mRNA_S-ischiensis_contig10.1603.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1603.1
Unique NamemRNA_S-ischiensis_contig10.1603.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: A0A5N5T0X4_9CRUS (BRCA1-associated RING domain protein 1 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5T0X4_9CRUS)

HSP 1 Score: 94.7 bits (234), Expect = 2.780e-17
Identity = 69/240 (28.75%), Postives = 114/240 (47.50%), Query Frame = 1
Query:   28 QVAGPPGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVF---PTVEGL--VDSPKPHKMV------------VFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRVLP 696
            Q  GP  S+ +V++ SG+S + K++++ + KL   ++    +  VTHV+    NE +     R+ KY++GV SGKWI+S++W   CL  GG V+  D+E+ G    P   AP K R+ ++TK   GLF        G FG   P +++L  +V A         P  E +  +D   P+               ++A G     E ++   M  +K       L  +WV + I S+ ++P
Sbjct:  407 QTLGPLQSK-IVILDSGLSVDQKKKLENVNKLLKVKLAKDFSNDVTHVIVNCDNESKVC--QRTVKYMMGVVSGKWILSDKWLDACLTMGGLVNPSDFEVEGPKSNPNCLAPSKGRV-NSTKMLPGLFSGCYIYFHGSFGGMLPSKKELENLVKAGGCVPLYREPNPESISEIDQTVPYHTAPDGPLSKCSHYCIYAEG---LNEPQVKYDMNHIKS------LPLSWVYECIDSWFLVP 633          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001C71361F (BRCA1-associated RING domain protein 1-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C71361F)

HSP 1 Score: 89.0 bits (219), Expect = 2.100e-15
Identity = 61/226 (26.99%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   43 PGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVF---PTVEGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPD-----AGVSVLTPAWVVDSISSFRVLP 696
            P    VV++  G+S  L ++V+R++KL   R+    +  VTHV+   + +D+ + + R+ KY++ VASGKWI+S RW   C+ +   ++ E+YE+SG        AP++AR  +  K   GLF      L G F +  P ++++  ++ A    +    P  E + D  +         G  A     +      V+P      A +  L  +W++D +  F+++P
Sbjct:  378 PLQEKVVLLGYGLSSTLAKKVERLSKLLRARIVTDFSSDVTHVIAECA-QDKAVCQ-RTLKYMMAVASGKWILSHRWMEDCVSQELALNPEEYEVSGSTHNANTKAPKQART-NAAKMRPGLFNGCHVFLWGNFREPNPSKKEMEGLIKAGGGVILAREPNPESIPDKEQTVPYHSDPNGPLATCSHYIIYQEGSVEPQLKYDMAHIKSLPLSWLIDCVDHFQLVP 600          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001E672BC5 (BRCA1-associated RING domain protein 1-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672BC5)

HSP 1 Score: 89.0 bits (219), Expect = 2.110e-15
Identity = 66/236 (27.97%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   58 VVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKM-----------------------VVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRVLP 696
            +V++ SG+S E  +++D +AKL   RV    +  VTH++   + E  ++   R+ KY++GV SGKWI+S  W   CL +   V+ + YE+ G        AP KAR +H  K   GLF      L G F +  P ++ L  ++ A   TV      LV  P P  +                       +++  G     E +L   MA +K       L  +W+   I +F ++P
Sbjct:  388 IVLLGSGLSAENLRKLDNLAKLLRARVTSEFSMDVTHIIAHCTQE--RIVSQRTLKYMMGVVSGKWILSHTWMDDCLSQEQAVNPQPYEVIGSSHNSTSSAPAKAR-SHVEKMHPGLFNGCHMFLWGNFCEPYPNKKGLEAIIKAGGGTV------LVREPNPESISEKEQTVPFYSDENSVLNSCSHYIIYQDG---VVEPQLKYDMAHIKS------LPLSWLFSCIDNFELVP 605          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001FB7F409 (BRCA1-associated RING domain protein 1-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI001FB7F409)

HSP 1 Score: 82.4 bits (202), Expect = 2.880e-13
Identity = 57/226 (25.22%), Postives = 102/226 (45.13%), Query Frame = 1
Query:   43 PGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAG---GGGAKEERELAKSMAKVKPD-----AGVSVLTPAWVVDSISSFRVLP 696
            P    VV++ SG+S    +  +R +KL   R+    +  VTHV+     +  Q    R+ KY++ +ASGKWI+S RW   C+ +   ++ E YE+SG       +AP++AR  +  K   GLF      L G F +  P ++++  ++ A    +          P+  + V +     G  A     +      V+P        +  L  +W++D +  F+++P
Sbjct:  378 PLQEKVVLLGSGLSSVQAKNFERFSKLLRARIVPDFSSDVTHVIAECVRD--QAVCQRTLKYMMALASGKWILSHRWMEDCITQELVINPEKYEVSGSNHNASSNAPKQART-NAAKMRPGLFNGCHMFLWGNFREPNPSKKEVEGLIRAGGGVILAREPNPESIPEKEQTVPYHSAPDGPLATCSHYIIYQEGSVEPQLKYDMTHIKSLPLSWLIDCVDHFQLVP 600          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: A0A2R5G0G9_9STRA (E3 ubiquitin-protein ligase LNX n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0G9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.030e-13
Identity = 68/228 (29.82%), Postives = 104/228 (45.61%), Query Frame = 1
Query:   64 VVMSGVSPELKQQ--VDRIAKLPHFRVEDTCTEAVTHVV--CGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTP--LRDAPRKARIAHTTK--TWAGLFCAHAFCLLGKF-GKSTPPREQLLTMVYANNATVFPT---VEGLVDSPKPHKMVVFAGGGGAKEERELAKS---MAKVKPDAGVSVLTPAWVVDSISSFRVLPTA 702
            +V++ +S E ++Q  VD I  L H  VE   TE  TH+V  C       ++AK R+ KY+  +A+G WIV  RW          ++   YE+ GD KT    RD P+++R AH     +  GLF      L G F G   PP+  L ++      T+      +E    +      VV        E  + A+     A +     V VLTP W+++S+S++ V  T+
Sbjct:  934 IVLTSLSSEARRQNIVDDIYNL-HGEVELEDTERATHLVVPCIRKASQGRIAKARTLKYVRAIAAGLWIVDVRWVRDSANANAWLAEGPYEIQGDMKTIGLSRDGPKRSREAHAQDKDSGKGLFAGVTMFLCGSFAGSRVPPKRDLESIFAMCGGTLIRNRRDLEAARSAGASSMCVVLC------ENLDTARQDPHYAAITAQPNVRVLTPQWLLNSVSTYEVQDTS 1154          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI000F670FD8 (BRCA1-associated RING domain protein 1-like n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F670FD8)

HSP 1 Score: 79.3 bits (194), Expect = 1.640e-12
Identity = 58/225 (25.78%), Postives = 101/225 (44.89%), Query Frame = 1
Query:   43 PGSRDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAG---GGGAKEERELAKSMAKVKPD-----AGVSVLTPAWVVDSISSFRVL 693
            P    VV++ SG+S    +  +R +KL   RV    +  VTHV+     +  Q    R+ KY++ VASGKWI+S RW   C+ +   ++ E YE+SG       +AP++AR  +  K   GLF      L G F +  P ++++  ++ A    +          P+  + V +     G  A     +      V+P        +  L  +W++D +  F+++
Sbjct:  173 PLQEKVVLLGSGLSSAQAKNFERFSKLLRARVILDFSSDVTHVIAECIQD--QAVCQRTLKYMMAVASGKWILSHRWMEDCITQDLVLNPERYEVSGSNHNASSNAPKQART-NAAKMRPGLFNGCHMFLWGNFREPNPSKKEVEGLIKAGGGVILAREPNPESIPEKEQTVPYHSTPDGPLATCSHYIIYQEGSVEPQLKYDMTHIKSLPLSWLIDCVDHFQLV 394          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI001C4589DF (BRCA1-associated RING domain protein 1-like n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C4589DF)

HSP 1 Score: 79.7 bits (195), Expect = 2.180e-12
Identity = 60/221 (27.15%), Postives = 97/221 (43.89%), Query Frame = 1
Query:   58 VVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVF-------AGGGGAKEERELAKSMAKVKPD-AGVSVLTPAWVVDSISSFRVLP 696
            +V+   G+S E  + +D +AK    R+    +  VTH++     E  ++   R+ KY++GV SGKWI+S  W   C+ +   ++ + YE+ G        AP+KARI +      GLF      L G F    P R++L T++ A    V          P+  + V F        G        +   S  ++K D A +  L   W+   I  F++LP
Sbjct:  387 IVLSGCGLSTEQTRILDNLAKELRARMVTDFSPEVTHIIANCMTE--RIVHQRTLKYMMGVVSGKWILSHTWMDDCVSQEVALNPQPYEVLGSTHNTFSCAPKKARI-NAEIMRPGLFNGCHMFLWGNFSDPYPSRKELETLIKAGGGIVLAREPNPESIPEKEQTVPFHSNVDDPLGNCSHYILYQEGNSEPQIKYDMAHIKSLPLIWLYSCIERFQLLP 604          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: A0A6S7H4M2_PARCT (Breast cancer type 1 susceptibility isoform X1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H4M2_PARCT)

HSP 1 Score: 69.3 bits (168), Expect = 6.920e-9
Identity = 47/193 (24.35%), Postives = 84/193 (43.52%), Query Frame = 1
Query:  112 IAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRV 690
            +AK    R+    +E  TH++    ++ +   K  + KYLLG+A GKWIVS+ W   C++ G  +  + YE+ GD +      P  AR     K    LF   +    G+F  +  P +    + Y     +  + E L  +     ++V      +++     K + K      VS     WV DS++++++
Sbjct: 1346 LAKRNGGRMSGDVSEETTHIIMPTDSKMQASRKNYTIKYLLGIALGKWIVSQHWITACVKSGRLLDEKQYEVKGDVEAAQSHVPNMARTTRENKG-PQLFDGVSVVCFGEFNPAISPDQVCQLVRYCGGKIIDFSHELLKANSTMSDLIVICDLALSQKTGLQIKDLCKRYSTFPVSA---EWVTDSVANYQL 1534          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: F2TXF4_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TXF4_SALR5)

HSP 1 Score: 67.8 bits (164), Expect = 1.810e-8
Identity = 60/240 (25.00%), Postives = 103/240 (42.92%), Query Frame = 1
Query:   52 RDVVVVMSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAP--------RKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVD-SPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRVLPTAGKDLASKEKGVPYL 744
            R  V++++GV  +++Q+   IA      V     E+VTHV+  L  ++  L    + K ++G+ASGKWIVS  W + C  +    + E +E+ G   +P   AP        R +R++ +      L         G+F +S   + +   +      TV P    +   +  P   V+       + E E+  S+  V  D    V    W+VDS+++  V   A   L ++E   P L
Sbjct:  614 RACVLLLTGVPRDVEQRARAIADAMGATVLSKFDESVTHVLAAL--DENHLLISNTLKVMMGIASGKWIVSPAWLYACDTENRRANEEAFEMQGLASSPSESAPPVPPSSGARSSRLSSSP-----LLTGFTIAFAGQF-ESPEIQSEFRRVASLAGCTVVPLSAAVAACTTAPDTTVILVDS--ERVEDEVLDSLVDVPTDV---VRDFYWLVDSVTAHHVHSPANYVLDTEEDTAPNL 840          
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Match: UPI00106C878F (breast cancer type 1 susceptibility protein homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C878F)

HSP 1 Score: 64.7 bits (156), Expect = 2.010e-7
Identity = 55/218 (25.23%), Postives = 92/218 (42.20%), Query Frame = 1
Query:   49 SRDVVVVMSGVSPELKQQ----VDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRSGKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRKARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTVEGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVDSISSFRV 690
            SR V + +  V   L +Q     D +AK    +V    +E  TH++    ++     K  + KYLLGVA GKWIVS+ W   C++ G  V  + +E+ GD +      P  AR     K    LF   +    G+F  +   + Q+  +V      V    E +   P    ++V      ++      K + K      VS     W+ DS++++++
Sbjct: 1239 SRSVKLPLCFVLTRLPKQFVSLADYLAKRNGGKVSSDVSEETTHLIMPTDSKMHASRKNYTIKYLLGVALGKWIVSQLWLAACVKSGQLVDEKRFEVKGDVEAAQSHVPNLARTTRENKDPL-LFDGISVVCFGEFNGAIS-QGQIGQLVQYCGGEVIDNQEFIKHRPPVFDLIVICDTILSQRTGLQIKDLCKRHRTFPVS---SEWITDSVANYQL 1451          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A5N5T0X4_9CRUS2.780e-1728.75BRCA1-associated RING domain protein 1 n=1 Tax=Arm... [more]
UPI001C71361F2.100e-1526.99BRCA1-associated RING domain protein 1-like n=1 Ta... [more]
UPI001E672BC52.110e-1527.97BRCA1-associated RING domain protein 1-like n=1 Ta... [more]
UPI001FB7F4092.880e-1325.22BRCA1-associated RING domain protein 1-like n=2 Ta... [more]
A0A2R5G0G9_9STRA4.030e-1329.82E3 ubiquitin-protein ligase LNX n=1 Tax=Hondaea fe... [more]
UPI000F670FD81.640e-1225.78BRCA1-associated RING domain protein 1-like n=1 Ta... [more]
UPI001C4589DF2.180e-1227.15BRCA1-associated RING domain protein 1-like n=1 Ta... [more]
A0A6S7H4M2_PARCT6.920e-924.35Breast cancer type 1 susceptibility isoform X1 (Fr... [more]
F2TXF4_SALR51.810e-825.00Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
UPI00106C878F2.010e-725.23breast cancer type 1 susceptibility protein homolo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2998117..3000302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D8LPM9
KEGG koko:K10605,ko:K19403
KEGG Pathwayko01524,ko03440,ko03460,ko04120,ko04151,ko05206,ko05224,map01524,map03440,map03460,map04120,map04151,map05206,map05224
KEGG ModuleM00295
EggNOG free text desc.E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator
EggNOG OGsKOG4362@1,KOG4362@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03036,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBRCT domain-containing protein
Ec32 orthologEc-06_004760.1
Exons3
Model size1226
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1603.1prot_S-ischiensis_contig10.1603.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2998186..2999838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.615071-UTR-S-ischiensis_contig10:2998116..29981851622815537.615071-UTR-S-ischiensis_contig10:2998116..2998185Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2998117..2998185 +
1695739756.0635803-UTR-S-ischiensis_contig10:2998116..29981851695739756.0635803-UTR-S-ischiensis_contig10:2998116..2998185Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2998117..2998185 +
1622815537.6704578-UTR-S-ischiensis_contig10:2999838..30003021622815537.6704578-UTR-S-ischiensis_contig10:2999838..3000302Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2999839..3000302 +
1695739756.114082-UTR-S-ischiensis_contig10:2999838..30003021695739756.114082-UTR-S-ischiensis_contig10:2999838..3000302Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2999839..3000302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.6296842-CDS-S-ischiensis_contig10:2998185..29982381622815537.6296842-CDS-S-ischiensis_contig10:2998185..2998238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2998186..2998238 +
1695739756.0746107-CDS-S-ischiensis_contig10:2998185..29982381695739756.0746107-CDS-S-ischiensis_contig10:2998185..2998238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2998186..2998238 +
1622815537.641057-CDS-S-ischiensis_contig10:2998559..29988301622815537.641057-CDS-S-ischiensis_contig10:2998559..2998830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2998560..2998830 +
1695739756.0858684-CDS-S-ischiensis_contig10:2998559..29988301695739756.0858684-CDS-S-ischiensis_contig10:2998559..2998830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2998560..2998830 +
1622815537.653875-CDS-S-ischiensis_contig10:2999469..29998381622815537.653875-CDS-S-ischiensis_contig10:2999469..2999838Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2999470..2999838 +
1695739756.1042092-CDS-S-ischiensis_contig10:2999469..29998381695739756.1042092-CDS-S-ischiensis_contig10:2999469..2999838Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2999470..2999838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1603.1

>prot_S-ischiensis_contig10.1603.1 ID=prot_S-ischiensis_contig10.1603.1|Name=mRNA_S-ischiensis_contig10.1603.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=231bp
MSGVSPELKQQVDRIAKLPHFRVEDTCTEAVTHVVCGLSNEDEQLAKMRS
GKYLLGVASGKWIVSERWAFKCLEKGGPVSAEDYELSGDYKTPLRDAPRK
ARIAHTTKTWAGLFCAHAFCLLGKFGKSTPPREQLLTMVYANNATVFPTV
EGLVDSPKPHKMVVFAGGGGAKEERELAKSMAKVKPDAGVSVLTPAWVVD
SISSFRVLPTAGKDLASKEKGVPYLVNLES*
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mRNA from alignment at S-ischiensis_contig10:2998117..3000302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1603.1 ID=mRNA_S-ischiensis_contig10.1603.1|Name=mRNA_S-ischiensis_contig10.1603.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2186bp|location=Sequence derived from alignment at S-ischiensis_contig10:2998117..3000302+ (Schizocladia ischiensis KU_0333)
GCGAACCGTGCAGCGCTGCATGGCGGACAGGTGGCTGGGCCGCCGGGCTC ACGGGATGTGGTGGTGGTGATGAGTGGAGTGTCCCCAGAGCTCAAGCAGC AGGTGGATCGCATCGCCAAACTGTGAGTGACCGACTGCACCCCCTCGGCT GGCGGCGGCGGTGGCCGCCGCCGCCTACCGCGTCTCTGACAACCCCCCCG GGGCCCGCTTGTACGTTATGAGAGCGCACGTGATGAGGATTTGATGCTTT CGGGGAGCCTGGCAGTCTCGGTGGCTGCCTCATGGGTTGTCTCGTGACAT ATTTACTGTACTGCGGCTGGCTGCTCGCCGCCAGCCCTCCTCTGCTCTCA CTTGCGCCCCGTCACTGCCCCAGTTTGTCTCCTGGCTGAGGGACCCCTCC CCCCCCCGCGCGCGCTGCCCGTCCTGTCCTGCCCCACTGGCAGGCCTCAC TTCCGCGTGGAGGACACGTGCACCGAGGCGGTCACGCACGTCGTCTGCGG CCTGAGCAACGAGGACGAGCAGCTGGCCAAGATGCGCAGCGGCAAGTACC TGCTCGGGGTGGCGTCGGGCAAGTGGATCGTCTCGGAGAGGTGGGCCTTC AAGTGCCTGGAGAAGGGCGGCCCGGTGTCCGCCGAGGACTACGAGCTGAG CGGCGACTACAAGACCCCGCTGAGGGACGCCCCGCGCAAGGCGAGGATCG CGCACACTACCAAGGTGATTCCCTCCCGCGGCAGCAGTCAATCTCACGCA CGTGCGATTGTACCTCGCTACAATTTACTAAGTATATGAATCACCAAGGT AATTCCCTCCCGCGGCGCCTTTGCCGCGTCGGCGCCGTGGCTAACGGCGA CGGCTAAGCGGCGGCACTCTGATTGCCCCTCCTCGTCCACAGGCGGGCCG GCCCAGCGCCTCCGGGGCTGCCTGGTGGCGGTTGCCACACGCGTTGCGGA CGGTTCTTTTGTGAGGAGGGAAAAGTTAAGAAGCGGGTGGGAAACAGAGG CGTCTCTACTTGTGCGAACAAACAAATTGTAGGTTCGTACGGCGCGGTTT TCCATGTACTTAGAAGTGTAACTGCCAGTGTACTCTACGGAGTACTCGCA GCGCTGCAGCTGTACCTGGTGGATGTGCCCCTCCCACACCCTGCCCCTGG GGGGGGGCGTGCCGTTTCTATGGAAGGTGCACCCACGGCCCGCGTGGGCA ACGATAGCCTATGCCGTTCCCCGTTCAGCAGGCCAACGTTCGCGGTGATG GGTGGCTTGCATGGGTCTCACGCCCCCCTCCTCACCTCCCCCCTCCCTTG CCCTTTGCCTGCGCATTTTGTGTGTGCCCTGCCCCTTGCTTGCTCTCACC AAGACCTGGGCGGGCCTCTTCTGCGCGCACGCCTTCTGCCTGCTGGGGAA GTTTGGGAAGAGCACCCCACCGCGCGAGCAGCTGCTCACCATGGTCTACG CCAACAACGCCACCGTGTTCCCCACGGTGGAGGGGTTGGTGGACTCTCCC AAGCCCCACAAGATGGTCGTGTTTGCGGGGGGCGGCGGTGCCAAGGAGGA GAGAGAGCTCGCCAAGAGCATGGCCAAGGTCAAACCCGACGCGGGGGTGT CCGTGTTGACCCCGGCCTGGGTGGTGGACAGCATTAGCAGCTTCCGCGTG CTCCCTACCGCTGGCAAGGACCTGGCCAGCAAAGAGAAAGGAGTCCCTTA CCTAGTCAACCTGGAATCGTAGGATGGGTTCTTCGTAGTTGTAGCTGCAG TGGTGTATGACTTGCTTTTGTAAACTCAGGAGCTTCACCCCTGAGCCACC TGGCGGTTAGTGGTAACGCTGTAACGACGATACTGTCTGCCTGGAATTCC GGGCTTCCTGACCGACCGTGATTCCTGACCGACTGTGATTGGCGGTACGG CGTACCATTAGGCGCTCCCGCAGTGCCATAGGCACTCCTTCCCTCCAGCG AACGCGTGGCAATGGTCCCGCAGCTTGGTTAACGAGCACCTCGCCTCTGT GGGTGCTCATCCAGGCTTATGCGTGGATTTCCTTGAGAACTTGCATTCTG TGACGGCCGCGTCTTAACGCTGCAACGACGGTCAGGAAGCCCGACTTCCG CTTTCGCAAGGGGCTCGCGCCCTGACACTACTTTCAACTATCGTCAACGT ACCACCCACTGCCCGGCCCACCGCCCAACCCGCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2998117..3000302+

>mRNA_S-ischiensis_contig10.1603.1 ID=mRNA_S-ischiensis_contig10.1603.1|Name=mRNA_S-ischiensis_contig10.1603.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1386bp|location=Sequence derived from alignment at S-ischiensis_contig10:2998117..3000302+ (Schizocladia ischiensis KU_0333)
ATGAGTGGAGTGTCCCCAGAGCTCAAGCAGCAGGTGGATCGCATCGCCAA
ACTATGAGTGGAGTGTCCCCAGAGCTCAAGCAGCAGGTGGATCGCATCGC
CAAACTGCCTCACTTCCGCGTGGAGGACACGTGCACCGAGGCGGTCACGC
ACGTCGTCTGCGGCCTGAGCAACGAGGACGAGCAGCTGGCCAAGATGCGC
AGCGGCAAGTACCTGCTCGGGGTGGCGTCGGGCAAGTGGATCGTCTCGGA
GAGGTGGGCCTTCAAGTGCCTGGAGAAGGGCGGCCCGGTGTCCGCCGAGG
ACTACGAGCTGAGCGGCGACTACAAGACCCCGCTGAGGGACGCCCCGCGC
AAGGCGAGGATCGCGCACACTACCAAGGCCTCACTTCCGCGTGGAGGACA
CGTGCACCGAGGCGGTCACGCACGTCGTCTGCGGCCTGAGCAACGAGGAC
GAGCAGCTGGCCAAGATGCGCAGCGGCAAGTACCTGCTCGGGGTGGCGTC
GGGCAAGTGGATCGTCTCGGAGAGGTGGGCCTTCAAGTGCCTGGAGAAGG
GCGGCCCGGTGTCCGCCGAGGACTACGAGCTGAGCGGCGACTACAAGACC
CCGCTGAGGGACGCCCCGCGCAAGGCGAGGATCGCGCACACTACCAAGAC
CTGGGCGGGCCTCTTCTGCGCGCACGCCTTCTGCCTGCTGGGGAAGTTTG
GGAAGAGCACCCCACCGCGCGAGCAGCTGCTCACCATGGTCTACGCCAAC
AACGCCACCGTGTTCCCCACGGTGGAGGGGTTGGTGGACTCTCCCAAGCC
CCACAAGATGGTCGTGTTTGCGGGGGGCGGCGGTGCCAAGGAGGAGAGAG
AGCTCGCCAAGAGCATGGCCAAGGTCAAACCCGACGCGGGGGTGTCCGTG
TTGACCCCGGCCTGGGTGGTGGACAGCATTAGCAGCTTCCGCGTGCTCCC
TACCGCTGGCAAGGACCTGGCCAGCAAAGAGAAAGGAGTCCCTTACCTAG
TCAACCTGGAATCGTAGACCTGGGCGGGCCTCTTCTGCGCGCACGCCTTC
TGCCTGCTGGGGAAGTTTGGGAAGAGCACCCCACCGCGCGAGCAGCTGCT
CACCATGGTCTACGCCAACAACGCCACCGTGTTCCCCACGGTGGAGGGGT
TGGTGGACTCTCCCAAGCCCCACAAGATGGTCGTGTTTGCGGGGGGCGGC
GGTGCCAAGGAGGAGAGAGAGCTCGCCAAGAGCATGGCCAAGGTCAAACC
CGACGCGGGGGTGTCCGTGTTGACCCCGGCCTGGGTGGTGGACAGCATTA
GCAGCTTCCGCGTGCTCCCTACCGCTGGCAAGGACCTGGCCAGCAAAGAG
AAAGGAGTCCCTTACCTAGTCAACCTGGAATCGTAG
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