mRNA_S-ischiensis_contig10.1581.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1581.1
Unique NamemRNA_S-ischiensis_contig10.1581.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2810265..2810640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.4989667-CDS-S-ischiensis_contig10:2810264..28106391622815505.4989667-CDS-S-ischiensis_contig10:2810264..2810639Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2810265..2810639 +
1695739738.3175547-CDS-S-ischiensis_contig10:2810264..28106391695739738.3175547-CDS-S-ischiensis_contig10:2810264..2810639Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2810265..2810639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1581.1prot_S-ischiensis_contig10.1581.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2810265..2810639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1581.1

>prot_S-ischiensis_contig10.1581.1 ID=prot_S-ischiensis_contig10.1581.1|Name=mRNA_S-ischiensis_contig10.1581.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
GGAGTFAAGCLSGRVGAGGRSRRRRRRTGAWGVSLLQHTPTRKVFSRLYL
YYTSTEVTVQSVLYVAARKKPTSQEDTDCGGIGRRVGSPGGARVCSARAY
LTAGRPFFFARAVVRELRPCRRALR
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mRNA from alignment at S-ischiensis_contig10:2810265..2810640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1581.1 ID=mRNA_S-ischiensis_contig10.1581.1|Name=mRNA_S-ischiensis_contig10.1581.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=376bp|location=Sequence derived from alignment at S-ischiensis_contig10:2810265..2810640+ (Schizocladia ischiensis KU_0333)
GGGGGAGCAGGGACGTTCGCGGCGGGGTGTCTGTCTGGCAGGGTGGGGGC
AGGAGGAAGGAGTAGGAGGAGGAGGAGGAGGACGGGCGCATGGGGTGTGA
GCTTGCTGCAACACACACCCACACGCAAGGTCTTCTCTCGCTTGTATCTC
TATTATACTTCTACCGAAGTTACGGTACAATCAGTCTTGTACGTTGCAGC
GCGCAAGAAGCCCACGTCACAGGAGGACACGGATTGTGGCGGCATCGGCA
GGCGTGTGGGGAGCCCGGGCGGGGCCCGTGTTTGTTCCGCGCGGGCGTAT
CTGACTGCAGGCAGGCCATTTTTTTTTGCTCGGGCAGTCGTTCGTGAGCT
GCGTCCTTGTCGCCGAGCGCTTCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2810265..2810640+

>mRNA_S-ischiensis_contig10.1581.1 ID=mRNA_S-ischiensis_contig10.1581.1|Name=mRNA_S-ischiensis_contig10.1581.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig10:2810265..2810640+ (Schizocladia ischiensis KU_0333)
GGGGGAGCAGGGACGTTCGCGGCGGGGTGTCTGTCTGGCAGGGTGGGGGC
AGGAGGAAGGAGTAGGAGGAGGAGGAGGAGGACGGGCGCATGGGGTGTGA
GCTTGCTGCAACACACACCCACACGCAAGGTCTTCTCTCGCTTGTATCTC
TATTATACTTCTACCGAAGTTACGGTACAATCAGTCTTGTACGTTGCAGC
GCGCAAGAAGCCCACGTCACAGGAGGACACGGATTGTGGCGGCATCGGCA
GGCGTGTGGGGAGCCCGGGCGGGGCCCGTGTTTGTTCCGCGCGGGCGTAT
CTGACTGCAGGCAGGCCATTTTTTTTTGCTCGGGCAGTCGTTCGTGAGCT
GCGTCCTTGTCGCCGAGCGCTTCGCGGGGGAGCAGGGACGTTCGCGGCGG
GGTGTCTGTCTGGCAGGGTGGGGGCAGGAGGAAGGAGTAGGAGGAGGAGG
AGGAGGACGGGCGCATGGGGTGTGAGCTTGCTGCAACACACACCCACACG
CAAGGTCTTCTCTCGCTTGTATCTCTATTATACTTCTACCGAAGTTACGG
TACAATCAGTCTTGTACGTTGCAGCGCGCAAGAAGCCCACGTCACAGGAG
GACACGGATTGTGGCGGCATCGGCAGGCGTGTGGGGAGCCCGGGCGGGGC
CCGTGTTTGTTCCGCGCGGGCGTATCTGACTGCAGGCAGGCCATTTTTTT
TTGCTCGGGCAGTCGTTCGTGAGCTGCGTCCTTGTCGCCGAGCGCTTCGC
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