mRNA_S-ischiensis_contig10.1586.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1586.1
Unique NamemRNA_S-ischiensis_contig10.1586.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.370e-24
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  154 AAEPTGPW--RKPWVQGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPAPA 420
            A    GPW  +KPWV G  R+Y++ YSEHSSF QL+DFV  +RP+ IVPTVNA   A+VE++L HFL+ MDL  DR+RL+SYF +  P  A
Sbjct:  357 AGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSA 447          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A7S2WPP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPP5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.550e-16
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  205 RMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSY 393
            R+Y V YSEHSSFPQL  FVG +RP  I PTVNA D A  +R++ HFL L+DLR D RR++ Y
Sbjct:   76 RLYMVPYSEHSSFPQLLQFVGRVRPLRITPTVNATDAAERDRLVRHFLHLLDLRADPRRMEYY 138          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: R1EKJ3_EMIHU (Lactamase_B domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EKJ3_EMIHU)

HSP 1 Score: 79.3 bits (194), Expect = 4.880e-15
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  181 KPWVQG--TVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSR 402
            KPWV+G  T RMY V YSEHSS+ +L+ FV ALRPR++VPTVNA+     ER+   +   MDL  D+ RLD +F R
Sbjct:  184 KPWVEGAGTTRMYGVPYSEHSSWEELQAFVAALRPRALVPTVNADTARDRERLQAAYAHAMDLAADKGRLDWHFRR 259          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A2P6TNP6_CHLSO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNP6_CHLSO)

HSP 1 Score: 80.5 bits (197), Expect = 6.390e-15
Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  115 ADAVGARLGKPPAAAEPTG-PWRKPWVQ-----GTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQ 408
            AD +     K   A +PTG  WR+         G+V++  V YSEHSSFP+LRD V ALRPR I+PTVNA D A+    +  F DLMDL  DR RL  Y  R Q
Sbjct:  682 ADRIEGTAWKRAVALKPTGWTWRQKGGLDVRDLGSVQLVGVPYSEHSSFPELRDCVRALRPRRIIPTVNAGDPASSRAQVDRFADLMDLSADRSRLSYYLLRSQ 785          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 6.420e-15
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  193 QGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPAP 417
            +G V +Y + YSEHSSF +LRD V  LRPR IVPTVNA+  AA   ++  F DLMDL  DR RLD +  + + AP
Sbjct:  288 EGDVAIYGIPYSEHSSFAELRDCVKTLRPRRIVPTVNASTPAAARSLVDRFADLMDLSKDRSRLDFFLRKAKTAP 362          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: Q00YR2_OSTTA (DNA repair metallo-beta-lactamase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q00YR2_OSTTA)

HSP 1 Score: 78.2 bits (191), Expect = 3.950e-14
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  181 KPWVQ--GTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILG-HFLDLMDLRHDRRRLDSYF 396
            +PW++  G  R YAV YSEHSS+ +LR+F+  L+P+ I PTVNA+     E+++  HFLDL+DL++D +R+D YF
Sbjct:  327 EPWIENEGRTRTYAVPYSEHSSYTELREFIKFLKPKRITPTVNASTENEREKLVNKHFLDLVDLKYDVKRIDFYF 401          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A2V0PNQ8_9CHLO (DNA cross-link repair protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PNQ8_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 5.380e-14
Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  163 PTGPW---RKP-----WVQGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDL-MDLRHDRRRLDSYFSR 402
            PTG W   RKP     W  G   +Y+  YSEHSSF  L+  V ALRPR IVPTVNA D AA   I+  F+   MDL  DRRRLD+YFS+
Sbjct:  338 PTG-WAYRRKPGPLPCWRLGAAALYSAPYSEHSSFSDLQACVRALRPRRIVPTVNAPDAAAAAAIVERFVGCGMDLSRDRRRLDAYFSK 425          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A2P6VSA5_9CHLO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VSA5_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 1.970e-13
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  193 QGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQ 408
            QG+V +  V YSEHSSFP+L+D V  LRP+ ++PTVNA+  A    I+  F  LMDL  D+ RLD +  RPQ
Sbjct:  749 QGSVTVLGVPYSEHSSFPELQDCVRTLRPKRLIPTVNADTPAKSRAIVDRFAPLMDLSQDKSRLDHFLLRPQ 820          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI)

HSP 1 Score: 75.9 bits (185), Expect = 2.690e-13
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  193 QGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPA 414
            QG   +Y V YSEHSSF  LR  + ALRPR I+PTVNA+       ++  F DLMDL  +R R+D++F RP+PA
Sbjct:  285 QGLATVYGVPYSEHSSFDDLRACIAALRPRKIIPTVNADTKLKAANLVARFADLMDLSANRYRIDAFF-RPRPA 357          
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A7R9T7F0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T7F0_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 3.410e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  184 PWVQ--GTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILG-HFLDLMDLRHDRRRLDSYF 396
            PW++  G  R YA+ YSEHSS+ +LR+F+  L+P+ I PTVNA      E+++  HFLDL+DL+ D  RLD YF
Sbjct:  330 PWIENEGRTRTYAIPYSEHSSYTELREFIKFLKPKKITPTVNAITPKDREKLVNKHFLDLVDLKQDVNRLDYYF 403          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUD2_ECTSI2.370e-2456.04DRMBL domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2WPP5_9STRA2.550e-1660.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
R1EKJ3_EMIHU4.880e-1553.95Lactamase_B domain-containing protein (Fragment) n... [more]
A0A2P6TNP6_CHLSO6.390e-1548.08DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlo... [more]
A0A8J9WR85_9CHLO6.420e-1553.33Probable DNA cross-link repair 1A protein at N-ter... [more]
Q00YR2_OSTTA3.950e-1449.33DNA repair metallo-beta-lactamase n=2 Tax=Ostreoco... [more]
A0A2V0PNQ8_9CHLO5.380e-1453.93DNA cross-link repair protein n=1 Tax=Raphidocelis... [more]
A0A2P6VSA5_9CHLO1.970e-1351.39DNA cross-link repair SNM1 isoform X1 n=1 Tax=Micr... [more]
A0A1Y1HYN4_KLENI2.690e-1351.35Putative DNA repair metallo-beta-lactamase family ... [more]
A0A7R9T7F0_9CHLO3.410e-1350.00Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2909758..2910691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D8LUD2
KEGG koko:K15340
EggNOG free text desc.protection from non-homologous end joining at telomere
EggNOG OGsCOG1236@1,KOG1361@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-14_004530.1
Exons2
Model size421
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.6347136-CDS-S-ischiensis_contig10:2909757..29100381622815536.6347136-CDS-S-ischiensis_contig10:2909757..2910038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2909758..2910038 +
1695739755.5101767-CDS-S-ischiensis_contig10:2909757..29100381695739755.5101767-CDS-S-ischiensis_contig10:2909757..2910038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2909758..2910038 +
1622815536.649322-CDS-S-ischiensis_contig10:2910552..29106911622815536.649322-CDS-S-ischiensis_contig10:2910552..2910691Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2910553..2910691 +
1695739755.522224-CDS-S-ischiensis_contig10:2910552..29106911695739755.522224-CDS-S-ischiensis_contig10:2910552..2910691Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2910553..2910691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1586.1prot_S-ischiensis_contig10.1586.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2909758..2910691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1586.1

>prot_S-ischiensis_contig10.1586.1 ID=prot_S-ischiensis_contig10.1586.1|Name=mRNA_S-ischiensis_contig10.1586.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
GQVASQGNGAGPGGEAREGSGPGSGCEEAPSLTPSGRRADAVGARLGKPP
AAAEPTGPWRKPWVQGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTV
NANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPAPA
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mRNA from alignment at S-ischiensis_contig10:2909758..2910691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1586.1 ID=mRNA_S-ischiensis_contig10.1586.1|Name=mRNA_S-ischiensis_contig10.1586.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=934bp|location=Sequence derived from alignment at S-ischiensis_contig10:2909758..2910691+ (Schizocladia ischiensis KU_0333)
GGGCAGGTTGCATCGCAGGGCAACGGCGCGGGGCCGGGCGGGGAGGCAAG GGAGGGCTCAGGGCCGGGAAGCGGATGCGAGGAGGCGCCGTCGTTAACGC CTTCCGGGCGGCGAGCGGACGCCGTGGGGGCACGTCTGGGCAAGCCACCG GCCGCGGCCGAGCCCACGGGGCCGTGGCGCAAGCCGTGGGTGCAGGGCAC GGTGAGGATGTACGCGGTGGCCTACTCGGAACACAGCTCCTTCCCGCAGC TGCGCGACTTTGTGGGCGCCCTGCGGCCCAGGCACGTGGCTTTTGGAGGC TGTTGTGAAGTTTGGCGGTGCCCGCCCCCCCGGTGGCGGGGCTCCCGTCG GGGTGCCGGCCCGTGACCGTGTGTGACCCCGAGTACGACCGGCAGGGCGG TTCCCCCCCCCCTTCACTGCTGACTGGTTACTCCCGCCCCGGTTTTATTG TCGAGCTCTGATAAGTAGTAGGGTCCTGTAGTGGAGAATTGACTCCCTGT GTACGCTAGAGCTAGAGCTCTGCAGGAGAGCACAATGGGGGGCGCTGTAG AGTCCGGCTTGTTGCGGGGGGCGGTCGCCTGTTCCACACCGCACCACGCG TAAGTACGCTCTCGCTCATCAGACGCGGCTGAGCGTTTGGCGCGGCCCCT TTTTGCTGCTGGGCGCCGGCTTTTGCGCGCCCACTTGTTGACCCTTCCCC TACCCTTCCCCTCCTCTGCAATCCGCCGCCGCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGCCGCTCCCCACCCTCTGGACTCCTTCCCGCTCAGGTCCA TCGTCCCGACGGTGAACGCCAATGACGGGGCAGCCGTGGAGCGCATTCTC GGGCACTTCCTCGACCTCATGGACCTGCGCCACGACCGCCGCCGCCTGGA CTCCTACTTTTCCCGCCCGCAGCCCGCCCCCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2909758..2910691+

>mRNA_S-ischiensis_contig10.1586.1 ID=mRNA_S-ischiensis_contig10.1586.1|Name=mRNA_S-ischiensis_contig10.1586.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig10:2909758..2910691+ (Schizocladia ischiensis KU_0333)
GGGCAGGTTGCATCGCAGGGCAACGGCGCGGGGCCGGGCGGGGAGGCAAG
GGAGGGCTCAGGGCCGGGAAGCGGATGCGAGGAGGCGCCGTCGTTAACGC
CTTCCGGGCGGCGAGCGGACGCCGTGGGGGCACGTCTGGGCAAGCCACCG
GCCGCGGCCGAGCCCACGGGGCCGTGGCGCAAGCCGTGGGTGCAGGGCAC
GGTGAGGATGTACGCGGTGGCCTACTCGGAACACAGCTCCTTCCCGCAGC
TGCGCGACTTTGTGGGCGCCCTGCGGCCCAGGGGCAGGTTGCATCGCAGG
GCAACGGCGCGGGGCCGGGCGGGGAGGCAAGGGAGGGCTCAGGGCCGGGA
AGCGGATGCGAGGAGGCGCCGTCGTTAACGCCTTCCGGGCGGCGAGCGGA
CGCCGTGGGGGCACGTCTGGGCAAGCCACCGGCCGCGGCCGAGCCCACGG
GGCCGTGGCGCAAGCCGTGGGTGCAGGGCACGGTGAGGATGTACGCGGTG
GCCTACTCGGAACACAGCTCCTTCCCGCAGCTGCGCGACTTTGTGGGCGC
CCTGCGGCCCAGGTCCATCGTCCCGACGGTGAACGCCAATGACGGGGCAG
CCGTGGAGCGCATTCTCGGGCACTTCCTCGACCTCATGGACCTGCGCCAC
GACCGCCGCCGCCTGGACTCCTACTTTTCCCGCCCGCAGCCCGCCCCCGC
CGTCCATCGTCCCGACGGTGAACGCCAATGACGGGGCAGCCGTGGAGCGC
ATTCTCGGGCACTTCCTCGACCTCATGGACCTGCGCCACGACCGCCGCCG
CCTGGACTCCTACTTTTCCCGCCCGCAGCCCGCCCCCGCC
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