mRNA_S-ischiensis_contig10.1596.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1596.1
Unique NamemRNA_S-ischiensis_contig10.1596.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.240e-47
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKER 304
            MLPLSLLKTAQGQPMLVELKNGDTYNGRL+ CDSWMNIKL+DVI+TSRD DKFVK+ EVY RGN+IKY+TIP+EVLDMVQEEDLSKE+
Sbjct:    1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEK 88
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.690e-43
Identity = 69/88 (78.41%), Postives = 79/88 (89.77%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKER 304
            MLPLSLL+TAQ  PMLVELKNGDTYNGRL++CD+WMNIKLRDVIWTSRDGD+F KL EVY RG +IKY+TIPDEVL+MV EE+  KE+
Sbjct:    1 MLPLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEK 88
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.760e-42
Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKER 304
            MLPLSLLKTAQG PMLVELKNGDTYNGRL  CD+WMNI LRDVI TSRDGD+F K+ E Y RGN+IKYL +P+EV+DMV EEDL +ER
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.180e-41
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 2 
Query:   35 STMLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKE 301
            + MLPLSLL+TAQG PMLVELKNGDTYNGRL  CDSWMNI LR+VI TSRDGD+F KL E Y RGN+IKYL IP++V+D+VQEEDL +E
Sbjct:   12 AVMLPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQE 100
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 139 bits (349), Expect = 9.310e-41
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKE 301
            MLPLSLLKTAQG PMLVELKNGDTYNGRL  CDSWMNI LR+VI TSRDGD+F +L E Y RGN+IKYL IPDEV+DMV EE + KE
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKE 87
[Close]
BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.820e-40
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKE 301
            MLPLSLL+TAQG PMLVELKNGDTYNGRL  CDSWMNI LR+VI TSRDGD+F KL E Y RGN+IKYL IP++V+D+VQEEDL +E
Sbjct:   15 MLPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQE 101
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: C3ZIA6_BRAFL (U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZIA6_BRAFL)

HSP 1 Score: 136 bits (342), Expect = 2.250e-39
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKER 304
            MLPLSLLKTAQ  PMLVELKNG+TYNG LE CD+WMNIKLRDVI TSRDGD+F ++ E Y RG+ IKYL IPDEV+DMV+E+ +SK+R
Sbjct:    1 MLPLSLLKTAQNHPMLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYIRGSTIKYLRIPDEVIDMVKEDIVSKQR 88
[Close]
BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A6A5A0Z6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A0Z6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.610e-38
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 2 
Query:   23 ALVRSTMLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSK 298
            A  +S MLPLSLL+TAQG PMLVELK+GDTYNG+L  CD+WMNI L++VI T++DGD+F KL E Y RGN IKY+ IPDE+LDMV EEDL+K
Sbjct:   18 ATCQSAMLPLSLLQTAQGAPMLVELKSGDTYNGQLVNCDTWMNINLKEVICTAKDGDRFWKLPECYIRGNTIKYIRIPDEILDMVVEEDLTK 109
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BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A6A3LNI3_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.180e-38
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSK 298
            MLPLSLLKTAQG PMLVELKNGDTYNG L  CD+WMN+ LR+VI TS+DGD+F K+ E Y RGN IKY+ +P+E+LDMV EED SK
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSK 86
[Close]
BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Match: A0A7S0PUU0_9EUKA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PUU0_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 5.010e-38
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 2 
Query:   41 MLPLSLLKTAQGQPMLVELKNGDTYNGRLELCDSWMNIKLRDVIWTSRDGDKFVKLSEVYARGNAIKYLTIPDEVLDMVQEEDLSKER 304
            MLPLSLL+TAQG PMLVELKNG+TYNG L  CD+WMNI LR+VI TSRDGD+F +L EV  RGN IKYL IP+EV+DMV EEDLSK +
Sbjct:    1 MLPLSLLRTAQGHPMLVELKNGETYNGHLVSCDNWMNISLREVICTSRDGDRFWRLPEVIIRGNNIKYLRIPEEVIDMVPEEDLSKSK 88
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J7_ECTSI2.240e-4786.36U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E... [more]
A0A836C9X5_9STRA2.690e-4378.41U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T... [more]
W7TE23_9STRA8.760e-4277.27U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
A0A7S2FS84_9STRA7.180e-4175.28U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2UV99_9STRA9.310e-4178.16U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2E5C6_9STRA1.820e-4077.01U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
C3ZIA6_BRAFL2.250e-3973.86U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=B... [more]
A0A6A5A0Z6_9STRA1.610e-3869.57U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A6A3LNI3_9STRA2.180e-3872.09U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
A0A7S0PUU0_9EUKA5.010e-3873.86U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2977257..2978765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size307
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1596.1prot_S-ischiensis_contig10.1596.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2977257..2978765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815499.960693-CDS-S-ischiensis_contig10:2977256..29773781622815499.960693-CDS-S-ischiensis_contig10:2977256..2977378Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2977257..2977378 -
1695739736.4563334-CDS-S-ischiensis_contig10:2977256..29773781695739736.4563334-CDS-S-ischiensis_contig10:2977256..2977378Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2977257..2977378 -
1622815499.9776254-CDS-S-ischiensis_contig10:2978413..29785541622815499.9776254-CDS-S-ischiensis_contig10:2978413..2978554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2978414..2978554 -
1695739736.4646566-CDS-S-ischiensis_contig10:2978413..29785541695739736.4646566-CDS-S-ischiensis_contig10:2978413..2978554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2978414..2978554 -
1622815499.9951053-CDS-S-ischiensis_contig10:2978722..29787651622815499.9951053-CDS-S-ischiensis_contig10:2978722..2978765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2978723..2978765 -
1695739736.4735694-CDS-S-ischiensis_contig10:2978722..29787651695739736.4735694-CDS-S-ischiensis_contig10:2978722..2978765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2978723..2978765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1596.1

>prot_S-ischiensis_contig10.1596.1 ID=prot_S-ischiensis_contig10.1596.1|Name=mRNA_S-ischiensis_contig10.1596.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
LGRLPGSCAGSEHDAAFIPAQDCSGAAHAGGAKKWRYLQRAARAVRQLDE
YQAPGCHLDIKGRRQVCQAERGIRQGERHQIPHHPGRGAGHGAGGGSLQR
T*
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mRNA from alignment at S-ischiensis_contig10:2977257..2978765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1596.1 ID=mRNA_S-ischiensis_contig10.1596.1|Name=mRNA_S-ischiensis_contig10.1596.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1509bp|location=Sequence derived from alignment at S-ischiensis_contig10:2977257..2978765- (Schizocladia ischiensis KU_0333)
TTGGGCCGACTGCCGGGCAGCTGCGCTGGTTCGGAGCACGATGGTGAGCG
TGGGAATGATTCCCTTCGAGTGTTGCGACCAATCGCGGCGAGCTTGCCTG
ATGCCGCGAAACGGGGCCGTCCAATCCTGCACGCCGCTCAACGTTCAACA
TCAAAACCTCGTACCAACCCAACGTCTGGTGCAATCCCCGACCCGCGCCT
CGCGTTCCCAGCTGCCTTTATCCCTGCTCAAGACTGCTCAGGGGCAGCCC
ATGCTGGTGGAGCTAAAAAATGGCGATACCTACAACGGGCGGCTCGAGCT
GTGCGACAGTTGGATGAATATCAAGCTCCGGGATGTCATCTGGACATCAA
GGGTGAGACGATCCGGCCTCGATACGTTCTGGTGCAGACCATGACCGCCT
AGTTGTGTACAGAGGTAGCCACATTGGTATTTTTCAGCGGTGACAAGGAG
GTCTGTCATTGCGATGGGGCAACCCGTAGGCATGCCTGGTTCACGTGTGC
CGTTCCTTGGGCAACACCTTAAGTTTGTTGTGCGCCGCACCGCCACCGGG
CTCTTCTTTGTGAGTTCGCTGCCGGTCTTCTGGGCTGAAGTGATTACTGA
TACTGGGGAGGGGGGCTGGGGGATCTTCCTTCGCCCCTAACCCATGAAAG
CGAGCCTGCTCAATCCCGCAGCCGCGTAGTCACTGCTGACGTGCATGCTC
ACCGAGAGCCGTGTGTTGCATGTTTACACTTCCATGTGTGTGCCCCGTGT
GGGCGTACACTTGAATCTGGGGCCATGCATGCCTGCCTGCATGCATGTGT
GGGCGCGCGCGCGCGCGTGTGTGTGTGGCATGCCTGGTCGTGGGTGCTCA
ATGTGATGTTTGCCCGCCATGTTGAGTTCTGCTGGCTCACCACAGCCTGG
AGAGCCCGGTAGCCAACTCTATGCCATGTACAGTTCTTCCGTGCGCTGAC
ATACTTGTGAGTTAATAGTTATTTCCCTGCACAGTATTTTAAAATCATAT
TGCAAGCGCTTGGAGGTTCTGGGCCGGCCGCGTGGCTGTAGTTGGGGTGT
TGCTTGTCCAGGAAGGCGGGGGAAGGAAGGGGGCGCCGGTTCTGAGCGCC
AGAAAATGCTACACGACACGTGAGCACTCCAGCATACTGTACCTACGCTA
CAAGTGCATCTACTCCCCTCCGTTGCACGCTCCTTCCCTGGCGAGCCGCG
GAAGGGCCGCTGTTGAGGACGTTGCCGATGTGGTCCGCACCTCGCCCTGT
TTTGCTATTAACTATCCTGTCCGTACTTATATGTGCATGCCTCTGAGCGT
GAGCGCACTCGCACACACCCTCCCCCGGACGAACGGACCGCGCCGTTGCC
CCTCCCCTCTCCCCCCCCTTTCTCTCTTTGGTTATAGGACGGCGACAAGT
TTGTCAAGCTGAGCGAGGTATACGCCAGGGGGAACGCCATCAAATACCTC
ACCATCCCGGACGAGGTGCTGGACATGGTGCAGGAGGAGGATCTCTCCAA
AGAACGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2977257..2978765-

>mRNA_S-ischiensis_contig10.1596.1 ID=mRNA_S-ischiensis_contig10.1596.1|Name=mRNA_S-ischiensis_contig10.1596.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig10:2977257..2978765- (Schizocladia ischiensis KU_0333)
TTGGGCCGACTGCCGGGCAGCTGCGCTGGTTCGGAGCACGATGTTGGGCC
GACTGCCGGGCAGCTGCGCTGGTTCGGAGCACGATGCTGCCTTTATCCCT
GCTCAAGACTGCTCAGGGGCAGCCCATGCTGGTGGAGCTAAAAAATGGCG
ATACCTACAACGGGCGGCTCGAGCTGTGCGACAGTTGGATGAATATCAAG
CTCCGGGATGTCATCTGGACATCAAGGCTGCCTTTATCCCTGCTCAAGAC
TGCTCAGGGGCAGCCCATGCTGGTGGAGCTAAAAAATGGCGATACCTACA
ACGGGCGGCTCGAGCTGTGCGACAGTTGGATGAATATCAAGCTCCGGGAT
GTCATCTGGACATCAAGGGACGGCGACAAGTTTGTCAAGCTGAGCGAGGT
ATACGCCAGGGGGAACGCCATCAAATACCTCACCATCCCGGACGAGGTGC
TGGACATGGTGCAGGAGGAGGATCTCTCCAAAGAACGTGAGACGGCGACA
AGTTTGTCAAGCTGAGCGAGGTATACGCCAGGGGGAACGCCATCAAATAC
CTCACCATCCCGGACGAGGTGCTGGACATGGTGCAGGAGGAGGATCTCTC
CAAAGAACGTGA
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