mRNA_S-ischiensis_contig10.1265.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1265.1
Unique NamemRNA_S-ischiensis_contig10.1265.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: D7G5Q8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q8_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 3.730e-109
Identity = 178/257 (69.26%), Postives = 201/257 (78.21%), Query Frame = 1 
Query:  382 TSRPPQCASCNAPAWPIRSKALPFLPQPQALDGSMIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGG-----EYRAGDLGLDPLGMADDEMRLKELKHGRLAMAAFAYHYATVLLTKKGITFAHQLLGDVCVYNLRLGLGSVTAA-CYDRPEAPLDTTLSWEIMWRVLTGFFKEPYF 1134
            +SR P     +AP    RS ALPFLP+P+ALDG+MIGDVGFDPLG A  DNLDR R+AE+KHGRLAMVALAGWPVA L L +LTK IPP+TVCTGNGCAID   S  ALPLEAIG VS VYW SALALAVAAEL  +  +RK+   G     EYRAGDLGLDP  +ADDEMRL+E+KHGRLAMAAFA+HYA VLL KKG+   HQL G VCVYNL+ G+ S+    CY RPEA LDTTLSWEIM+RVL+GFFKEPY+
Sbjct:    3 SSRLPVIPDTDAP----RSVALPFLPRPEALDGTMIGDVGFDPLGFAAEDNLDRYREAELKHGRLAMVALAGWPVATLFLGLLTKLIPPATVCTGNGCAIDQTWSGSALPLEAIGNVSFVYWGSALALAVAAELVAI--RRKQSSVGRVGPDEYRAGDLGLDPFNLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGMSSLPPPICYPRPEAALDTTLSWEIMYRVLSGFFKEPYY 253
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: A0A835ZHI1_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI1_9STRA)

HSP 1 Score: 308 bits (789), Expect = 4.360e-97
Identity = 151/234 (64.53%), Postives = 178/234 (76.07%), Query Frame = 1 
Query:  433 RSKALPFLPQPQALDGSMIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGMADDEMRLKELKHGRLAMAAFAYHYATVLLTKKGITFAHQLLGDVCVYNLRLGLGSVTAACYDRPEAPLDTTLSWEIMWRVLTGFFKEPYF 1134
            +S+ALPFL  P      M GD GFDPLG AT DN+DRMR+ E+KHGRLAMVAL GWPVAEL L +L +A+PP+TVCTG+GC +D++LS  ALPL+AIGR   VYWASALALA+ AE+A L  KR++  G +   GDLG+DP  +A D+MRLKELKHGRLAMAAFA HYA VL   KG+ FAHQ+   VCVYN R  LG     CY RPEA LDT LSWEIM+RVLTG+FKEPY+
Sbjct:   11 KSRALPFLQAPFFAGSDMTGDAGFDPLGFATEDNIDRMRECELKHGRLAMVALGGWPVAELVLGLLQRAVPPATVCTGSGCTVDSSLSAYALPLQAIGRFGAVYWASALALAIVAEVAAL--KRRQEWGPDLPLGDLGVDPFKLASDDMRLKELKHGRLAMAAFAVHYAGVLAKNKGVVFAHQMWSQVCVYNFRADLGFPAPICYPRPEAALDTVLSWEIMFRVLTGYFKEPYY 242
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: A0A7S0L6L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L6L5_9EUKA)

HSP 1 Score: 208 bits (529), Expect = 1.400e-58
Identity = 123/270 (45.56%), Postives = 159/270 (58.89%), Query Frame = 1 
Query:  403 ASCNA--PAWPIRSKALPFLPQPQALDGSMIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTR--ALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGM---AD----DEMRLKELKHGRLAMAAFAYHYATVL--------------LTKKGITFAHQLLGDVCVYNLRLGLGSVTAACYDR-PEAPLDTTLSWEIMWRVLTGFFKEPYF 1134
            A+C A  P  P +S ALPF+P P +LDGS++GD GFDPLGLAT ++L R+R AE++H RLAMVA  GWP+AE G W+  K +P  +VCTG GC +D+    R  AL L  IG +S+ YW   LA A+A EL     + + L G    +G    DPL +   AD    + + L E+KHGRLAM A A H+AT L              + K  +TFAHQL    CVY+L       T  CY +      D  LSWEIM+RV+TG+F+EPYF
Sbjct:    8 AACGALLPNAPRQSLALPFIPAPLSLDGSLVGDAGFDPLGLATVESLPRLRAAELRHARLAMVATWGWPIAESGFWIAQKLVPVKSVCTGGGCYVDSTEGARQAALQLADIGVISVGYWGLLLAAAIAGEL-----RARSLEG----SGQPAFDPLSLWTAADAPEQERLELAEIKHGRLAMVAIAAHWATKLGAACGSAAAAAAAGVPKGTLTFAHQLWSQTCVYSLT----KQTTICYPQFTNDQFDFILSWEIMFRVVTGYFREPYF 264
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: A0A0M0K4A5_9EUKA (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4A5_9EUKA)

HSP 1 Score: 197 bits (501), Expect = 6.690e-55
Identity = 122/244 (50.00%), Postives = 149/244 (61.07%), Query Frame = 1 
Query:  433 RSKALPFLPQPQALDGSMIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTR--ALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGM---ADD----EMRLKELKHGRLAMAAFAYHYATVLLTKKGITFAHQLLGDVCVYNLRLGLGSVTAACYDR-PEAPLDTTLSWEIMWRVLTGFFKEPYF 1134
            RS ++PFLP+P ALDG+MIGDVGFDPLG+AT+ NL RMR+AE++HGRLAMVA  GWP+AE G  +  K +P STVCTG GC +D     R  AL L  IG+VSI YW S LALAV  EL               R G    DPL +   ADD     ++L ELKHGRLAM A A +++T LL            G+ CVY+L     S  A CY +      D  LSWEI++R LTG+F+EPYF
Sbjct:   22 RSISVPFLPRPAALDGTMIGDVGFDPLGIATTANLARMREAELRHGRLAMVATWGWPIAEGGFALAQKLVPVSTVCTGVGCYVDKTDEGRQAALQLADIGQVSIAYWGSLLALAVHGEL-------------RARQGCY-FDPLRLYVDADDTERVRLQLAELKHGRLAMCAVATYWSTKLLW-----------GETCVYSLTRQ--SAQALCYPQYTNEAFDYVLSWEILFRTLTGYFREPYF 238
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: R1D3G8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3G8_EMIHU)

HSP 1 Score: 192 bits (487), Expect = 3.530e-53
Identity = 115/243 (47.33%), Postives = 144/243 (59.26%), Query Frame = 1 
Query:  415 APAWPIRSKALPFLPQPQALDGSMIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTR--ALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGMADDEMRLKELKHGRLAMAAFAYHYATVLLTKKGITFAHQLLGDVCVYNLRLGLGSVTAACYDR-PEAPLDTTLSWEIMWRVLTGFFKEPYF 1134
            +P+ P RS A+P L  P      MIGD+GFDPLGLAT+DNL RMR+AEV+HGRLAMVA  GWPVAE+G  V  + +P S+VC+G+GC +D   + R  AL L  IG +S  YW + LA A                    R G    DPL +    + L ELKHGRLAMAA A H+AT L   +G   A    G+ CVY+    L SV   C  +   AP D  LS+EI++RVLTG+F+EPYF
Sbjct:    5 SPSTP-RSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGALLAAAA-------------------RRG-CAFDPLRL---RLELAELKHGRLAMAAVALHWATKLAGARGSAAAALAAGETCVYSAAESLRSVQGVCMPQWTAAPFDAVLSYEILFRVLTGYFREPYF 217
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: R1CT78_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CT78_EMIHU)

HSP 1 Score: 126 bits (317), Expect = 1.910e-30
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  415 APAWPIRSKALPFLPQPQALDGSMIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTR--ALPLEAIGRVSIVYWASALALAVAAEL 783
            +P+ P RS A+P L  P      MIGD+GFDPLGLAT+DNL RMR+AEV+HGRLAMVA  GWPVAE+G  V  + +P S+VC+G+GC +D   + R  AL L  IG +S  YW + LA AV  EL
Sbjct:   16 SPSTP-RSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGTLLAAAVTGEL 133
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: B7G4U8_PHATC (Protein fucoxanthin chlorophyll a/c protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4U8_PHATC)

HSP 1 Score: 122 bits (306), Expect = 1.600e-27
Identity = 78/190 (41.05%), Postives = 112/190 (58.95%), Query Frame = 1 
Query:  418 PAWPIRSKALPFLPQPQALDGSMIGDVGFDPLGLA-TSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGM------ADDEMRLKELKHGRLAMAAFAYHYATVLLTKKGI 966
            PA P  S++LPF+ +P ALDG+++GDVGFDPLG A T  +L   R+AEVKH RLAM+A AGWP++EL    +   +       G    +DA     +L    +G+VS VYW + L  A A ++  +   RK     +Y  G+LG+DP G+      A ++M+LKELK+GRLAM A +       ++K G+
Sbjct:   54 PALPKMSQSLPFMERPAALDGTLVGDVGFDPLGFAKTKADLINYREAEVKHARLAMLAAAGWPLSELFDAKIANWM-------GMTPLLDANDRAPSLLNGGLGKVSPVYWVACLVAAAAIDVYGISKARKNEP--DYFPGNLGIDPFGLFPKDAAAQEDMKLKELKNGRLAMIAISAFAFQEFVSKFGV 234
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: A0A6V0X616_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V0X616_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.920e-27
Identity = 72/173 (41.62%), Postives = 104/173 (60.12%), Query Frame = 1 
Query:  427 PIRSKALPFLPQPQALDGSMIGDVGFDPLGLA--TSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGMADD------EMRLKELKHGRLAMAA 921
            P  SKALPF+ +P+ LDG++ GDVGFDP GLA    ++L  MR+AE+KHGRLAM+A+ GWP+AEL    L +A    ++ T +G        + +L    + +V I +W + L+L+   E+  +  K K+     Y+ GD   DPLG+  D      EM+ KE+KHGR+AM A
Sbjct:   40 PEMSKALPFIARPKLLDGTLAGDVGFDPFGLAGENKESLLNMREAEIKHGRLAMLAVVGWPIAELFDRQLAEAAGMPSLLTKSG-------ESPSLLNGGLDKVDIAFWVALLSLSGIIEIENM--KMKDEKAKNYQPGDCNFDPLGLLPDDRIGALEMQTKEIKHGRIAMMA 203
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: A0A1E7FWQ4_9STRA (Chlorophyll a/b-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWQ4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.050e-27
Identity = 73/170 (42.94%), Postives = 98/170 (57.65%), Query Frame = 1 
Query:  436 SKALPFLPQPQALDGSMIGDVGFDPLGLA--TSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGM------ADDEMRLKELKHGRLAMAA 921
            S+ALPF P+P+ LDG+M GDVGFDP G A    ++L  MR+AE+KH RLAM+A+ GWP+AEL    +  +I   T+ T  G        + +L    + +VS+ YW +  ALA   EL     K +E  G +Y  GD   DPL +        +EM  KELKHGRL+M A
Sbjct:    2 SQALPFAPRPKLLDGTMAGDVGFDPFGFAGENKESLTYMREAEIKHSRLAMLAVVGWPIAELFDKPIADSIGLPTLLTNTG-------ESPSLLNGGLDKVSVAYWVAFAALAGIIELES--SKMQEEKGKDYIPGDCNFDPLNLMPTDKKGQNEMMTKELKHGRLSMMA 162
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BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Match: K0TEH8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEH8_THAOC)

HSP 1 Score: 120 bits (300), Expect = 4.400e-27
Identity = 73/187 (39.04%), Postives = 107/187 (57.22%), Query Frame = 1 
Query:  433 RSKALPFLPQPQALDGSMIGDVGFDPLGLATSD--NLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLTKAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAELAMLGGKRKELLGGEYRAGDLGLDPLGMADDE------MRLKELKHGRLAMAAFAYHYATVLLTKKGIT 969
            +S +LPFLP+P+ LDGS+ GDVGFDP G A +D  +L  MR+AE+KHGRLAM+A  GWP+AEL    +  A+   +  T NG       S+ ++    + ++   YW    ++A  AEL+    K ++  G +Y  GD   DPLG+   +      M+ KE+KHGR+AM A   + A   L +  +T
Sbjct:   38 KSMSLPFLPRPKILDGSLAGDVGFDPFGFAGADRESLINMREAEIKHGRLAMLAAVGWPLAELWDRSIASALGLPSALTANG-------SSPSILNGGLDKIEPDYWLIVASIAGLAELSSKDAKEEK--GAKYVPGDCLFDPLGLMPSDKDGALAMQTKEIKHGRIAMMALLGYVAQEALYRSPVT 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Q8_ECTSI3.730e-10969.26Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A835ZHI1_9STRA4.360e-9764.53Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S0L6L5_9EUKA1.400e-5845.56Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A0M0K4A5_9EUKA6.690e-5550.00Protein fucoxanthin chlorophyll a c protein n=1 Ta... [more]
R1D3G8_EMIHU3.530e-5347.33Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1CT78_EMIHU1.910e-3055.20Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
B7G4U8_PHATC1.600e-2741.05Protein fucoxanthin chlorophyll a/c protein n=2 Ta... [more]
A0A6V0X616_9STRA1.920e-2741.62Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A1E7FWQ4_9STRA3.050e-2742.94Chlorophyll a/b-binding protein n=1 Tax=Fragilario... [more]
K0TEH8_THAOC4.400e-2739.04Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:429511..437280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue4.9e-82
Seed eggNOG ortholog2880.D7G5Q8
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2C5UI@1,2S2YV@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-12_008770.1
Exons8
Model size2090
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1265.1prot_S-ischiensis_contig10.1265.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 430038..436327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.3119564-UTR-S-ischiensis_contig10:429510..4297011622815511.3119564-UTR-S-ischiensis_contig10:429510..429701Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 429511..429701 +
1695739741.6509125-UTR-S-ischiensis_contig10:429510..4297011695739741.6509125-UTR-S-ischiensis_contig10:429510..429701Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 429511..429701 +
1622815511.325208-UTR-S-ischiensis_contig10:429745..4300371622815511.325208-UTR-S-ischiensis_contig10:429745..430037Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 429746..430037 +
1695739741.661042-UTR-S-ischiensis_contig10:429745..4300371695739741.661042-UTR-S-ischiensis_contig10:429745..430037Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 429746..430037 +
1622815511.4283106-UTR-S-ischiensis_contig10:436327..4372801622815511.4283106-UTR-S-ischiensis_contig10:436327..437280Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 436328..437280 +
1695739741.7382362-UTR-S-ischiensis_contig10:436327..4372801695739741.7382362-UTR-S-ischiensis_contig10:436327..437280Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 436328..437280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.336571-CDS-S-ischiensis_contig10:430037..4300961622815511.336571-CDS-S-ischiensis_contig10:430037..430096Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 430038..430096 +
1695739741.6689694-CDS-S-ischiensis_contig10:430037..4300961695739741.6689694-CDS-S-ischiensis_contig10:430037..430096Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 430038..430096 +
1622815511.3503838-CDS-S-ischiensis_contig10:430911..4310051622815511.3503838-CDS-S-ischiensis_contig10:430911..431005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 430912..431005 +
1695739741.677208-CDS-S-ischiensis_contig10:430911..4310051695739741.677208-CDS-S-ischiensis_contig10:430911..431005Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 430912..431005 +
1622815511.363631-CDS-S-ischiensis_contig10:431476..4315581622815511.363631-CDS-S-ischiensis_contig10:431476..431558Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 431477..431558 +
1695739741.686298-CDS-S-ischiensis_contig10:431476..4315581695739741.686298-CDS-S-ischiensis_contig10:431476..431558Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 431477..431558 +
1622815511.3761413-CDS-S-ischiensis_contig10:433071..4332291622815511.3761413-CDS-S-ischiensis_contig10:433071..433229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 433072..433229 +
1695739741.695492-CDS-S-ischiensis_contig10:433071..4332291695739741.695492-CDS-S-ischiensis_contig10:433071..433229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 433072..433229 +
1622815511.3890142-CDS-S-ischiensis_contig10:433772..4338651622815511.3890142-CDS-S-ischiensis_contig10:433772..433865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 433773..433865 +
1695739741.708923-CDS-S-ischiensis_contig10:433772..4338651695739741.708923-CDS-S-ischiensis_contig10:433772..433865Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 433773..433865 +
1622815511.4017375-CDS-S-ischiensis_contig10:434208..4342911622815511.4017375-CDS-S-ischiensis_contig10:434208..434291Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 434209..434291 +
1695739741.7226295-CDS-S-ischiensis_contig10:434208..4342911695739741.7226295-CDS-S-ischiensis_contig10:434208..434291Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 434209..434291 +
1622815511.4183753-CDS-S-ischiensis_contig10:436242..4363271622815511.4183753-CDS-S-ischiensis_contig10:436242..436327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 436243..436327 +
1695739741.7305775-CDS-S-ischiensis_contig10:436242..4363271695739741.7305775-CDS-S-ischiensis_contig10:436242..436327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 436243..436327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1265.1

>prot_S-ischiensis_contig10.1265.1 ID=prot_S-ischiensis_contig10.1265.1|Name=mRNA_S-ischiensis_contig10.1265.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=218bp
MIGDVGFDPLGLATSDNLDRMRDAEVKHGRLAMVALAGWPVAELGLWVLT
KAIPPSTVCTGNGCAIDAALSTRALPLEAIGRVSIVYWASALALAVAAEL
AMLGGKRKELLGGEYRAGDLGLDPLGMADDEMRLKELKHGRLAMAAFAYH
YATVLLTKKGITFAHQLLGDVCVYNLRLGLGSVTAACYDRPEAPLDTTLS
WEIMWRVLTGFFKEPYF*
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mRNA from alignment at S-ischiensis_contig10:429511..437280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1265.1 ID=mRNA_S-ischiensis_contig10.1265.1|Name=mRNA_S-ischiensis_contig10.1265.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7770bp|location=Sequence derived from alignment at S-ischiensis_contig10:429511..437280+ (Schizocladia ischiensis KU_0333)
ATGGACCGTGAGCCCCCCGAACGCCCTACGCATGTCATCAGTAGCACCCA
CGGAAGAACGGTGCGTCTGCGGGCGCAAGGTGCTGTTGCACACCTGTAGG
TTTTCTTTCCTCCCGCCGCTCGTCTTGAACGACATGGGAACTCAGGACTG
CGAGCTTTACGCAGGACCGACAAATGTTCCCCACAACTCTCGTGGCTTCG
TGCCCGCGGCGCATGTTGCTGTCCCAAGGGCACAGCACTACCTGGCAAGG
GTGCAATTTGCTGGAGTCATCGGGGCGGGGGGGTTACATTCCCTCTTTTC
TGCTGGAGGGAAGCTATTGCCTCAAACCCTTTTTTAAGAAGTAGATTGCA
CGATCAGGCCTGCTGCCGAATTGACACCTGCCCTAAGTGGACCCCCCCGA
TGGGCCTACAATCTGTACGTCCCGTACGTCCCGCCCGCCGCAATGCGCGT
CTTGTAATGCCCCTGCCTGGCCCATCAGAAGTAAAGCCTTGCCCTTCCTT
CCACAGCCGCAAGCACTTGATGGGAGCATGATTGGAGATGTGGGTTTCGA
CCCCCTTGGCCTGGCCACTAGCGACAACCTGGACCGGTGAGTGACGGCCG
CACACGGTTGCTATGGGGTGCAAGGTGGGCGGGTTCGGGGTTCTCAGAGG
CCATCAGCCCTTTGGGCCAACCCACCGCTATTGGAGCTCAAGCTTGCCCA
GGCGCTACACGGGTTCACGGTGTGACGCTGACATAGCTCTGCTGGGTGTG
TGGAGGGGCGCAAATAGGAGTTGTGTTGAAGCGACGTGGCAAAACTTGGC
AGCACTTACACTCGTACCGCAAGCGGCCGAGACCACTGGTCATACGCTCC
CATCTCCGGGTTCGGGGGCAGCTTTGACCCCCCTGGAAGCAAATGTACTG
TACTGCTGTATGCTTCGTATATACCATGTACTGCTGTACTCGTACCGTAT
ATACTTGGAAATATCCTTGATCTTCCAACACAGCCGGGCGTGCCTAGTTG
GCCGCCCAAAGTTAAACTGCGGGCTTGCCCTCCTGCAGGAGTAGTACTTG
GAGAGAGCCATTGACTCCCAACTAGAGTCTAAACTGTGTATGGTGTACAT
CAGTTCAAACCGTTTGAGGACTATTAACCACAAGTGCACTATTGTATAGT
TAAGCTAAAACTTCGGGTTTGCCCTCCTGCAGGAGTAGCTCGCCCCCACT
CTGTTGACTACGGCACCCCCGCCGCCTCGCCCCCTCCCCGTCATCCGACC
GCCGTTTCACTGGCAACCGCTACCTCGGCCAACGCGGCGTCAAACCTCGC
CACCGGCGCCTGGGTGCCATGTTGGATCCTGTGCTGTCTGGGTGGGGGCG
GACGCCTACAAATGGTGTCGCTGGTGCGGCGTACTGTACACTACGGCACA
GCATGAGGGACGCAGAAGTGAAGCATGGACGCCTGGCCATGGTGGCCTTG
GCGGGGTGGCCGGTGGCGGAGCTGGGGCTGTGGGTGCTGACAAAGGTGGG
GGAGAGGCAGTGGGGTGGGTGGGTAGGGCATGCCGGAGAGGGGGTTGCTC
ATGAGGCTGCTTTTGCCCAAAACCACATGTATGTCCATTGACCGAGCGTC
CCATACCAAACAGCCCCTTTGGGATGGAGCCCTCTATCACTCTCGCTGTT
GGGGAGGCTGGCTACTTGTACCATCACGTCTCTCCTCTTGTTGTCGCAGT
AGACGGGGTCCTCCCGGGGGGGAACAGTTTCGCCGTGTGTAACTGCCAAA
AACCGGATCCTGCGCACCTGTCGACCAAACACTCACCTCGCAGGCCAGAT
CTGTCCGTCCCCGAGGTGGGGGGCTGTGTGGGATCGCGAAGTGCACGAGA
GCTGTTTTGTTATTGGACGAGCCACCGACCTGCTCCAAAGTGTCGAATGA
CTGCCCCCCCAACCCCCCCGCTGCTGCCACCCCCCCCCCCCTTGTATGAA
ACCCTCTGCATGGCAGGCGATCCCACCTTCCACGGTGTGCACGGGCAATG
GCTGTGCCATTGATGCGGCCCTTTCCACCCGTGCACTACCTCTCGAAGGT
TCGTTATCCATTTGACCCCTGCTAAATTGGACTTACACACTAAAACCCTA
TGATTATATGGACCTCAGGGGAAAAAGGGTTAACCTCGCGCTGCGGCCCG
ACTGCCGCCTCCGCCGCACCCCCCAGCACGACTCCAAAAGAGTGCCATTT
CTCACGGAAATGTGGCTGGGCATTGATGATACTTATCGGCAACGCTTGTA
GTTCAAGGCTGTGTGCTTGGAGGTCCCGTAGGAACGTAGCAAGTGAACGG
CTTGCCCTGAAGCAATACAGTAGTCTACTGCGCCTGAACCGCTGCCGTAG
AGCTCTGCAGAGTGCGCCACGTGCTGCAGTGGCAAAACCCTCTGCCTGCA
AGTAGTACCTACGCATGGCTAGAGTACAGTAGGCAGTACGCGAGCAGTAG
ACACCGCCCTGATGAGTTGCACCAGGCAGGGTCCCACTGAGAAAGTGCTG
TACGTGAGGTACTCGTTCTGTACCTACAAGTACTGAGTGAACGCCAGTGA
AAGGAAGGGCTTCCGGGGGTGGGGCCCTGAACTCGCGTAGGTAGGGACAC
CTCTTCTTTCCCAACTCACTTGTTTGTGTTCTTGCAAAGAAAAAGCACTT
GCTGAGTGTGTTACACACAGCAGGAACATGGGCGTAGAGTGTGCACAGGT
GCCGCTCTGGTAGGCTACGTGCCTTTCAATTGGTCAACCAGTTGAGGTGC
GCTACAACATCTCATCGCCCTACCCGTGCCCCCCCCGCCGTTTTGTGGAT
GCCCCCCGCCGTTTTGTGGATGCCCCCCGCTTCTGGTCCCCACAAGCTCG
ACTGTATGGATCAACTATCACTTGTATCGTTAGTGTAACGTACTGAAGTA
CTTCCAGACATTGGCATAGCCCCCCCCGCCACACTGTGCTCGTGGTACCC
ACATGTAGACACCTGAACCGCCTGCACAATAGTTCGGTCGAGGGGCGTTG
GTCAATGGAATCGGGACTACAGCAAGTACGGCACGAGTACATATACTGTA
TGTAGCATATTGTACTTCCGAAGCACTTGCAGTACACTACTGTTGGCATG
CTACTACTACTCGAGTACTATATATATACCCGTATATGTACTCACGTGGT
GCTTGCTGTAGTCCCGAGACCATTGACCCCGCGCCTCGTTCGAGACGGAG
CAGTCGAGTACTACATGTAGTACAGTACTCTCGTAGTATAGCTCCTTTTG
TTTGCGGGGGGGGCTTTGCCCGGCCCCGTTTGTGCCTATCGGACGCGTGT
CCACGGTCGTTCGGCAGCCGCGACACCCACCTCACGCAACCCCCCGCCCC
GCTGCCAGCCCCGGGGGCAACTCCTGGCCAATCTTCAATCCCCTACGGCG
AGTGCTGCACCTACTCGATACGAACAAGAACCTCATGAGCCCCCGGTCCC
GTACTCGTAGGGTCACTCCTGTGGAACGCGTCGTAGGTGGTCGACCAGCT
CCAGCAAGCAAGTCATTGGTACCTCCCCCCCCGCCCCCCCCTGCCGCCCC
GCCTGCCGCAGCGATCGGTCGCGTTTCTATTGTGTACTGGGCCTCGGCGC
TGGCCTTGGCGGTGGCGGCGGAGCTGGCGATGCTGGGCGGGAAAAGGAAA
GAATTGCTGGGAGGGGAGTATCGCGCAGGCGACCTGGGGCTGGACCCCCT
GGGGATGGCCGACGATGAGGTGACTTGCTCGGCAGGTTTGATAGCTGCGA
AGTATAGTGTATCTACAGTATATACCTAGTACAATCGAGTACAGAGTTCT
ATAGGTGCAGAAGTCCTGTTTTGGGGCGATCCTTTTGGCCCGGGGCCTGG
AACTCGCCGCTTATCTACCCCTCAAATAAGTACGACGTACACAAGTAGTA
CAGTATATACTTTGTGTGCTCTCTTCTGTGTCACGCTGTGCTGCGGCAGT
CCCCTGGCCATTGACCCCACGCCACGACCGAGACGGAGCAGTAGTAGCGA
TTAAGGTGGCTTGACCCTTGTGACTGGCTCTTCAATACCAACCGCGCACC
AGCGCACGTGCCTGATTGTGCGCCACGGAATCGTTAGCCGGCCTGCCCGC
CCGTCAGTCCGGTTCATCCTCCGCCCCACCTGTTCAACCTGCTTGCTTGC
ATGCCTGCACCTGCCTGTCTGCCTGTCTGTTTCTCTGCCTGCCCACCCGC
CCACCTACATGCCTACCCTGGCCTGATGTGCGGGGGGGGCTGGGATGGGG
GGGGGGGGGCAGATGCGACTGAAGGAGCTGAAGCATGGCCGGCTCGCGAT
GGCGGCCTTTGCCTACCACTACGCGACGGTCTTGTTGACCAAGAAGGGTA
TCACGGTGAGACAGTATACAACACACTACTGCACAGCACGTAGCAGTACT
ATTACTACTGTACGCGACACTGCTGAAATACGGCAGCACAAGCCGTTTGC
TATGGGACAAAATCTCTGCCGAAAGGCTACCATGCAGCCTGCGGGGGCTG
ATCGGTGGTCCAGCCACAGAGTGCACTGGGCCGATGGCCGGTGGCATGCA
CAGCACACGGGGAACCCTGTCCGACATACCGTAGGTACATACGTCGAATT
ATACTATGGTGCAGTGCCTCTAGCTCACTTCACAGAACATGCAAACCTAG
TCCTGACGATACGGTTGACCCTTCCTTCCTCTCCCCCCGCCCTCCCAGTT
TGCGCACCAGCTGCTGGGAGACGTTTGCGTGTACAACCTGCGTCTGGGCC
TGGGGAGTGTGACCGCGGCCTGCTATGACAGGTGCACGCCTTCCCAGCCC
TAAAAAAACGCGGCCTGCTGCAAGTCAAAGTTACCAGCTGTTCCCGTTGT
TGCACTACATGTATGAATCCCTACTGCCCCCGAGCACAATGTCCTGCATC
TTACAATACGACATATAGAGCTCTATATATATGTATGTACTCTACTCCCG
TTGCGCTTGCCGTCGTCCCGAGACCATTGACCATGCGCCTTGGTCGAGAC
GGAGCAGGACCCCTCCCTCCCTTGGCAGAGCCTACCATGTAGCACGTACA
TCTACCGTACCCGAAGGGACTGTACTTGTACTGCCTGTACCCAATGGCAA
GCCGGGATCGGCGTGCAGCCCACGCCTGGCCGGTGAGAACCCGGCATGCT
CCGTCCCGGCCAAGTAGGGATACGAGGGCAGTGGCCGAAAGGCTATCCCC
CGGGGGCTGGCCGGCGCTCCAGCAACTACTGTAGTATACTCCCGATGTGA
TGTGATGTGTACTCTTATGTGCAGTGGTTCGACATCACATCACATCACAT
CGGCGGTCCAGCAAGTACTATGCTGGGCTGACGGGCGGTGGCATGCACAG
GACGGGGTTTCCCTTGTCCAACCAACATGAGTACGCACACGCACACACAC
ATAGGTATACAGCACACTCAAGTACTGTAGATGGGTGCAGTTGAGAGTGC
TGGGCAGTGCTTCCACCATACTTTGTGTAGGGCATAGATAATACGTACTG
ACAGTACTACTGCAGTGCTTGCGTTTTGCATACCGTGGTCCCGAAAACGT
TGCCCAAAGTCCCCATGTGGCTAGGAGAGTGATTTTCAAAGAACCCAAGT
GGCTAAGAGACGTTTTCCAAATGGTTGGGATGCTAGCTAGGTATGCTTGA
AGTAATTGGAAGTACCAGTATGCTTCCAAGGATATGCACGGTACTCGTGG
TGTGCTTGCCGTAGCCCCGAGACCATTGACCAAGCGCTCGACCAACTGTA
GACGGAGCATGTAGTGTCACTGTGTTTATGTCGTTCGCAGTGCTGCTGCT
GCTGCTGCTGCTAGTAAGTTTCAGCCATTTCACCGGGCTTGCTGGTCTGA
GTTACCATTCGTGGGCCTGGGAACCTCCAGGGGTGGGGGGAAGGAAGGAG
GAGGAGGAGGAGGGTGAGGAGGAAGGGGAGTGTTCCCCCAGGGGTGTGGG
GGGGGGCATGTGGCAGGCGACGATGCGGGGTAGGCGGTGACAGAGTAGGC
AGAATCACCACATCATGTACCGGCGCAAGGTCACGTACCTGCGCAAGGGA
AGTGAGCAAACAGGGAGACCCATGTGGGCATGGGAGCCCTGCACTGCAAG
CACCAAACACCTTGCTGACACCAGGAACACGAGTCCACGCAACGGCACAA
TGGTGTGGCCAACACCAGATGGCCTCGCAGTCGCTAAGCGCAAGTGGTGT
GCAGCAAAGGTGTGGCAAGCGGGGGCCCACGCGCGCAACCGTAGTGGTGG
TATCCAGTATCAAAACCGCTCTCAGACTGGTGCTCTGTCGGAGGACCCGG
CAGTGCTTTCACGGCTGCACCTTTTTCTTGCTGTACATCCTACTGTACGG
TACTGGATGTACTGTACGAGCTCATACTGTACTTGCCCCTGAATGAACCG
GGATGCAATGTGTACGACCAGTGCGGGCAGGCATTCGAGCGATATGAGGC
ACTCTACGCACCGGCATATGCTTCGGCGAATCGCCACGTACTTCCGAATA
CTTTGACTGGCGGCAGGCGTTGCCCCAACTCATTAACTCGGATGCCGAAC
AGCCCACGATGTGACCGAACGTGCACTGCACCACGCCGCTGGCACGATCG
TACTTTGCCAGTGGCTTACACATGTGGCTCCGGGCCGCGCCGGGCCTGTG
CCACCGGCGAGTCGGTGACCATGATGCGCTCAGCCTGCCCACGCCGCCGC
CGCCGCCGCCGCCCGTCCCCGGGTGTCCGCAGGCCGGAGGCACCCCTGGA
CACAACCCTGAGCTGGGAGATCATGTGGCGAGTGCTGACAGGCTTCTTCA
AGGAGCCCTACTTCTGACCTGTGCCTCGGACGGCATGCAGCGCCGCCGGC
GGGCCAGTGGCAGTGCCGGCCCGAGTGCGCCACACACTGACAGGGGTGCC
AAGTCATCGCTGTCACTTGCCCCCATGACAACTTGAATGGTCTCCGTCTT
TATGTAGTAGTAGATCATGAGGGGGGGTAGCTAGGCGGCAACTCGAGTCG
AGCGGAGCCTGGGTGCCGTGGCTTGTGGACGGGCTTCGAGCGAGCTCAGA
TCCGATGGTCCGACTTTGGACCTCAAGGCTCCGAAGGAGCTGCTGCTGCA
TGCCGGCCTTGAAGAGGTCCGACTTTGGACCTCAAGGCTCCGAAGGAGCT
GCTGCTGCATGCCGGCCTTGAAGAGTGGCTTCGGGCGTCGCATGCACACG
GTTACCAGCGAAGCGCCGCACACAGTGACAGACAAGCGGCTATTTGCGTC
GCAGTTTTTATTTGTTTTTTTTTCCAAGTCTGGGAGCTCTTGAAGCACCT
TCAGACTGACGTATGCTGGCTTTGAAGTTTGTGCTTTCCTAGGGATCGCG
GTTGCCGATCGGGCTCCGCTGCAGACTCTGAGCTGGTGGCAGACTGACCC
GGAGCCTGCCTAGACGGAGGACGAGGAGACCCGACCTTTGAGTCGAGCCC
AATGGCACTGTGCTTGCCCACTGTTTACACCCTGAAGGTGAAAGGTCTTC
CCCTGTATGGCGTTCCGCCCACCTCTCTGACTTCGACGAGTTTACGTCAC
TGCAGATGTCCCACGTGCGGTGTGTTCAGCTCAGGCTGCACATGCACCCC
GGGATTATGTACCCCTGAACAATGTCAGGTGGCAACTACTTCGAAGTAGT
AAATAATAAAGTACGTGCCCCCTTGTTAGCGAAATCGTTCATGTTTTTTG
GCACCCATGTTTTTTGGCACCTGTACTTGCAGTAGGTAAAAAATCCCGAC
ACTTCGGGAACTTCAAGTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:429511..437280+

>mRNA_S-ischiensis_contig10.1265.1 ID=mRNA_S-ischiensis_contig10.1265.1|Name=mRNA_S-ischiensis_contig10.1265.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1308bp|location=Sequence derived from alignment at S-ischiensis_contig10:429511..437280+ (Schizocladia ischiensis KU_0333)
ATGATTGGAGATGTGGGTTTCGACCCCCTTGGCCTGGCCACTAGCGACAA
CCTGGACCGATGATTGGAGATGTGGGTTTCGACCCCCTTGGCCTGGCCAC
TAGCGACAACCTGGACCGCATGAGGGACGCAGAAGTGAAGCATGGACGCC
TGGCCATGGTGGCCTTGGCGGGGTGGCCGGTGGCGGAGCTGGGGCTGTGG
GTGCTGACAAAGCATGAGGGACGCAGAAGTGAAGCATGGACGCCTGGCCA
TGGTGGCCTTGGCGGGGTGGCCGGTGGCGGAGCTGGGGCTGTGGGTGCTG
ACAAAGGCGATCCCACCTTCCACGGTGTGCACGGGCAATGGCTGTGCCAT
TGATGCGGCCCTTTCCACCCGTGCACTACCTCTCGAAGGCGATCCCACCT
TCCACGGTGTGCACGGGCAATGGCTGTGCCATTGATGCGGCCCTTTCCAC
CCGTGCACTACCTCTCGAAGCGATCGGTCGCGTTTCTATTGTGTACTGGG
CCTCGGCGCTGGCCTTGGCGGTGGCGGCGGAGCTGGCGATGCTGGGCGGG
AAAAGGAAAGAATTGCTGGGAGGGGAGTATCGCGCAGGCGACCTGGGGCT
GGACCCCCTGGGGATGGCCGACGATGAGCGATCGGTCGCGTTTCTATTGT
GTACTGGGCCTCGGCGCTGGCCTTGGCGGTGGCGGCGGAGCTGGCGATGC
TGGGCGGGAAAAGGAAAGAATTGCTGGGAGGGGAGTATCGCGCAGGCGAC
CTGGGGCTGGACCCCCTGGGGATGGCCGACGATGAGATGCGACTGAAGGA
GCTGAAGCATGGCCGGCTCGCGATGGCGGCCTTTGCCTACCACTACGCGA
CGGTCTTGTTGACCAAGAAGGGTATCACGATGCGACTGAAGGAGCTGAAG
CATGGCCGGCTCGCGATGGCGGCCTTTGCCTACCACTACGCGACGGTCTT
GTTGACCAAGAAGGGTATCACGTTTGCGCACCAGCTGCTGGGAGACGTTT
GCGTGTACAACCTGCGTCTGGGCCTGGGGAGTGTGACCGCGGCCTGCTAT
GACAGTTTGCGCACCAGCTGCTGGGAGACGTTTGCGTGTACAACCTGCGT
CTGGGCCTGGGGAGTGTGACCGCGGCCTGCTATGACAGGCCGGAGGCACC
CCTGGACACAACCCTGAGCTGGGAGATCATGTGGCGAGTGCTGACAGGCT
TCTTCAAGGAGCCCTACTTCTGAGCCGGAGGCACCCCTGGACACAACCCT
GAGCTGGGAGATCATGTGGCGAGTGCTGACAGGCTTCTTCAAGGAGCCCT
ACTTCTGA
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