mRNA_S-ischiensis_contig10.1603.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: A0A5N5T0X4_9CRUS (BRCA1-associated RING domain protein 1 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5T0X4_9CRUS) HSP 1 Score: 94.7 bits (234), Expect = 2.780e-17 Identity = 69/240 (28.75%), Postives = 114/240 (47.50%), Query Frame = 1
Query: 28 QVAGPPGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVF---PTVEGL--VDSPKPHKMV------------VFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRVLP 696
Q GP S+ +V++ SG+S + K++++ + KL ++ + VTHV+ NE + R+ KY++GV SGKWI+S++W CL GG V+ D+E+ G P AP K R+ ++TK GLF G FG P +++L +V A P E + +D P+ ++A G E ++ M +K L +WV + I S+ ++P
Sbjct: 407 QTLGPLQSK-IVILDSGLSVDQKKKLENVNKLLKVKLAKDFSNDVTHVIVNCDNESKVC--QRTVKYMMGVVSGKWILSDKWLDACLTMGGLVNPSDFEVEGPKSNPNCLAPSKGRV-NSTKMLPGLFSGCYIYFHGSFGGMLPSKKELENLVKAGGCVPLYREPNPESISEIDQTVPYHTAPDGPLSKCSHYCIYAEG---LNEPQVKYDMNHIKS------LPLSWVYECIDSWFLVP 633
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001C71361F (BRCA1-associated RING domain protein 1-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C71361F) HSP 1 Score: 89.0 bits (219), Expect = 2.100e-15 Identity = 61/226 (26.99%), Postives = 110/226 (48.67%), Query Frame = 1
Query: 43 PGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVF---PTVEGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPD-----AGVSVLTPAWVVDSISSFRVLP 696
P VV++ G+S L ++V+R++KL R+ + VTHV+ + +D+ + + R+ KY++ VASGKWI+S RW C+ + ++ E+YE+SG AP++AR + K GLF L G F + P ++++ ++ A + P E + D + G A + V+P A + L +W++D + F+++P
Sbjct: 378 PLQEKVVLLGYGLSSTLAKKVERLSKLLRARIVTDFSSDVTHVIAECA-QDKAVCQ-RTLKYMMAVASGKWILSHRWMEDCVSQELALNPEEYEVSGSTHNANTKAPKQART-NAAKMRPGLFNGCHVFLWGNFREPNPSKKEMEGLIKAGGGVILAREPNPESIPDKEQTVPYHSDPNGPLATCSHYIIYQEGSVEPQLKYDMAHIKSLPLSWLIDCVDHFQLVP 600
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001E672BC5 (BRCA1-associated RING domain protein 1-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672BC5) HSP 1 Score: 89.0 bits (219), Expect = 2.110e-15 Identity = 66/236 (27.97%), Postives = 105/236 (44.49%), Query Frame = 1
Query: 58 VVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKM-----------------------VVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRVLP 696
+V++ SG+S E +++D +AKL RV + VTH++ + E ++ R+ KY++GV SGKWI+S W CL + V+ + YE+ G AP KAR +H K GLF L G F + P ++ L ++ A TV LV P P + +++ G E +L MA +K L +W+ I +F ++P
Sbjct: 388 IVLLGSGLSAENLRKLDNLAKLLRARVTSEFSMDVTHIIAHCTQE--RIVSQRTLKYMMGVVSGKWILSHTWMDDCLSQEQAVNPQPYEVIGSSHNSTSSAPAKAR-SHVEKMHPGLFNGCHMFLWGNFCEPYPNKKGLEAIIKAGGGTV------LVREPNPESISEKEQTVPFYSDENSVLNSCSHYIIYQDG---VVEPQLKYDMAHIKS------LPLSWLFSCIDNFELVP 605
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001FB7F409 (BRCA1-associated RING domain protein 1-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI001FB7F409) HSP 1 Score: 82.4 bits (202), Expect = 2.880e-13 Identity = 57/226 (25.22%), Postives = 102/226 (45.13%), Query Frame = 1
Query: 43 PGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAG---GGGAKEERELAKSMAKVKPD-----AGVSVLTPAWVVDSISSFRVLP 696
P VV++ SG+S + +R +KL R+ + VTHV+ + Q R+ KY++ +ASGKWI+S RW C+ + ++ E YE+SG +AP++AR + K GLF L G F + P ++++ ++ A + P+ + V + G A + V+P + L +W++D + F+++P
Sbjct: 378 PLQEKVVLLGSGLSSVQAKNFERFSKLLRARIVPDFSSDVTHVIAECVRD--QAVCQRTLKYMMALASGKWILSHRWMEDCITQELVINPEKYEVSGSNHNASSNAPKQART-NAAKMRPGLFNGCHMFLWGNFREPNPSKKEVEGLIRAGGGVILAREPNPESIPEKEQTVPYHSAPDGPLATCSHYIIYQEGSVEPQLKYDMTHIKSLPLSWLIDCVDHFQLVP 600
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: A0A2R5G0G9_9STRA (E3 ubiquitin-protein ligase LNX n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0G9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.030e-13 Identity = 68/228 (29.82%), Postives = 104/228 (45.61%), Query Frame = 1
Query: 64 VVMSGVSPELKQQ--VDRIAKLPHFRVEDTCTEAVTHVV--CGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTP--LRDAPRKARIAHTTK--TWAGLFCAHAFCLLGKF-GKSTPPREQLLTMVYANNATVFPT---VEGLVDSPKPHKMVVFAGGGGAKEERELAKS---MAKVKPDAGVSVLTPAWVVDSISSFRVLPTA 702
+V++ +S E ++Q VD I L H VE TE TH+V C ++AK R+ KY+ +A+G WIV RW ++ YE+ GD KT RD P+++R AH + GLF L G F G PP+ L ++ T+ +E + VV E + A+ A + V VLTP W+++S+S++ V T+
Sbjct: 934 IVLTSLSSEARRQNIVDDIYNL-HGEVELEDTERATHLVVPCIRKASQGRIAKARTLKYVRAIAAGLWIVDVRWVRDSANANAWLAEGPYEIQGDMKTIGLSRDGPKRSREAHAQDKDSGKGLFAGVTMFLCGSFAGSRVPPKRDLESIFAMCGGTLIRNRRDLEAARSAGASSMCVVLC------ENLDTARQDPHYAAITAQPNVRVLTPQWLLNSVSTYEVQDTS 1154
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI000F670FD8 (BRCA1-associated RING domain protein 1-like n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F670FD8) HSP 1 Score: 79.3 bits (194), Expect = 1.640e-12 Identity = 58/225 (25.78%), Postives = 101/225 (44.89%), Query Frame = 1
Query: 43 PGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAG---GGGAKEERELAKSMAKVKPD-----AGVSVLTPAWVVDSISSFRVL 693
P VV++ SG+S + +R +KL RV + VTHV+ + Q R+ KY++ VASGKWI+S RW C+ + ++ E YE+SG +AP++AR + K GLF L G F + P ++++ ++ A + P+ + V + G A + V+P + L +W++D + F+++
Sbjct: 173 PLQEKVVLLGSGLSSAQAKNFERFSKLLRARVILDFSSDVTHVIAECIQD--QAVCQRTLKYMMAVASGKWILSHRWMEDCITQDLVLNPERYEVSGSNHNASSNAPKQART-NAAKMRPGLFNGCHMFLWGNFREPNPSKKEVEGLIKAGGGVILAREPNPESIPEKEQTVPYHSTPDGPLATCSHYIIYQEGSVEPQLKYDMTHIKSLPLSWLIDCVDHFQLV 394
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001C4589DF (BRCA1-associated RING domain protein 1-like n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C4589DF) HSP 1 Score: 79.7 bits (195), Expect = 2.180e-12 Identity = 60/221 (27.15%), Postives = 97/221 (43.89%), Query Frame = 1
Query: 58 VVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVF-------AGGGGAKEERELAKSMAKVKPD-AGVSVLTPAWVVDSISSFRVLP 696
+V+ G+S E + +D +AK R+ + VTH++ E ++ R+ KY++GV SGKWI+S W C+ + ++ + YE+ G AP+KARI + GLF L G F P R++L T++ A V P+ + V F G + S ++K D A + L W+ I F++LP
Sbjct: 387 IVLSGCGLSTEQTRILDNLAKELRARMVTDFSPEVTHIIANCMTE--RIVHQRTLKYMMGVVSGKWILSHTWMDDCVSQEVALNPQPYEVLGSTHNTFSCAPKKARI-NAEIMRPGLFNGCHMFLWGNFSDPYPSRKELETLIKAGGGIVLAREPNPESIPEKEQTVPFHSNVDDPLGNCSHYILYQEGNSEPQIKYDMAHIKSLPLIWLYSCIERFQLLP 604
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: A0A6S7H4M2_PARCT (Breast cancer type 1 susceptibility isoform X1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H4M2_PARCT) HSP 1 Score: 69.3 bits (168), Expect = 6.920e-9 Identity = 47/193 (24.35%), Postives = 84/193 (43.52%), Query Frame = 1
Query: 112 IAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRV 690
+AK R+ +E TH++ ++ + K + KYLLG+A GKWIVS+ W C++ G + + YE+ GD + P AR K LF + G+F + P + + Y + + E L + ++V +++ K + K VS WV DS++++++
Sbjct: 1346 LAKRNGGRMSGDVSEETTHIIMPTDSKMQASRKNYTIKYLLGIALGKWIVSQHWITACVKSGRLLDEKQYEVKGDVEAAQSHVPNMARTTRENKG-PQLFDGVSVVCFGEFNPAISPDQVCQLVRYCGGKIIDFSHELLKANSTMSDLIVICDLALSQKTGLQIKDLCKRYSTFPVSA---EWVTDSVANYQL 1534
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: F2TXF4_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TXF4_SALR5) HSP 1 Score: 67.8 bits (164), Expect = 1.810e-8 Identity = 60/240 (25.00%), Postives = 103/240 (42.92%), Query Frame = 1
Query: 52 RDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAP--------RKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVD-SPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRVLPTAGKDLASKEKGVPYL 744
R V++++GV +++Q+ IA V E+VTHV+ L ++ L + K ++G+ASGKWIVS W + C + + E +E+ G +P AP R +R++ + L G+F +S + + + TV P + + P V+ + E E+ S+ V D V W+VDS+++ V A L ++E P L
Sbjct: 614 RACVLLLTGVPRDVEQRARAIADAMGATVLSKFDESVTHVLAAL--DENHLLISNTLKVMMGIASGKWIVSPAWLYACDTENRRANEEAFEMQGLASSPSESAPPVPPSSGARSSRLSSSP-----LLTGFTIAFAGQF-ESPEIQSEFRRVASLAGCTVVPLSAAVAACTTAPDTTVILVDS--ERVEDEVLDSLVDVPTDV---VRDFYWLVDSVTAHHVHSPANYVLDTEEDTAPNL 840
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI00106C878F (breast cancer type 1 susceptibility protein homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C878F) HSP 1 Score: 64.7 bits (156), Expect = 2.010e-7 Identity = 55/218 (25.23%), Postives = 92/218 (42.20%), Query Frame = 1
Query: 49 SRDVVVVMSGVSPELKQQ----VDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRV 690
SR V + + V L +Q D +AK +V +E TH++ ++ K + KYLLGVA GKWIVS+ W C++ G V + +E+ GD + P AR K LF + G+F + + Q+ +V V E + P ++V ++ K + K VS W+ DS++++++
Sbjct: 1239 SRSVKLPLCFVLTRLPKQFVSLADYLAKRNGGKVSSDVSEETTHLIMPTDSKMHASRKNYTIKYLLGVALGKWIVSQLWLAACVKSGQLVDEKRFEVKGDVEAAQSHVPNLARTTRENKDPL-LFDGISVVCFGEFNGAIS-QGQIGQLVQYCGGEVIDNQEFIKHRPPVFDLIVICDTILSQRTGLQIKDLCKRHRTFPVS---SEWITDSVANYQL 1451 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1603.1 >prot_S-ischiensis_contig10.1603.1 ID=prot_S-ischiensis_contig10.1603.1|Name=mRNA_S-ischiensis_contig10.1603.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=231bp MSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSback to top mRNA from alignment at S-ischiensis_contig10:2998117..3000302+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1603.1 ID=mRNA_S-ischiensis_contig10.1603.1|Name=mRNA_S-ischiensis_contig10.1603.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2186bp|location=Sequence derived from alignment at S-ischiensis_contig10:2998117..3000302+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:2998117..3000302+ >mRNA_S-ischiensis_contig10.1603.1 ID=mRNA_S-ischiensis_contig10.1603.1|Name=mRNA_S-ischiensis_contig10.1603.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1386bp|location=Sequence derived from alignment at S-ischiensis_contig10:2998117..3000302+ (Schizocladia ischiensis KU_0333)back to top |