mRNA_S-ischiensis_contig10.1626.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1626.1
Unique NamemRNA_S-ischiensis_contig10.1626.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3236403..3236766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.8377998-CDS-S-ischiensis_contig10:3236402..32367531622815505.8377998-CDS-S-ischiensis_contig10:3236402..3236753Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3236403..3236753 +
1695739738.4251056-CDS-S-ischiensis_contig10:3236402..32367531695739738.4251056-CDS-S-ischiensis_contig10:3236402..3236753Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3236403..3236753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.8535416-UTR-S-ischiensis_contig10:3236753..32367661622815505.8535416-UTR-S-ischiensis_contig10:3236753..3236766Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3236754..3236766 +
1695739738.4352973-UTR-S-ischiensis_contig10:3236753..32367661695739738.4352973-UTR-S-ischiensis_contig10:3236753..3236766Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3236754..3236766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1626.1prot_S-ischiensis_contig10.1626.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3236403..3236753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1626.1

>prot_S-ischiensis_contig10.1626.1 ID=prot_S-ischiensis_contig10.1626.1|Name=mRNA_S-ischiensis_contig10.1626.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
ARVVRQTQTRLPWWTPVLLPTRQLVGKWLPPPPPAAAHALLLQLCLETSI
AAPQLPRAAGRPAPGRTNRPDAWPSRPSSSSSLSSMSSSRHHHYDHHNHH
HKSYSYPSSSSRSPPR*
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mRNA from alignment at S-ischiensis_contig10:3236403..3236766+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1626.1 ID=mRNA_S-ischiensis_contig10.1626.1|Name=mRNA_S-ischiensis_contig10.1626.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=364bp|location=Sequence derived from alignment at S-ischiensis_contig10:3236403..3236766+ (Schizocladia ischiensis KU_0333)
GCACGTGTAGTTCGCCAAACACAAACTAGACTGCCCTGGTGGACACCCGT
GCTCCTACCTACTCGCCAGCTCGTGGGCAAATGGCTACCGCCGCCGCCCC
CAGCAGCAGCACACGCGCTGCTGCTACAGCTGTGCCTCGAGACATCCATT
GCAGCGCCACAGCTTCCAAGGGCGGCCGGGCGCCCGGCCCCTGGGCGGAC
GAACCGCCCAGATGCATGGCCTTCACGGCCGTCATCATCATCGTCCTTGT
CATCCATGTCGTCGTCACGCCACCACCACTACGACCACCATAACCACCAC
CACAAATCGTACTCGTACCCGTCGTCATCATCGCGATCACCACCACGGTA
GCAGCCATCATCAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3236403..3236766+

>mRNA_S-ischiensis_contig10.1626.1 ID=mRNA_S-ischiensis_contig10.1626.1|Name=mRNA_S-ischiensis_contig10.1626.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig10:3236403..3236766+ (Schizocladia ischiensis KU_0333)
GCACGTGTAGTTCGCCAAACACAAACTAGACTGCCCTGGTGGACACCCGT
GCTCCTACCTACTCGCCAGCTCGTGGGCAAATGGCTACCGCCGCCGCCCC
CAGCAGCAGCACACGCGCTGCTGCTACAGCTGTGCCTCGAGACATCCATT
GCAGCGCCACAGCTTCCAAGGGCGGCCGGGCGCCCGGCCCCTGGGCGGAC
GAACCGCCCAGATGCATGGCCTTCACGGCCGTCATCATCATCGTCCTTGT
CATCCATGTCGTCGTCACGCCACCACCACTACGACCACCATAACCACCAC
CACAAATCGTACTCGTACCCGTCGTCATCATCGCGATCACCACCACGGTA
GGCACGTGTAGTTCGCCAAACACAAACTAGACTGCCCTGGTGGACACCCG
TGCTCCTACCTACTCGCCAGCTCGTGGGCAAATGGCTACCGCCGCCGCCC
CCAGCAGCAGCACACGCGCTGCTGCTACAGCTGTGCCTCGAGACATCCAT
TGCAGCGCCACAGCTTCCAAGGGCGGCCGGGCGCCCGGCCCCTGGGCGGA
CGAACCGCCCAGATGCATGGCCTTCACGGCCGTCATCATCATCGTCCTTG
TCATCCATGTCGTCGTCACGCCACCACCACTACGACCACCATAACCACCA
CCACAAATCGTACTCGTACCCGTCGTCATCATCGCGATCACCACCACGGT
AG
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