame = 2 
Query:  341 LVSLLRGARLIFPVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKAD 751
            L +LL+    +  V  + G EED ++  +R + + +RR  L    ++  Y  M  N+   +        QASVK   +IGANMV+A ++AFI  Y+ ++ L  T N++ R+  GL GA+ ++++EM++F+ R+ K +
Sbjct:   17 LKTLLKPGIQVRAVTQE-GEEEDAQEIEKRAKYLAKRREKLQRIDQEMRYGNMVRNIKTQSLTAEMTHHQASVKQHLSIGANMVMARITAFIAVYFVARNL--TENETTRMIAGLGGAIVMMVIEMVLFITRAAKME 150
[Close]
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Match: A0A7S3NPZ3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPZ3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.780e-7
Identity = 43/151 (28.48%), Postives = 81/151 (53.64%), Query Frame = 2 
Query:  326 QGKSRLVSLLRGARLIF-------PVGSDAGREEDGEDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENA-REGVGGDIQASVKFQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLVEMLVFVVRSLKADE 754
            Q  S ++  +RG+ LIF       P+ S+                +++RR +L  + E++EY RM S+V +   R+G G     S+K Q  + AN+++A +++F +SY  S+ L+     SHR+  GL G + +L +E+++++ RS   ++
Sbjct:   33 QKVSSVLEFVRGSVLIFTKPGPSTPINSE----------------LEQRRAYLKRRAEEREYARMISSVKQRPHRDGFGN----SLKVQFTLSANVIVAPIASFFVSYLLSRSLI--QKTSHRIIAGLTGGIVMLFIELILYMARSFTIED 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KIJ2_9PHAE1.530e-4342.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUD3_ECTSI1.290e-3457.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CG91_9STRA2.060e-2549.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W2PG64_PHYPN2.440e-937.04Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A329SQ89_9STRA4.470e-934.81Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A225X0Y7_9STRA1.520e-833.80Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A0P1A7H8_PLAHL3.770e-832.12ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax... [more]
A0A5D6XW23_9STRA9.170e-832.81Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A421GRX0_9STRA1.180e-732.12Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A7S3NPZ3_9STRA6.780e-728.48Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3282686..3286658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog4792.ETI34713
EggNOG free text desc.Endoplasmic reticulum-based factor for assembly of V-ATPase
EggNOG OGs2CAH1@1,2S38I@2759,3QAP1@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, vacuolar ER assembly factor, Vma12
Ec32 orthologEc-14_004540.1
Exons4
Model size1732
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1632.1prot_S-ischiensis_contig10.1632.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3283520..3286546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.4273682-UTR-S-ischiensis_contig10:3282685..32835191622815541.4273682-UTR-S-ischiensis_contig10:3282685..3283519Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3282686..3283519 -
1695739757.8501465-UTR-S-ischiensis_contig10:3282685..32835191695739757.8501465-UTR-S-ischiensis_contig10:3282685..3283519Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3282686..3283519 -
1622815541.502438-UTR-S-ischiensis_contig10:3286546..32866581622815541.502438-UTR-S-ischiensis_contig10:3286546..3286658Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3286547..3286658 -
1695739757.9223194-UTR-S-ischiensis_contig10:3286546..32866581695739757.9223194-UTR-S-ischiensis_contig10:3286546..3286658Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3286547..3286658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.4399717-CDS-S-ischiensis_contig10:3283519..32837501622815541.4399717-CDS-S-ischiensis_contig10:3283519..3283750Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3283520..3283750 -
1695739757.865737-CDS-S-ischiensis_contig10:3283519..32837501695739757.865737-CDS-S-ischiensis_contig10:3283519..3283750Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3283520..3283750 -
1622815541.4542093-CDS-S-ischiensis_contig10:3284604..32847551622815541.4542093-CDS-S-ischiensis_contig10:3284604..3284755Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3284605..3284755 -
1695739757.8818974-CDS-S-ischiensis_contig10:3284604..32847551695739757.8818974-CDS-S-ischiensis_contig10:3284604..3284755Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3284605..3284755 -
1622815541.46961-CDS-S-ischiensis_contig10:3285800..32858891622815541.46961-CDS-S-ischiensis_contig10:3285800..3285889Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3285801..3285889 -
1695739757.8967936-CDS-S-ischiensis_contig10:3285800..32858891695739757.8967936-CDS-S-ischiensis_contig10:3285800..3285889Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3285801..3285889 -
1622815541.4847527-CDS-S-ischiensis_contig10:3286231..32865461622815541.4847527-CDS-S-ischiensis_contig10:3286231..3286546Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3286232..3286546 -
1695739757.9073744-CDS-S-ischiensis_contig10:3286231..32865461695739757.9073744-CDS-S-ischiensis_contig10:3286231..3286546Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3286232..3286546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1632.1

>prot_S-ischiensis_contig10.1632.1 ID=prot_S-ischiensis_contig10.1632.1|Name=mRNA_S-ischiensis_contig10.1632.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=262bp
MMLVAVPEALEAVLRQIARETTGDPHGADEGLQRQLGECLTAEYDLEDGS
TKRRGVPPSLLAAAAPHIRRIQGKSRLVSLLRGARLIFPVGSDAGREEDG
EDDAERQRAIKERRRHLLLKREQKEYQRMTSNVTENAREGVGGDIQASVK
FQAAIGANMVLAVLSAFILSYWASKYLVGTNNKSHRLAVGLLGAVFILLV
EMLVFVVRSLKADEATERALQASQANQTQVGVPRAAGGGRHGGRTRGEYE
LVQQAETKEDG*
back to top

mRNA from alignment at S-ischiensis_contig10:3282686..3286658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1632.1 ID=mRNA_S-ischiensis_contig10.1632.1|Name=mRNA_S-ischiensis_contig10.1632.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3973bp|location=Sequence derived from alignment at S-ischiensis_contig10:3282686..3286658- (Schizocladia ischiensis KU_0333)
GGAGCGCCACTTTGTGGAGAGCCCTCCGGTGCACCCTGCAGGCGAGCTAC
TTCCGCTGCCGAGGGCAGGCTCGGAGCGGGGATTTGGTGGCGACGCAGCG
CGCGCGGATGCGATGATGTTGGTGGCGGTCCCAGAGGCGTTGGAGGCGGT
GTTGCGGCAAATCGCAAGAGAAACAACGGGCGACCCGCACGGGGCCGACG
AGGGGTTACAACGGCAGCTGGGCGAGTGCCTGACTGCCGAGTATGACTTG
GAGGACGGCTCCACCAAGCGTCGCGGTGTTCCGCCGTCCCTCCTGGCGGC
AGCCGCCCCCCACATTCGACGAATACAGGGGAAGTCACGCCTGGTGTCCC
TGCTGCGGGGCGCCAGACTGATATTCCCGGTGGGCTCGGATGCAGGAAGA
GAGGAAGATGGGGAGGATGATGCAGAGGTGTGTGATGCATGACTGTCATC
GCTCACGAAGCGCTGGAAGGCGGCCGTGCCCTGCAACATGCTGAAACATG
CCCCCACAAAGACCCCCAAAAATACCTCAAGAGGACCAGGACTCGTGACC
CACGCGTTGGATCCATTGCAAATGGGCGCCCTCGGAATTTCCAGGCCTTG
CATCTTGCGCAGTGGGTGCTTCCCCCTTGCTCGGTACAGTATTTCATGCC
AGAGGCGGCCACGCTCAACAGCAAGCAGTTTCCTGCAACCACTGTGGCGT
TCGAAGTGTTGCGTGCCTACCCAGCTAAGCACTCTATTCCCGGACGCACA
CCCCCTCCCCCCCCTGCAGCGCCAGCGTGCCATCAAGGAGAGACGAAGGC
ACTTGCTCCTCAAGCGCGAGCAGAAGGAGTACCAAAGAATGACGTCCAAC
GTGACAGAGTGAGCCGACGATGCGGGCGGGCCCCCCTTTTTCTCTTTCAT
GGTGCCAATGGGGGTTTACGACCAGAGTCAAAGCGCACACCATGCACCAG
CAGACGCACGAGTGAATTACGCACGCACCGTACGGTCTCTGCCGGCGGTC
TGTGGTTGCATAGTTCGTTCACGTGTACAGTAGCATTGTGTCATAGAAGC
ACTATATAGTACTAGTACTGTATAGTGCGGTGCACGGCACATCAAAATAC
AAGGTACAAGGTTGCGTCTGCTTCTCGCGCTCATGTGTCGGACCTTTCGC
GGTGCACTTTGGCAGCCCTGGAGGGGTTGGTTCAGTTCTTCGAAGCACCA
CTCGGTGAGTAGGTTCAGTGTTGGCCCTTGGACGAATTCAGACGCCCACC
GCACTCTCGGCACTGCATGGACAGGCCTGCACCCAAGCCCCAACTCCCCC
GATCGGCGCCTAGCGGGGTGGGGCAGAACCATCGGAGGGTGGACGGATGC
ACTGTGCTCAGCCTGTACTGCAGTAGCTACAAGCACGATACTCCAAGTAA
AGCTCCAAGTACTAGATCTATGAACCGGAGCCGGTTATTGCCGTTTGGTT
CCGGTTAACCGGCCGACCGGCTAAACGGGCGGAAGAAGCCTTGCACCGTT
TCTACTATTCTTTCTCCTTCGAAATCGTGCATGTTTTGACATTTGATGTA
GCCGGTACGTGGCGAGATACTACCGTTTGTCGCCGGTTTTGCCCGAAACA
TAGACGCGCGAAAACTTGCTGTTTCAATAACCGGCCGAACTTAACCGGCT
GCGATGCCAGTTGCCATGTTAACCGACGGGCTTTGCCGGTTCAAAGCTCT
ACGACGCACCTGCTTTTAGTGGGTACGCACGCGCCCACGGGTCTCCGCCA
GTGCCTAAGCAGGCGGGACAGGCCACTCCGGTGTCTCGATTGGCTTTCTT
CGACTCACAATGTACGCGGCCGTGCAGTTTGCATCATCGCACGAGTCGAC
GCGTATGCTCGCTCTCACCCCTCACCCTGCCACTCGTCCGCGCGGACGGC
CAGGAACGCAAGAGAAGGGGTCGGCGGCGATATCCAGGCCTCTGTGAAAT
TCCAAGCCGCCATCGGCGCCAATATGGTCCTGGCGGTGCTTTCGGCCTTC
ATCCTCAGCTACTGGGCCAGCAAGTACTTGGTGGGGACCAACAACAAGTC
ACACGTGAGTCTGAGGGAGAGGCCACCTCTCCCCCACTGCTGGCCGATGG
TGGCAGCGGCCGGTTCGTTGCTTGGTGCCAATGCTGCAGTTCCTTGGACC
AATTACGAGTAGTGGACTGATTTTGGCGCTGTCGATTTCCGGTATTCCAA
GTAGTGTGGGATGAATGCATAGAGTTGGCGGCGCTCGTTGTGACTCGCAG
TACCGGGTAATAGTAAGGCAGCCATTTAGGGGACAGAATTGGGCATCTCA
CTTGACCAGTTGGCAGTTAAGGTTTGAGAAAAAATGGCTAACCTTAGTTG
AGGGTTAATGCTTCACTGAGGCCGGTTGAGCCTTAATTGGTCTTAAGCGG
CCAACTAGCCACAAAAAGCCGGGTTAATGCTTCATTTGAGGGCGGTTAAG
CCCTTAGTTGGCCTTCAGTGGCCAAATAGGCCACAAACAGCCAATTCACG
GCCAAAAAGGCCACTTCCCATGTAGGTATACCAACCAACCAGGGAGCAAT
AGGTACAGCGTCGTTGGCAGGTCTTCAAGCTTGCTATCATTTTTTTTTTG
CCAAGTTTATATTACTTAGGGTGCTTATGCTGTTAGGCCATGCGTAAACA
TCGACTCGGGTCCAAACTATGCAGAAACGCCACGATCGATCACCGTGTGC
ACCGCTGCACCCTTTCAGCGGCATCTCGTCCTGCGCAGACCCAAGAGGGA
GGGGGCATCTGCTCCCGACGAGACCGCACGACATTTTTTTCTTGACTCGC
CCTTCTCCCCGCTCCGTGGCGGGTGGTGCATCCGTGCGTGCGTGCGTGCC
CGCGTGCTGACGCTCGCACTGGCGCCGGGCGCCCGCAACCCTCCCGTCGC
GCGTGCAGAGGCTGGCTGTCGGCCTGCTGGGGGCGGTGTTCATACTGCTG
GTGGAGATGCTGGTGTTTGTGGTGAGGTCGCTCAAGGCGGACGAGGCGAC
GGAGAGGGCCCTGCAGGCCTCCCAGGCCAACCAGACGCAGGTCGGGGTCC
CGCGGGCGGCGGGTGGCGGCCGCCACGGGGGGCGGACACGCGGGGAGTAC
GAGCTGGTGCAGCAGGCGGAGACAAAAGAAGACGGCTGAGCGGCTCGAGT
GGCGAAGCACAGCGTCAGGCTCTCCCCGCGCCTCGTTGTACCCGAGTACT
TCAAAGTACAAGTACGAGTACTTACAAGTATATTTTTACCATTTTGGTGT
TTGTGCGATTGGGGGTGGATGGAAGTAGGTGTTTGTTTTGTGGTGATGTC
TGTGGAGATTGCCGTGCAGCCGGCTCGATCGGATGCCGTGGCAGAGACTT
GGGGGCTGTTGTCGTAGTCGGCGGCGCGCTGAGGCGATTGATGTGTCCCG
GCCCCTTGCGTCAGTTTGGTGCAAGGACTGGGAGGACTGGCTGTGCCCCA
TGGTGATGTTTTGCCGTTGGGCTGTTGCATGGTCCCTGACTCGCAAGTGT
GGAGGTAGGAGGGCTGGTTCGTTTCCTGGGCCCCCGCGGAGGGCGTAGTC
CTCCTACTAAGTTACGAGTACTTCGAAGTACAGTGGTACAGTGTTCGTTT
CCTCGGCCTCCGCGGAGGGCGCATCGTAGTCAACCTACTACGAGTACAGT
GGTACAGAGTAGGCTTCGCGTTAAGTGTTGTCATGATGTGGTTGGTGACG
TGGCTTCTGAGGTCCATCGAGTCACGTCAGCAGCAGTCGCCCATATTGAC
ATTTCTGCCCTGTGCGCCTTGTTAATACTTCTCCACACTACAATTGTACA
CACATGCTGCGGGCACAGAGTGGCACTCCCAGCCTCGTCTGGGAGCTGAT
CAGGCAGCGGGTTGGTGTACTCCTGTCTTTGAGGAGTTGAGGTATGCATA
TTTGCGACCGTGGTGGCCGGCCATCGCACCCGACCGTGACTGCTCTAAGC
TTTAATAGCATAAGTACACGAGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:3282686..3286658-

>mRNA_S-ischiensis_contig10.1632.1 ID=mRNA_S-ischiensis_contig10.1632.1|Name=mRNA_S-ischiensis_contig10.1632.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1572bp|location=Sequence derived from alignment at S-ischiensis_contig10:3282686..3286658- (Schizocladia ischiensis KU_0333)
ATGATGTTGGTGGCGGTCCCAGAGGCGTTGGAGGCGGTGTTGCGGCAAAT
CGCAAGAGAAACAACGGGCGACCCGCACGGGGCCGACGAGGGGTTACAAC
GGCAGCTGGGCGAGTGCCTGACTGCCGAGTATGACTTGGAGGACGGCTCC
ACCAAGCGTCGCGGTGTTCCGCCGTCCCTCCTGGCGGCAGCCGCCCCCCA
CATTCGACGAATACAGGGGAAGTCACGCCTGGTGTCCCTGCTGCGGGGCG
CCAGACTGATATTCCCGGTGGGCTCGGATGCAGGAAGAGAGGAAGATGGG
GAGGATGATGCAGAGATGATGTTGGTGGCGGTCCCAGAGGCGTTGGAGGC
GGTGTTGCGGCAAATCGCAAGAGAAACAACGGGCGACCCGCACGGGGCCG
ACGAGGGGTTACAACGGCAGCTGGGCGAGTGCCTGACTGCCGAGTATGAC
TTGGAGGACGGCTCCACCAAGCGTCGCGGTGTTCCGCCGTCCCTCCTGGC
GGCAGCCGCCCCCCACATTCGACGAATACAGGGGAAGTCACGCCTGGTGT
CCCTGCTGCGGGGCGCCAGACTGATATTCCCGGTGGGCTCGGATGCAGGA
AGAGAGGAAGATGGGGAGGATGATGCAGAGCGCCAGCGTGCCATCAAGGA
GAGACGAAGGCACTTGCTCCTCAAGCGCGAGCAGAAGGAGTACCAAAGAA
TGACGTCCAACGTGACAGACGCCAGCGTGCCATCAAGGAGAGACGAAGGC
ACTTGCTCCTCAAGCGCGAGCAGAAGGAGTACCAAAGAATGACGTCCAAC
GTGACAGAGAACGCAAGAGAAGGGGTCGGCGGCGATATCCAGGCCTCTGT
GAAATTCCAAGCCGCCATCGGCGCCAATATGGTCCTGGCGGTGCTTTCGG
CCTTCATCCTCAGCTACTGGGCCAGCAAGTACTTGGTGGGGACCAACAAC
AAGTCACACGAACGCAAGAGAAGGGGTCGGCGGCGATATCCAGGCCTCTG
TGAAATTCCAAGCCGCCATCGGCGCCAATATGGTCCTGGCGGTGCTTTCG
GCCTTCATCCTCAGCTACTGGGCCAGCAAGTACTTGGTGGGGACCAACAA
CAAGTCACACAGGCTGGCTGTCGGCCTGCTGGGGGCGGTGTTCATACTGC
TGGTGGAGATGCTGGTGTTTGTGGTGAGGTCGCTCAAGGCGGACGAGGCG
ACGGAGAGGGCCCTGCAGGCCTCCCAGGCCAACCAGACGCAGGTCGGGGT
CCCGCGGGCGGCGGGTGGCGGCCGCCACGGGGGGCGGACACGCGGGGAGT
ACGAGCTGGTGCAGCAGGCGGAGACAAAAGAAGACGGCTGAAGGCTGGCT
GTCGGCCTGCTGGGGGCGGTGTTCATACTGCTGGTGGAGATGCTGGTGTT
TGTGGTGAGGTCGCTCAAGGCGGACGAGGCGACGGAGAGGGCCCTGCAGG
CCTCCCAGGCCAACCAGACGCAGGTCGGGGTCCCGCGGGCGGCGGGTGGC
GGCCGCCACGGGGGGCGGACACGCGGGGAGTACGAGCTGGTGCAGCAGGC
GGAGACAAAAGAAGACGGCTGA
back to top