mRNA_S-ischiensis_contig10.1613.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1613.1
Unique NamemRNA_S-ischiensis_contig10.1613.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: UPI00193BE347 (alpha/beta fold hydrolase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193BE347)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEV-----LSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPE 567
            G SLPV+RTL  L+RTGD++R+IE CLSGTL ++ DQ++ +GLPLS  V         RL   RG  E      L G DV R+  +L RELGL +V  ED+EV P VP+
Sbjct:  579 GASLPVIRTLADLVRTGDKVRLIEGCLSGTLGFLCDQLT-QGLPLSRAV---------RLARERGYTEPHPRDDLLGLDVARKALILARELGL-VVSQEDVEVEPFVPK 676          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A2T4VPS8_VITXG (Homoserine O-acetyltransferase n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4VPS8_VITXG)

HSP 1 Score: 79.7 bits (195), Expect = 2.590e-12
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEV-----LSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPE 567
            G SLPV+RTL  L+RTGD +R+IE CLSGTL ++ DQ++ +G+PLS  V         RL   RG  E      L G DV R+  +L RELGL  V  ED+EV P VP+
Sbjct:  579 GASLPVIRTLADLVRTGDRVRLIEGCLSGTLGFLSDQLT-QGVPLSRAV---------RLARERGYTEPHPRDDLLGVDVARKALILARELGLE-VSQEDVEVEPFVPK 676          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A7Z9GC44_9DELT (Aspartate kinase (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Z9GC44_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 6.840e-11
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            G SLPV+ T+++L+RTGD + ++E CLSGTL Y+ ++V + G+ LS  V++A     T         + LSG DV R+  +L RELGL L  LE +EV+P+VP +
Sbjct:  475 GASLPVIDTVKNLVRTGDRVTLVEGCLSGTLGYLTNEV-MAGVSLSAAVSKAKELGYTEPQPQ----DDLSGLDVARKALILARELGLELA-LEQVEVTPLVPAE 573          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A250IAD3_9DELT (Homoserine O-acetyltransferase n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250IAD3_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 7.960e-11
Identity = 52/110 (47.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEV-----LSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            G SLPVLRTL  L+RTGD +R IE CLSGTL ++ +Q++  G+PLS  V         RL   RG  E      L G DV R+  +L RELGL  V  ED+EV   VP +
Sbjct:  576 GASLPVLRTLADLVRTGDRVRRIEGCLSGTLGFLCEQLT-EGVPLSRAV---------RLARERGYTEPHPREDLLGLDVARKALILARELGLE-VSQEDVEVESFVPRE 674          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A2T4VFL2_VITXG (Bifunctional aspartate kinase/homoserine dehydrogenase I n=2 Tax=Archangiaceae TaxID=39 RepID=A0A2T4VFL2_VITXG)

HSP 1 Score: 74.3 bits (181), Expect = 1.450e-10
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            G SLPV+ TL++L+RTGD +  IE C SG+L YI   + + G+PLS+ V  A  +  T  +      + LSG DV R+  +L RELGL L  LED+ V P+VP +
Sbjct:  624 GASLPVIETLKNLVRTGDRVERIEGCFSGSLGYICHAL-MDGVPLSQAVRTARANGYTEPHPR----DDLSGLDVARKALILARELGLEL-DLEDIAVEPLVPRE 722          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A7HD35_ANADF (Homoserine O-acetyltransferase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) TaxID=404589 RepID=A7HD35_ANADF)

HSP 1 Score: 73.6 bits (179), Expect = 2.430e-10
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  214 RGHGAMLVCDNAIGGGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEV-----LSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            R HG     D A+G  SLPV+ TLR L+R+GD +R I   LSGTL Y+  +++ RG+PLS           TR   G G  E      LSGRD  R+  +L RE G  L  LED+EV P+VP +
Sbjct:  518 RHHGRQYRYDTAVGA-SLPVIGTLRRLVRSGDRVRSIVGSLSGTLGYLCTELA-RGVPLSLA---------TRWAIGLGYAEEDPRDDLSGRDAARKALILARETGAQLA-LEDVEVEPLVPPE 629          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A2E5HR05_9DELT (Bifunctional aspartate kinase/homoserine dehydrogenase I (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E5HR05_9DELT)

HSP 1 Score: 72.8 bits (177), Expect = 4.440e-10
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            G SLPV+ TL++L+RTGD +R IE   SGTL Y+ ++V + G  LSE V    T+H       R   + LSG DV R+  +L RELGL L  L D+EV P+VP +
Sbjct:  589 GASLPVIETLKNLVRTGDRVRRIEGSFSGTLGYLTNEV-MGGRSLSEAVR---TAHRLGYTEPRPQ-DDLSGLDVARKALILARELGLELN-LSDVEVEPLVPPE 687          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A1D8AZR3_9BACT (Bifunctional aspartokinase/homoserine dehydrogenase 1 n=1 Tax=Lacunisphaera limnophila TaxID=1838286 RepID=A0A1D8AZR3_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 1.060e-9
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPE 567
            G +LPV+ TL++L+RTGD +  IE   SGTL Y+ DQ++ +G PLS  V  A     T  +      + LSG DV R+  +L RELGL L  L D+E+ P VPE
Sbjct:  615 GAALPVIETLKNLVRTGDHVITIEGAFSGTLGYLCDQLA-QGQPLSVAVRTARDLGYTEPHPR----DDLSGLDVARKAVILARELGLRL-DLTDVELKPFVPE 712          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A0K1Q0X4_9DELT (Aspartokinase n=2 Tax=Myxococcales TaxID=29 RepID=A0A0K1Q0X4_9DELT)

HSP 1 Score: 71.6 bits (174), Expect = 1.060e-9
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            G SLPV+ TL++L+RTGD + ++E  LSGTL Y+ ++VS RG+PLS+ V  A     T  +      + L G D  R+  +L RELG+ L  L D++V P VP +
Sbjct:  616 GASLPVIETLKNLVRTGDRVLLVEGSLSGTLGYLSNEVS-RGVPLSQAVRAARELGYTEPHPR----DDLGGVDAARKALILARELGVKL-DLSDVKVEPFVPSE 714          
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Match: A0A661GA80_9GAMM (Bifunctional aspartokinase/homoserine dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GA80_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-9
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  256 GGSLPVLRTLRSLLRTGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRGLWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPED 570
            G +LP++RTLR L+ TGD +R I+  LSGTL Y+ + V     P S++VAEA  S  T  +      + LSG DV R+L +L RELGL L  + D  V  +V ED
Sbjct:  609 GAALPIIRTLRDLVDTGDRIRSIQGILSGTLAYLFN-VYDGSRPFSKIVAEARESGYTEPDPR----DDLSGMDVARKLTILARELGLSLE-IGDFPVQNLVAED 707          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00193BE3472.600e-1349.54alpha/beta fold hydrolase n=1 Tax=Archangium viola... [more]
A0A2T4VPS8_VITXG2.590e-1248.62Homoserine O-acetyltransferase n=1 Tax=Vitiosangiu... [more]
A0A7Z9GC44_9DELT6.840e-1143.81Aspartate kinase (Fragment) n=1 Tax=Myxococcales b... [more]
A0A250IAD3_9DELT7.960e-1147.27Homoserine O-acetyltransferase n=1 Tax=Melittangiu... [more]
A0A2T4VFL2_VITXG1.450e-1044.76Bifunctional aspartate kinase/homoserine dehydroge... [more]
A7HD35_ANADF2.430e-1043.55Homoserine O-acetyltransferase n=1 Tax=Anaeromyxob... [more]
A0A2E5HR05_9DELT4.440e-1046.67Bifunctional aspartate kinase/homoserine dehydroge... [more]
A0A1D8AZR3_9BACT1.060e-945.19Bifunctional aspartokinase/homoserine dehydrogenas... [more]
A0A0K1Q0X4_9DELT1.060e-942.86Aspartokinase n=2 Tax=Myxococcales TaxID=29 RepID=... [more]
A0A661GA80_9GAMM1.400e-944.76Bifunctional aspartokinase/homoserine dehydrogenas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3124757..3131001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog404589.Anae109_2430
Preferred namemetX
KEGG rclassRC00002,RC00004,RC00041,RC00043,RC00087
KEGG koko:K00003,ko:K00641,ko:K12524
KEGG ReactionR00480,R01773,R01775,R01776
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00017,M00018,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EggNOG OGs1MVJV@1224,2WJRJ@28221,42N1M@68525,COG0460@1,COG0460@2,COG2021@1,COG2021@2
EC1.1.1.3,2.3.1.31,2.7.2.4
COG Functional cat.E
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size1226
Cds size1224
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1613.1prot_S-ischiensis_contig10.1613.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3124757..3131000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.1473482-CDS-S-ischiensis_contig10:3124756..31249491622815500.1473482-CDS-S-ischiensis_contig10:3124756..3124949Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3124757..3124949 +
1695739736.5361104-CDS-S-ischiensis_contig10:3124756..31249491695739736.5361104-CDS-S-ischiensis_contig10:3124756..3124949Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3124757..3124949 +
1622815500.157719-CDS-S-ischiensis_contig10:3126374..31264301622815500.157719-CDS-S-ischiensis_contig10:3126374..3126430Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3126375..3126430 +
1695739736.5512638-CDS-S-ischiensis_contig10:3126374..31264301695739736.5512638-CDS-S-ischiensis_contig10:3126374..3126430Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3126375..3126430 +
1622815500.1717596-CDS-S-ischiensis_contig10:3128254..31283711622815500.1717596-CDS-S-ischiensis_contig10:3128254..3128371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3128255..3128371 +
1695739736.5600488-CDS-S-ischiensis_contig10:3128254..31283711695739736.5600488-CDS-S-ischiensis_contig10:3128254..3128371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3128255..3128371 +
1622815500.3136647-CDS-S-ischiensis_contig10:3128890..31290191622815500.3136647-CDS-S-ischiensis_contig10:3128890..3129019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3128891..3129019 +
1695739736.5683372-CDS-S-ischiensis_contig10:3128890..31290191695739736.5683372-CDS-S-ischiensis_contig10:3128890..3129019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3128891..3129019 +
1622815500.325422-CDS-S-ischiensis_contig10:3130271..31310001622815500.325422-CDS-S-ischiensis_contig10:3130271..3131000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3130272..3131000 +
1695739736.5804405-CDS-S-ischiensis_contig10:3130271..31310001695739736.5804405-CDS-S-ischiensis_contig10:3130271..3131000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3130272..3131000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1613.1

>prot_S-ischiensis_contig10.1613.1 ID=prot_S-ischiensis_contig10.1613.1|Name=mRNA_S-ischiensis_contig10.1613.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=408bp
SPSPPVSSLSSCCSSPSSPSSVHHGKVCSPPPAACWTSMSLGSKAEAHVP
AMAAAAAVPHGPGPGSGSRGSRGHGAMLVCDNAIGGGSLPVLRTLRSLLR
TGDELRVIEACLSGTLTYILDQVSVRGLPLSEVVAEACTSHETRLNTGRG
LWEVLSGRDVCRRLQLLLRELGLGLVPLEDMEVSPVVPEDTAPITPTAAT
TADAESDAAAVAAAAPSAGELDPAMAAAAAAAAAAPKAAAAEDSPSALSC
GRGALGGATASAAPAAAASVALRAHDAAFAARVAAAASEGRRLRYIARVE
LHRDGDGGSGGGGNGGQGGDGHGGDGRGDDRGDAWPRPRPVTAAAVGAVA
APAAAAASGAVSVRARAGLVAVGDDHPAFGLRRTQILVAVSSERQPGGLV
LQGAGAGA
back to top

mRNA from alignment at S-ischiensis_contig10:3124757..3131001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1613.1 ID=mRNA_S-ischiensis_contig10.1613.1|Name=mRNA_S-ischiensis_contig10.1613.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6245bp|location=Sequence derived from alignment at S-ischiensis_contig10:3124757..3131001+ (Schizocladia ischiensis KU_0333)
TCTCCGTCCCCGCCTGTTTCCTCGTTGTCCTCGTGCTGCTCATCCCCGTC GTCGCCCTCCTCAGTGCATCATGGCAAGGTGTGCTCGCCGCCCCCAGCTG CCTGTTGGACGTCCATGTCGCTGGGGTCAAAGGCGGAGGCGCATGTGCCG GCGATGGCGGCAGCGGCGGCAGTGCCCCACGGGCCGGGGCCAGGTGTGTG TTGAGCCCCCCGTAATGTTGTGTATAGTTATTCGCACTGGCGTGTACGAG TACTCCTACAGTCATGCCGTTACTGTGAGGTGCACGCTGTCTGTATCCTG CGTTCTTTCGAGGTGAAGAGGTTTACATAGGGGTGCTTCTACTGCAGTGC CCACGGTGCTACAGTAAATAATTTTTCTGCACTGTGCAGTAGTATACTGT ACTGTACTGCACTGCACTGTACTGTGCTGTACCGTTGTTCTGGCGACGCC TGTGCCTTGCCGCGGAAGACATACTTGTTCTGTGGAGTCAGAGCGTTCTT GATGGATGCGATGACGGCGTGCTGTGTGTGCCCATGTCGGACAGGGAGCC ACTAAGTACCCTGTCCTGTGCATGCCACCGGCTGTCGGCCCGCAGTGTTC TACTTGGAGTACTCACTGGACTGCGATGTGATGTGATGTGATATGATGTC AAACTTCAGTACATGCGAGTACACATCAGATCACATCACATCACAGCAGT GTCCTGTAGCTTGCTGGACCGCCGACCGGCCCCGTCCGGGTAGCCGCGTT GATCGCACACCAGTACTCTGCCACTGTACTGTGCAGACTTGCTGCACTCT GCGCTGTACTGTGCTCGAGCGCAATAGTTGAGATGGCTAGGCTCGCCAGC GCGGGAGGGAGATTGCTCCGCCGTCAACGGCGCCTGGTCAATGATCTCGG GACTACGGCAAGCACAGTGTACATATGTATGTACTACGTAGTACTAGTAC GGCACTGCAGGTAGTACTGTACTGTAACCACCGAGAGTTCTCCTCCTGGT CGATGGTCTCGGGACTACGGCAAGCACACTGTGAATACGTGTATATCCTA CTACAGTAGCACGGTATGTACTCCGAGTACTAGTACTGTACTGTCGCGAC CGAGATTTCTCCCCCTGGGGACAGGGGGACACACTTGGCCGCGGGGTGAG AGAGCGGGCTGCTGCAGCTCTCAAACAGTCCCGTCGGGTAAATCGCCGCC CCCACTGCCCCCATGGCCGCCGCCGCCGCCTCTGCCAGCGCTGCCTCCCT ACCGTCGCAGTTTGCCGCTGCCACTGCCACCACCGCGTGGCCACTGCGGC CACGGTGTTTCATGTGTAACTTCGAAGTATATGTACTGTCTGTATGTACT CACGCCGGGCAGGGTTGCCACATGTCCTGTGCATGCCGGCGCCCAAGCTG TGTGCATACTGCCCGCACCCTCCATGCCGCAATGACGTTTGCCGCCGCCG CCAAAGCTGCCGCCATGTCCGCCGATGCCTCTGATGCCAGCTGGTCGCGC CCCGGCTACCGCCACCTTTTGTCCCTGCGGCTGCCGCCGTAACCCTCTGC CGCTGCCGTTGGCCACCGTGTTTTGTTGCGTTCGTTCGGACACTGCCCAC CCCCCCTTGTGGCCTCAGGCAGTGGGTCGCGCGGAAGCCGGGGGCATGGC GCCATGCTGGTGTGCGACAATGCGGTGAGGGTTTGCTGCTGTATGCAAGT AGTGCCATGTGGTGCAGTAGTTTTTGGAAGGAAGATAAAAAGCGAGTGGA ACAGAGGAGGTGTGCGACAATGCGGCGCGGGCTACTGCTGTATGCACGTA GTGCTATGTAGTACCGTAGTTCTGTGCTCACGGTTGCTGTGGTTCTAGGT TCAAAGGAGGGTTGCTGCTGTATGCACGTACTGTAGTGCTATGCAGTACT GTGGTTCTGTACGAGTGCTCACGCAGCTGTGGTTCTAAGTTCTAAGTATA TGGCTCTATGGCAACGATACGTGCCGTACGAGTATTCAGTGAAGAGGCTC CGTGCCTGGTAGGCCGAGCGGGGCTTAGCACAGTGTTGTCGGAGTACCAT AGTATAGGTCACTGCCACACTTGCAGTAGGACTCGTACACGTCATCTACT GTATATTGACGGTGGTGGTGCTGCTGCCACCGCCCGAGTGCTTGCGCATT ACCCAAGGACGGCAGCATGCGAGACAGTACAGTACTGCTGTGCTGTGTCT AGTACAGTAGTGTACATATCCTCTATATACTGTACTGTACAGGACCTGGT GCTTCAAAGTACTTTGAAGTACTTCGAAGTACTTGCTGGAAGGATACGGC GTCTCCCTGCATGTGATATGATTGATGGGTGATGTGGAAGGAGTGGTCCA TGCGGGGTGCACGTGCTTTCCCGCAAGACATGTGTGCACTGCAGCAGTAG CTCTTTGCAAACTCAGGTGCTCAAGTCTGCCGAGCACAAGTACTCGTACT TACAGTACAGTACAGTACAGTACACTGCCATGCAGTGCAGTACAGTATGG TACAGTACAGTACAGTGCAGTACAGTACAGTGCAGTACAGTACAGTGCAG TGCAGCAAAGTAGTGTAGTACATTACATCACAGTACAGCACAGCACAGTG TGGTACAGTACAGTACAGTGCAGCACAGTACACTACAGTACAGCACAGTC CTACAGAAGTACAGTAGCACTCGGGCCACTGTACCGATGCACTGTACTAG TAGTTGACAGACACCTTGGTACGACTACATAGGTACCAGCTAATCGTTGC ATAGAGCACTACGGTACGTATGCTTGGAGCGGAGCGTAGACAGTATGGAC AGAAACAACACAGGGCGAGGTACGGGCCACGCCACTAAAGACCTCAGTAG TGGCCCTTCTTTAGCTTGCCAGCGAAGCGTGTGGGGAAGGGGAGGAGGAG GAGGAGGACGAGGACGAGGACGAAGAGGAGGAAGGGGAGGAGGGAGGGGA GGGGGGGAGGGGGGGAGGGGCTTGGGAGCAGCATGGTATAGACTGTTGTG TGCAGTAGTATAGCAGTCGTATCACGGCTATGGCAAGCACAAGCGGAGTG TGCACGCAGCGTGCACACACACACCCAAATATGCGCGCACGCGATTTTTC CCGTCTGGGCTTCTTGCCGTGCTTTGGCTCACTCCCGCAGTCTGCAAATC CCTTCCCGCCTGCCTTCAACACACACACACACACCGGCCTATGCTCGCTG CCGTGCCCCCCTCGCCTCACTATCTATCCCCCCCAAATTGTCGTGGCTTC CTCTCCCAGTCGAGGTCTGTCTGATCTTGCACTCTTCTCTTGGTTCTGTT GGCGTCAACAGAACCGGTTCTGATTGGATTTCAAGGGTCGATTGCCATCG GCTTATACTCCGTAGGCACTGCGGGGATTCGCGAGACCGTTTGATTGCCC CAATTGCTCCGTACACTACTGCCCTGCATTGCACTGCGCCTGCCTCGCCC GCCTCGAACCCCCCCCCCCCAACCTCCCTGCACGGCCCCCTCATCCAGAT CGGGGGCGGTTCCCTCCCCGTGCTGCGGACGCTGCGCTCCCTCCTGAGAA CGGGGGATGAGCTGCGGGTCATTGAGGCCTGCCTCTCGGGGACGCTCACC TACATACTGGACCAGGCGTGTGCATCCCCGAACCATTCAACCTATCCCTG TACTCGAGTACATAGGGGACCCCGCCCCGTTCTTTCTTTGTTTTGTTTTC TTTTCGCCCTGCGAGGGGAAGGAGGGCTTCGTTGAGTCCCGTTTCGGGAC GAGCCTTTTGGCACAGGGCCTGGAACTCGCCTGCTTATCTACCACTCAAA TAGGGTACTGTACTCCTACTCGTAGACCTGCTTGTACGTACTTGAGTAGA AGTACATACTACGAACGTACAGAGCACTCTACTTACTGCGGTTTGACATG ACATTCCATCCAATTTGGAGGGGTGAGGCACTCTTGGTTTTGCTGCGCTG CTGTTTGCTTCCGAGCATGCTCCCAGGCACCGTACCCGGCAATACTTCCA AGCCGCTGCCTTGTACTCGCCGCGAACCACGCGCATGCGGGCACCTCGCA GCAACCAGCTCCCCTCCGCGCAGAACACTGAAACCGTGCGCGGATGTGTT GGATGGCGCTGCAACTGCACCACACCCTCGGCAGGTCTCGGTGCGCGGGC TGCCGCTGTCCGAGGTGGTGGCGGAGGCGTGCACGAGCCACGAGACGCGC CTCAACACGGGCCGGGGGCTGTGGGAGGTTCTCTCCGGCAGGGACGTGTG CCGCCGTCTGCAGGCAGGTCTCCCCCCCCCCCACCCCCCCCACCGGCAGC GGCAAGCGTTGGAAAATTTCATCCATTGTGTGCGTGAAGTACTTTGCGCC GGGAAGTAGTACGAGTACTATGTAGTGCTACGTAATACAAAGTACAGTTG TCAACGTACGAAGTACTACAGTAGTACTAATAGTATCTGCTTGTCATTCC AAGCACTTCATACCCTTTCGCCCCGTTGTCCCTGGACACCGCGCGGTAGC TTGTACGTGCTCAACCCGTTTCCTTAGCTCTGTGTGCCCCCCCGGGGGGC CAACTACTGTAAGGGTTGAAAGTGAACAGACAGTGCTGCTGCATGCAGGC CGGTTGTGTGTGTGTTTGTGTGTGTTTGGTTTGAAGGCTTGGTCCGCCCC ATTCCCCCCCCGTAGAGGGCACATGTAGATGTGCTGAAAGACCCTGGCCA AGTGCTGGATGCCGCTTTGGATGGCGCGTGCGGGTGGGAAAAGAGGTGCC GGTGTCTGCAGGAGGTGGTTTTTCTGGGCGAGATGTCTGCCGTGTAGAGT GGAGATGAGGCCGTAGCGGTTTCCCCCAGTAGCTACTTCTAGGATACTTC GAAGTAAGTAGTAGGAACGTTTGCTCCTGGCCTCCCGAGACAGCTCGTGG TCTTGCTTACGTTTGTACGAGTGCAAGATGTGGCCATGACAAGCAAGCAA CGCCTGGGTAAAGTTACTGTACAGCTGCAGTCAGCGTGTACTACAGTAGT AGTACAGTATTAACAGGATAATTGCAACACAGGGCGAAGTGCAGGCCACG TCACCAAAGACCTCAACAGTGGCCCTTCCTTAGCTCGCCAGGGGAGGGGG TTGTGTGTGGGAACAGTAGTACGCCTACATTGTACGACTACTTCCGGAAG CAATATGCAGCCCTAGAGCTCTAGTGTACACTACGGCATCGGTTGAGAAG ACTGCAACCGCAGACGAGGTTCTGCCCCCCCCCCCCCGTGGGCCATAGTC CTCATGGACACACATACCCTAGTATTTAGACCGGACCTGCCTGCCCTCCT TTGCCCCCCCGGGCGGCACGCCACGCCACGTGCGAAATAGCCTCCTCAGG CTGTCAGCGGCATTGGCCGCACCAACACCCTCCCATTCTGTGCCCTCAAC TCACCTGCCCGCCTCTGCCAGCGTCAGCTTGCTCTCCCAACAACACGCTC GCGCACCTCTCGACGGATGCCCCCCCGGCTCGGTCGACTCTGACACTTGC CGCTGAAAATCGCAGCTGCTACTGAGGGAGCTCGGACTCGGTCTTGTCCC CCTGGAAGACATGGAGGTTTCGCCCGTGGTGCCCGAGGACACCGCACCCA TTACCCCCACCGCCGCCACAACCGCCGACGCCGAATCGGATGCAGCGGCT GTGGCAGCCGCCGCCCCCTCCGCCGGCGAGCTGGACCCAGCCATGGCCGC CGCCGCTGCCGCCGCCGCTGCAGCACCAAAGGCCGCTGCAGCCGAGGACT CGCCGTCTGCCTTGAGCTGCGGGCGTGGCGCCCTGGGGGGCGCAACTGCT AGTGCAGCCCCCGCCGCCGCCGCCTCCGTCGCGCTACGTGCGCACGATGC CGCCTTTGCCGCGCGAGTGGCGGCTGCCGCGAGCGAGGGCCGCCGGCTGC GCTACATCGCCCGGGTCGAGCTCCATCGTGACGGCGACGGCGGCAGCGGC GGTGGCGGCAACGGCGGCCAGGGCGGTGACGGTCATGGCGGCGATGGCCG TGGCGATGACCGTGGGGATGCATGGCCGCGGCCACGGCCAGTGACCGCCG CGGCGGTGGGGGCGGTGGCGGCGCCGGCGGCAGCTGCGGCTTCGGGAGCA GTGTCTGTTCGCGCTAGGGCGGGGCTGGTGGCGGTGGGGGACGACCACCC GGCGTTCGGGCTGCGCCGGACGCAGATTTTGGTGGCAGTGTCGAGCGAGC GGCAGCCGGGGGGGCTGGTGCTTCAAGGGGCGGGGGCGGGAGCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig10:3124757..3131001+

>mRNA_S-ischiensis_contig10.1613.1 ID=mRNA_S-ischiensis_contig10.1613.1|Name=mRNA_S-ischiensis_contig10.1613.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2448bp|location=Sequence derived from alignment at S-ischiensis_contig10:3124757..3131001+ (Schizocladia ischiensis KU_0333)
TCTCCGTCCCCGCCTGTTTCCTCGTTGTCCTCGTGCTGCTCATCCCCGTC
GTCGCCCTCCTCAGTGCATCATGGCAAGGTGTGCTCGCCGCCCCCAGCTG
CCTGTTGGACGTCCATGTCGCTGGGGTCAAAGGCGGAGGCGCATGTGCCG
GCGATGGCGGCAGCGGCGGCAGTGCCCCACGGGCCGGGGCCAGTCTCCGT
CCCCGCCTGTTTCCTCGTTGTCCTCGTGCTGCTCATCCCCGTCGTCGCCC
TCCTCAGTGCATCATGGCAAGGTGTGCTCGCCGCCCCCAGCTGCCTGTTG
GACGTCCATGTCGCTGGGGTCAAAGGCGGAGGCGCATGTGCCGGCGATGG
CGGCAGCGGCGGCAGTGCCCCACGGGCCGGGGCCAGGCAGTGGGTCGCGC
GGAAGCCGGGGGCATGGCGCCATGCTGGTGTGCGACAATGCGGCAGTGGG
TCGCGCGGAAGCCGGGGGCATGGCGCCATGCTGGTGTGCGACAATGCGAT
CGGGGGCGGTTCCCTCCCCGTGCTGCGGACGCTGCGCTCCCTCCTGAGAA
CGGGGGATGAGCTGCGGGTCATTGAGGCCTGCCTCTCGGGGACGCTCACC
TACATACTGGACCAGATCGGGGGCGGTTCCCTCCCCGTGCTGCGGACGCT
GCGCTCCCTCCTGAGAACGGGGGATGAGCTGCGGGTCATTGAGGCCTGCC
TCTCGGGGACGCTCACCTACATACTGGACCAGGTCTCGGTGCGCGGGCTG
CCGCTGTCCGAGGTGGTGGCGGAGGCGTGCACGAGCCACGAGACGCGCCT
CAACACGGGCCGGGGGCTGTGGGAGGTTCTCTCCGGCAGGGACGTGTGCC
GCCGTCTGCAGGTCTCGGTGCGCGGGCTGCCGCTGTCCGAGGTGGTGGCG
GAGGCGTGCACGAGCCACGAGACGCGCCTCAACACGGGCCGGGGGCTGTG
GGAGGTTCTCTCCGGCAGGGACGTGTGCCGCCGTCTGCAGCTGCTACTGA
GGGAGCTCGGACTCGGTCTTGTCCCCCTGGAAGACATGGAGGTTTCGCCC
GTGGTGCCCGAGGACACCGCACCCATTACCCCCACCGCCGCCACAACCGC
CGACGCCGAATCGGATGCAGCGGCTGTGGCAGCCGCCGCCCCCTCCGCCG
GCGAGCTGGACCCAGCCATGGCCGCCGCCGCTGCCGCCGCCGCTGCAGCA
CCAAAGGCCGCTGCAGCCGAGGACTCGCCGTCTGCCTTGAGCTGCGGGCG
TGGCGCCCTGGGGGGCGCAACTGCTAGTGCAGCCCCCGCCGCCGCCGCCT
CCGTCGCGCTACGTGCGCACGATGCCGCCTTTGCCGCGCGAGTGGCGGCT
GCCGCGAGCGAGGGCCGCCGGCTGCGCTACATCGCCCGGGTCGAGCTCCA
TCGTGACGGCGACGGCGGCAGCGGCGGTGGCGGCAACGGCGGCCAGGGCG
GTGACGGTCATGGCGGCGATGGCCGTGGCGATGACCGTGGGGATGCATGG
CCGCGGCCACGGCCAGTGACCGCCGCGGCGGTGGGGGCGGTGGCGGCGCC
GGCGGCAGCTGCGGCTTCGGGAGCAGTGTCTGTTCGCGCTAGGGCGGGGC
TGGTGGCGGTGGGGGACGACCACCCGGCGTTCGGGCTGCGCCGGACGCAG
ATTTTGGTGGCAGTGTCGAGCGAGCGGCAGCCGGGGGGGCTGGTGCTTCA
AGGGGCGGGGGCGGGAGCGCTGCTACTGAGGGAGCTCGGACTCGGTCTTG
TCCCCCTGGAAGACATGGAGGTTTCGCCCGTGGTGCCCGAGGACACCGCA
CCCATTACCCCCACCGCCGCCACAACCGCCGACGCCGAATCGGATGCAGC
GGCTGTGGCAGCCGCCGCCCCCTCCGCCGGCGAGCTGGACCCAGCCATGG
CCGCCGCCGCTGCCGCCGCCGCTGCAGCACCAAAGGCCGCTGCAGCCGAG
GACTCGCCGTCTGCCTTGAGCTGCGGGCGTGGCGCCCTGGGGGGCGCAAC
TGCTAGTGCAGCCCCCGCCGCCGCCGCCTCCGTCGCGCTACGTGCGCACG
ATGCCGCCTTTGCCGCGCGAGTGGCGGCTGCCGCGAGCGAGGGCCGCCGG
CTGCGCTACATCGCCCGGGTCGAGCTCCATCGTGACGGCGACGGCGGCAG
CGGCGGTGGCGGCAACGGCGGCCAGGGCGGTGACGGTCATGGCGGCGATG
GCCGTGGCGATGACCGTGGGGATGCATGGCCGCGGCCACGGCCAGTGACC
GCCGCGGCGGTGGGGGCGGTGGCGGCGCCGGCGGCAGCTGCGGCTTCGGG
AGCAGTGTCTGTTCGCGCTAGGGCGGGGCTGGTGGCGGTGGGGGACGACC
ACCCGGCGTTCGGGCTGCGCCGGACGCAGATTTTGGTGGCAGTGTCGAGC
GAGCGGCAGCCGGGGGGGCTGGTGCTTCAAGGGGCGGGGGCGGGAGCG
back to top