mRNA_S-ischiensis_contig10.1586.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI) HSP 1 Score: 107 bits (267), Expect = 2.370e-24 Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 154 AAEPTGPW--RKPWVQGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPAPA 420
A GPW +KPWV G R+Y++ YSEHSSF QL+DFV +RP+ IVPTVNA A+VE++L HFL+ MDL DR+RL+SYF + P A
Sbjct: 357 AGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPKKIVPTVNAVSSASVEKMLSHFLEFMDLSSDRKRLESYFCKRDPPSA 447
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A7S2WPP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPP5_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.550e-16 Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 205 RMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSY 393
R+Y V YSEHSSFPQL FVG +RP I PTVNA D A +R++ HFL L+DLR D RR++ Y
Sbjct: 76 RLYMVPYSEHSSFPQLLQFVGRVRPLRITPTVNATDAAERDRLVRHFLHLLDLRADPRRMEYY 138
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: R1EKJ3_EMIHU (Lactamase_B domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EKJ3_EMIHU) HSP 1 Score: 79.3 bits (194), Expect = 4.880e-15 Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 181 KPWVQG--TVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSR 402
KPWV+G T RMY V YSEHSS+ +L+ FV ALRPR++VPTVNA+ ER+ + MDL D+ RLD +F R
Sbjct: 184 KPWVEGAGTTRMYGVPYSEHSSWEELQAFVAALRPRALVPTVNADTARDRERLQAAYAHAMDLAADKGRLDWHFRR 259
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A2P6TNP6_CHLSO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNP6_CHLSO) HSP 1 Score: 80.5 bits (197), Expect = 6.390e-15 Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 115 ADAVGARLGKPPAAAEPTG-PWRKPWVQ-----GTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQ 408
AD + K A +PTG WR+ G+V++ V YSEHSSFP+LRD V ALRPR I+PTVNA D A+ + F DLMDL DR RL Y R Q
Sbjct: 682 ADRIEGTAWKRAVALKPTGWTWRQKGGLDVRDLGSVQLVGVPYSEHSSFPELRDCVRALRPRRIIPTVNAGDPASSRAQVDRFADLMDLSADRSRLSYYLLRSQ 785
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO) HSP 1 Score: 80.5 bits (197), Expect = 6.420e-15 Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 193 QGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPAP 417
+G V +Y + YSEHSSF +LRD V LRPR IVPTVNA+ AA ++ F DLMDL DR RLD + + + AP
Sbjct: 288 EGDVAIYGIPYSEHSSFAELRDCVKTLRPRRIVPTVNASTPAAARSLVDRFADLMDLSKDRSRLDFFLRKAKTAP 362
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: Q00YR2_OSTTA (DNA repair metallo-beta-lactamase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q00YR2_OSTTA) HSP 1 Score: 78.2 bits (191), Expect = 3.950e-14 Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 181 KPWVQ--GTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILG-HFLDLMDLRHDRRRLDSYF 396
+PW++ G R YAV YSEHSS+ +LR+F+ L+P+ I PTVNA+ E+++ HFLDL+DL++D +R+D YF
Sbjct: 327 EPWIENEGRTRTYAVPYSEHSSYTELREFIKFLKPKRITPTVNASTENEREKLVNKHFLDLVDLKYDVKRIDFYF 401
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A2V0PNQ8_9CHLO (DNA cross-link repair protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PNQ8_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 5.380e-14 Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 163 PTGPW---RKP-----WVQGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDL-MDLRHDRRRLDSYFSR 402
PTG W RKP W G +Y+ YSEHSSF L+ V ALRPR IVPTVNA D AA I+ F+ MDL DRRRLD+YFS+
Sbjct: 338 PTG-WAYRRKPGPLPCWRLGAAALYSAPYSEHSSFSDLQACVRALRPRRIVPTVNAPDAAAAAAIVERFVGCGMDLSRDRRRLDAYFSK 425
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A2P6VSA5_9CHLO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VSA5_9CHLO) HSP 1 Score: 76.3 bits (186), Expect = 1.970e-13 Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 193 QGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQ 408
QG+V + V YSEHSSFP+L+D V LRP+ ++PTVNA+ A I+ F LMDL D+ RLD + RPQ
Sbjct: 749 QGSVTVLGVPYSEHSSFPELQDCVRTLRPKRLIPTVNADTPAKSRAIVDRFAPLMDLSQDKSRLDHFLLRPQ 820
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI) HSP 1 Score: 75.9 bits (185), Expect = 2.690e-13 Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 193 QGTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILGHFLDLMDLRHDRRRLDSYFSRPQPA 414
QG +Y V YSEHSSF LR + ALRPR I+PTVNA+ ++ F DLMDL +R R+D++F RP+PA
Sbjct: 285 QGLATVYGVPYSEHSSFDDLRACIAALRPRKIIPTVNADTKLKAANLVARFADLMDLSANRYRIDAFF-RPRPA 357
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Match: A0A7R9T7F0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T7F0_9CHLO) HSP 1 Score: 75.5 bits (184), Expect = 3.410e-13 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 184 PWVQ--GTVRMYAVAYSEHSSFPQLRDFVGALRPRSIVPTVNANDGAAVERILG-HFLDLMDLRHDRRRLDSYF 396
PW++ G R YA+ YSEHSS+ +LR+F+ L+P+ I PTVNA E+++ HFLDL+DL+ D RLD YF
Sbjct: 330 PWIENEGRTRTYAIPYSEHSSYTELREFIKFLKPKKITPTVNAITPKDREKLVNKHFLDLVDLKQDVNRLDYYF 403 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig10.1586.1 >prot_S-ischiensis_contig10.1586.1 ID=prot_S-ischiensis_contig10.1586.1|Name=mRNA_S-ischiensis_contig10.1586.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp GQVASQGNGAGPGGEAREGSGPGSGCEEAPSLTPSGRRADAVGARLGKPPback to top mRNA from alignment at S-ischiensis_contig10:2909758..2910691+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig10.1586.1 ID=mRNA_S-ischiensis_contig10.1586.1|Name=mRNA_S-ischiensis_contig10.1586.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=934bp|location=Sequence derived from alignment at S-ischiensis_contig10:2909758..2910691+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig10:2909758..2910691+ >mRNA_S-ischiensis_contig10.1586.1 ID=mRNA_S-ischiensis_contig10.1586.1|Name=mRNA_S-ischiensis_contig10.1586.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig10:2909758..2910691+ (Schizocladia ischiensis KU_0333)back to top |