mRNA_S-ischiensis_contig10.1385.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1385.1
Unique NamemRNA_S-ischiensis_contig10.1385.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1385.1 vs. uniprot
Match: A0A6H5JHV6_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.550e-16
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  151 LLRLHIISARGLPRSVGAVGL------PDASVVVKFNGAKVGETQVEHGTRRPVWNEAFVIRSYL 327
            LLR+H++SARGLPRS GAVGL      PD  VVVKFNG KVG T+ + GTRRP WN+ F+IRS L
Sbjct:   25 LLRIHVVSARGLPRSAGAVGLARARGMPDPYVVVKFNGEKVGCTKADRGTRRPEWNQNFLIRSDL 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHV6_9PHAE2.550e-1664.62C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:1371591..1372175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.7729874-CDS-S-ischiensis_contig10:1371590..13718421622815495.7729874-CDS-S-ischiensis_contig10:1371590..1371842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1371591..1371842 +
1695739734.6010911-CDS-S-ischiensis_contig10:1371590..13718421695739734.6010911-CDS-S-ischiensis_contig10:1371590..1371842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1371591..1371842 +
1622815495.7864664-CDS-S-ischiensis_contig10:1371960..13721731622815495.7864664-CDS-S-ischiensis_contig10:1371960..1372173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1371961..1372173 +
1695739734.6090665-CDS-S-ischiensis_contig10:1371960..13721731695739734.6090665-CDS-S-ischiensis_contig10:1371960..1372173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 1371961..1372173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1385.1prot_S-ischiensis_contig10.1385.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 1371591..1372173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1385.1

>prot_S-ischiensis_contig10.1385.1 ID=prot_S-ischiensis_contig10.1385.1|Name=mRNA_S-ischiensis_contig10.1385.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
ELCTAVARRQVVVQDGLPRSCGLTLMDENMSTPRAAAPAADRNGKTPQAN
LLRLHIISARGLPRSVGAVGLPDASVVVKFNGAKVGETQVEHGTRRPVWN
EAFVIRSYLGDDGPRDGGCDSAKSSPGPGSPADYHRNHRSLSEGGVHRQY
AGGFV
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mRNA from alignment at S-ischiensis_contig10:1371591..1372175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1385.1 ID=mRNA_S-ischiensis_contig10.1385.1|Name=mRNA_S-ischiensis_contig10.1385.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=585bp|location=Sequence derived from alignment at S-ischiensis_contig10:1371591..1372175+ (Schizocladia ischiensis KU_0333)
GAACTTTGCACAGCTGTTGCCAGGAGACAAGTTGTGGTGCAAGATGGTCT
ACCGAGGTCGTGTGGCTTAACCTTAATGGACGAAAACATGTCCACCCCGA
GGGCCGCTGCGCCTGCGGCGGACCGCAACGGCAAGACGCCCCAGGCAAAT
TTGCTCCGTTTACACATCATCTCGGCCAGGGGACTGCCTCGCTCCGTGGG
CGCCGTCGGCCTGCCGGACGCCTCCGTTGTCGTCAAGTTCAACGGTGCCA
AGGTTAGTGGACTTCCGCCTTCCAACTGGCCTGAAATTCGTCCCCTCTCC
CATCCAGCAAATACCCAACCGTCGAGACTCCGGTCACGTTTGCCGGCGCC
TGTGCCGCGCGGGCGCACAGGTGGGCGAGACGCAAGTGGAGCACGGCACC
CGCCGGCCCGTCTGGAACGAGGCCTTCGTCATCCGCTCATACCTCGGCGA
CGATGGCCCGAGGGACGGCGGCTGCGACAGCGCCAAGTCGTCGCCCGGTC
CGGGGTCGCCGGCGGACTACCACCGCAACCACCGCAGCCTATCGGAGGGG
GGAGTTCACAGGCAATATGCGGGTGGGTTTGTCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:1371591..1372175+

>mRNA_S-ischiensis_contig10.1385.1 ID=mRNA_S-ischiensis_contig10.1385.1|Name=mRNA_S-ischiensis_contig10.1385.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig10:1371591..1372175+ (Schizocladia ischiensis KU_0333)
GAACTTTGCACAGCTGTTGCCAGGAGACAAGTTGTGGTGCAAGATGGTCT
ACCGAGGTCGTGTGGCTTAACCTTAATGGACGAAAACATGTCCACCCCGA
GGGCCGCTGCGCCTGCGGCGGACCGCAACGGCAAGACGCCCCAGGCAAAT
TTGCTCCGTTTACACATCATCTCGGCCAGGGGACTGCCTCGCTCCGTGGG
CGCCGTCGGCCTGCCGGACGCCTCCGTTGTCGTCAAGTTCAACGGTGCCA
AGGAACTTTGCACAGCTGTTGCCAGGAGACAAGTTGTGGTGCAAGATGGT
CTACCGAGGTCGTGTGGCTTAACCTTAATGGACGAAAACATGTCCACCCC
GAGGGCCGCTGCGCCTGCGGCGGACCGCAACGGCAAGACGCCCCAGGCAA
ATTTGCTCCGTTTACACATCATCTCGGCCAGGGGACTGCCTCGCTCCGTG
GGCGCCGTCGGCCTGCCGGACGCCTCCGTTGTCGTCAAGTTCAACGGTGC
CAAGGTGGGCGAGACGCAAGTGGAGCACGGCACCCGCCGGCCCGTCTGGA
ACGAGGCCTTCGTCATCCGCTCATACCTCGGCGACGATGGCCCGAGGGAC
GGCGGCTGCGACAGCGCCAAGTCGTCGCCCGGTCCGGGGTCGCCGGCGGA
CTACCACCGCAACCACCGCAGCCTATCGGAGGGGGGAGTTCACAGGCAAT
ATGCGGGTGGGTTTGTCGTGGGCGAGACGCAAGTGGAGCACGGCACCCGC
CGGCCCGTCTGGAACGAGGCCTTCGTCATCCGCTCATACCTCGGCGACGA
TGGCCCGAGGGACGGCGGCTGCGACAGCGCCAAGTCGTCGCCCGGTCCGG
GGTCGCCGGCGGACTACCACCGCAACCACCGCAGCCTATCGGAGGGGGGA
GTTCACAGGCAATATGCGGGTGGGTTTGTC
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