mRNA_S-ischiensis_contig1.165.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.165.1
Unique NamemRNA_S-ischiensis_contig1.165.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 3.900e-79
Identity = 158/227 (69.60%), Postives = 187/227 (82.38%), Query Frame = 1
Query:   40 MSKDLGYKQTQDVH-RRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAA--QFEDPDIAAMMGFGGFG 711
            MSKDLGYKQ ++V  RRTWDRDYYEA+AKERIE+GDD+ E +  AP  RS+KEEF+ A  GAAGPAGS RA+L+ R+ KVDL S+LGKTQVV++A+ PS QGGW+CE CKC LKDS+NYLDHINGKKHQR LG+SMRVERSTVSQVK+R K HKQ EED+  G   KPSA ++++ R RE  + E XXXXXXXXXXXXXXXXXXXX    +F+DP++AAMMGFGGFG
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFG 227          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.980e-55
Identity = 137/224 (61.16%), Postives = 162/224 (72.32%), Query Frame = 1
Query:   43 SKDLGYKQTQDVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGN-AGKPSALEDYEARTRE-RAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGF 708
            S DLG KQ  +V RR+WD + YE +AKER+E+GD+  EA P +      KEEF+ A  GA GPAGS+RA+L+ R  KVDLESRL KTQV++SAAA S+QGG+WCE CKCLLKDS+ YLDHINGKKHQRALGFSMRVERS+V  VK +  K +   ED  K + A + SA+++YE R  E  A    XXXXXXXXXXXXXXXXXXXX         AAMMGFGGF
Sbjct:    7 SDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGF 230          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.930e-45
Identity = 123/227 (54.19%), Postives = 150/227 (66.08%), Query Frame = 1
Query:   31 VAAMSKDLGYKQTQDVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGFG 711
            +A   K++G  Q     RRTWD   YE +A+ER+ + +  +        P   ++EF+ AE  AAGPAGS RAFL NR   + LE   GKTQ+++        GGW+C+ C+CLLKDS NYLDHINGKKHQR LGFSMRVERSTV QV  RFK  K+ +ED+    A +P+A+E YE R     EEE XXXXXXXXXXXXXXXXXXXX  +  DPD+ A MGFGGFG
Sbjct:    1 MAEEKKNVGGAQ-----RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSV-ATRPTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFG 221          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 6.840e-45
Identity = 99/221 (44.80%), Postives = 142/221 (64.25%), Query Frame = 1
Query:   73 DVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFE---------DPDIAAMMGFGGF 708
            +V RRTWD +++E  AKER+EK +   + E + PG   K+EEF++AE GAAGP GS+RA+L++R+  + LE ++GK QVV+ ++AP  QGG+WC+ C+CLLKDS+ YLDHINGKKHQ+ALG+SMRVER  V +VK R    K+ E++KKK    + SA++ Y+ +  +   +EA                      + E         DP++AA+MGFGGF
Sbjct:   17 NVERRTWDLEHFEKIAKERLEK-EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGP-RESAIDAYQKKLEK---DEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA)

HSP 1 Score: 160 bits (404), Expect = 8.380e-39
Identity = 86/163 (52.76%), Postives = 122/163 (74.85%), Query Frame = 1
Query:   73 DVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYE 561
            +V RRTWD +++E  AKER+EK +   + E + PG   K+EEF++AE GAAGP GS+RA+L++R+  + LE ++GK QVV+ ++AP  QGG+WC+ C+CLLKDS+ YLDHINGKKHQ+ALG+SMRVER  V +VK R    K+ E++K+K    + SA++ YE
Sbjct:   17 NVERRTWDLEHFEKIAKERLEK-EASGDVEKKKPGFVRKREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAGP-RESAIDAYE 177          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: UPI000719CFDE (zinc finger matrin-type protein 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CFDE)

HSP 1 Score: 144 bits (364), Expect = 4.520e-37
Identity = 105/214 (49.07%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGFGPKK 720
            HR+ WD+D+YE+ AKERIE      E +  A G +SK+   K             R  L+ R  KVDLES+LGK+QV++     + QGG++C  C C++KDS+N+LDHINGKKHQR LG SM+VERST+ QVK RF+ +K+  E+KKK          D+E R +E  EE  XXXXXXXXXXXXXX        Q  DPD+A++MGF GFG  K
Sbjct:   11 HRKKWDKDHYESLAKERIE------EEQRMALGIQSKEMPVK-------------RELLKQRDYKVDLESKLGKSQVITKTTPAACQGGYYCNVCDCIVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKKRFELNKKKMEEKKKDY--------DFEQRIQELREEXXXXXXXXXXXXXXXXRKADDSIEQSLDPDMASLMGFSGFGTTK 197          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A7M7NK23_STRPU (Matrin-type domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NK23_STRPU)

HSP 1 Score: 143 bits (361), Expect = 1.630e-36
Identity = 91/211 (43.13%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGFG 711
            HRR WDRD YE  AKER+++     E E +A   R +KE           P   +R  L+ R  KVDL+S+LGK+QV++     S  GG++C+ C C++KDS+N+LDHINGKKHQR LG SM VERS++ QVK RF+ +K+  E+KKK          D+EAR +E  EEE                          DPD+A+MMGF GFG
Sbjct:   17 HRRKWDRDEYEKLAKERLDQ-----ELEAQAEKERRRKEP----------PV--KRELLKQRDYKVDLDSKLGKSQVITKTTPSSQMGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSMNVERSSLDQVKKRFEMNKKKVEEKKKDY--------DFEARLQELKEEEEKHKAYQREKRKDRKRRADDGVIDRIDPDMASMMGFAGFG 202          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A8B7XWW6_ACAPL (zinc finger matrin-type protein 2-like n=3 Tax=Valvatida TaxID=41166 RepID=A0A8B7XWW6_ACAPL)

HSP 1 Score: 143 bits (360), Expect = 2.210e-36
Identity = 108/215 (50.23%), Postives = 138/215 (64.19%), Query Frame = 1
Query:   79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFE-DPDIAAMMGFGGFGPKK 720
            HRR WDRD +E  AKER++  +D  ++   A   +S++   K             R  L+ R  KVDLESRLGK+QV++     S  GG++C  C C++KDS+N+LDHINGKKHQR LG SM+VERST+ QVK RF+ +K+ +E+KKK          D+E+R +E  EEEAXXXXXXXXXXXXXXXX          DPD+AAMMGF GFG  K
Sbjct:   15 HRRKWDRDEFEKLAKERLQAEEDESDS---ATDKKSRQPPVK-------------RELLKQRDYKVDLESRLGKSQVITKTTPSSQMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKRRFELNKRKKEEKKKDY--------DFESRMQELREEEAXXXXXXXXXXXXXXXXAEDDDLDSGLDPDMAAMMGFSGFGSTK 205          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: UPI0002658601 (zinc finger matrin-type protein 2 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658601)

HSP 1 Score: 141 bits (355), Expect = 1.290e-35
Identity = 112/220 (50.91%), Postives = 139/220 (63.18%), Query Frame = 1
Query:   79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGS-----QRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAA-QFEDPDIAAMMGFGGFGPKK 720
            HRR WDRD YE RAKER E GD+           RS  ++ +     + GP+ S     QR  L+ R+ KVDL+SRLGKT V+S  A  S  GG++C  C C++KDS+N+LDHINGKKHQR LG SM+VERS++ QVKNR + +++  E+KKK          +Y    R R  EE XXXXXXXXXXXXXXXX    +  Q  DPD+AAMMGF GFG  K
Sbjct:    9 HRRKWDRDEYEKRAKERAE-GDNEK---------RSLSDDDEDGCGPSVGPSSSREKKPQRELLKPRQYKVDLDSRLGKTTVISKTADHSQAGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLDQVKNRLEMNRRKVEEKKK----------EYNLSERIREVEEXXXXXXXXXXXXXXXXXRKIDSEDQGLDPDMAAMMGFSGFGGSK 208          
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 142 bits (359), Expect = 1.650e-35
Identity = 124/256 (48.44%), Postives = 152/256 (59.38%), Query Frame = 1
Query:   40 MSKDLGYKQTQDVHRRTWDRDYYEARAKERI-------------EKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQG-GWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDY-----EARTRERAE-----------EEAXXXXXXXXXXXXXXXXXXXXAAQFE--DPDIAAMMGFGGFG 711
            M+ +L YKQ  +V RR WD + YE RAKER              +KG D   A  +     S KEEF++A   AAGP GS+RAFL+ R+  +DLES++G +++VS+  A    G GW C+ C C LKDSL YLDHINGKKHQR LGF+MRVERST  QV +R K   Q  + +K+ +      L +      EA  RER E           E   XXXXXXXXXXXXXXXXXX    FE  DP++AAMMGF GFG
Sbjct:    9 MASNLNYKQVANVSRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDD-SNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFG 263          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE3.900e-7969.60U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA1.980e-5561.16U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2WR40_9STRA2.930e-4554.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U2Z2_9STRA6.840e-4544.80Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A4D9DA28_9STRA8.380e-3952.76U1-type domain-containing protein n=1 Tax=Nannochl... [more]
UPI000719CFDE4.520e-3749.07zinc finger matrin-type protein 2-like n=1 Tax=Pri... [more]
A0A7M7NK23_STRPU1.630e-3643.13Matrin-type domain-containing protein n=2 Tax=Echi... [more]
A0A8B7XWW6_ACAPL2.210e-3650.23zinc finger matrin-type protein 2-like n=3 Tax=Val... [more]
UPI00026586011.290e-3550.91zinc finger matrin-type protein 2 n=1 Tax=Galendro... [more]
A0A1Z5KJY6_FISSO1.650e-3548.44U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:1074339..1077403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.5
Seed ortholog evalue3e-66
Seed eggNOG ortholog2880.D8LQ99
Preferred nameSNU23
KEGG koko:K12848
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG4727@1,KOG4727@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-26_005600.1
Exons3
Model size1475
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.165.1prot_S-ischiensis_contig1.165.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 1074378..1076651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815391.2229679-UTR-S-ischiensis_contig1:1074338..10743771622815391.2229679-UTR-S-ischiensis_contig1:1074338..1074377Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1074339..1074377 +
1695739676.526079-UTR-S-ischiensis_contig1:1074338..10743771695739676.526079-UTR-S-ischiensis_contig1:1074338..1074377Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1074339..1074377 +
1622815391.277005-UTR-S-ischiensis_contig1:1076651..10774031622815391.277005-UTR-S-ischiensis_contig1:1076651..1077403Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1076652..1077403 +
1695739676.5719564-UTR-S-ischiensis_contig1:1076651..10774031695739676.5719564-UTR-S-ischiensis_contig1:1076651..1077403Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1076652..1077403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815391.2377741-CDS-S-ischiensis_contig1:1074377..10748091622815391.2377741-CDS-S-ischiensis_contig1:1074377..1074809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1074378..1074809 +
1695739676.5378768-CDS-S-ischiensis_contig1:1074377..10748091695739676.5378768-CDS-S-ischiensis_contig1:1074377..1074809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1074378..1074809 +
1622815391.2516668-CDS-S-ischiensis_contig1:1075320..10754311622815391.2516668-CDS-S-ischiensis_contig1:1075320..1075431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1075321..1075431 +
1695739676.5474308-CDS-S-ischiensis_contig1:1075320..10754311695739676.5474308-CDS-S-ischiensis_contig1:1075320..1075431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1075321..1075431 +
1622815391.2665167-CDS-S-ischiensis_contig1:1076510..10766511622815391.2665167-CDS-S-ischiensis_contig1:1076510..1076651Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1076511..1076651 +
1695739676.5627787-CDS-S-ischiensis_contig1:1076510..10766511695739676.5627787-CDS-S-ischiensis_contig1:1076510..1076651Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1076511..1076651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.165.1

>prot_S-ischiensis_contig1.165.1 ID=prot_S-ischiensis_contig1.165.1|Name=mRNA_S-ischiensis_contig1.165.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp
MSKDLGYKQTQDVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSK
KEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQ
GGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFK
KHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEARRKRQKKEAKSAARQ
KEEEEAAQFEDPDIAAMMGFGGFGPKK*
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mRNA from alignment at S-ischiensis_contig1:1074339..1077403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.165.1 ID=mRNA_S-ischiensis_contig1.165.1|Name=mRNA_S-ischiensis_contig1.165.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3065bp|location=Sequence derived from alignment at S-ischiensis_contig1:1074339..1077403+ (Schizocladia ischiensis KU_0333)
AAAGGAACGGGGGTGGGGCGGTTACCTGAAGTTGCGGCCATGTCGAAGGA TTTGGGCTACAAGCAGACGCAAGACGTCCACCGTCGCACTTGGGATCGCG ACTACTACGAGGCCCGCGCCAAGGAGCGCATTGAGAAGGGGGATGACTTC GTCGAGGCCGAGCCAGAGGCGCCTGGGCCGCGATCAAAGAAGGAAGAGTT CAAGTCAGCGGAATACGGGGCCGCCGGGCCTGCGGGTTCGCAGCGGGCGT TCCTACAGAACCGAAAAAACAAGGTTGACCTGGAGTCTAGATTGGGCAAG ACCCAGGTGGTGAGCAGCGCGGCGGCGCCGTCGGCGCAAGGGGGTTGGTG GTGCGAGACTTGCAAATGTCTGCTGAAGGACAGCCTGAACTACCTGGACC ACATCAACGGCAAGAAGCACCAGCGCGCCTTGGGCTTCAGCATGCGGGTT GAGAGGTCGACGGTCAGCCAGGCGGGTGTACAGTAGTACTTCGAAGTACT GTAGCTGTTGTTGCGAATCCAGGTGGGCATGGTTGGGGTGTGTTGGCTCG CCGCGGCTCTTGGACGGTAATAATAGGTTTGTTTGTGCCCCCCGGAAAAA CTCATGCGTAAATATCTCACACCGCCGCGGATGTAAATGGTACCTCATTG CTTTGAAGTGTCTGAGACCATACAGACAAGTACCACTGCCCCCAAAACAC GCACAAACCCACATGACGCCAGACATCTCCGCAGTATAGGGGGGGGCGGG GGGGGGGGGCACTGTGTTGTCAGCTTGGACAGGTTTCCTCCTTTGCCACG CCGACCGCGCCTCTATGTGCGGGCTGTGATTCATATAGATTGTAGTGAGG TACAATCGCACGTGTGTGAGATTGAGTGTTCTCGTACTAGTGGGTTGTCC CATGGAAGAATTGAGTGTTCTCATATTAGTGGTTATCACATCAAAGAGCT AAACACACAGAATTACGTGTGGGCTGTCGCAGGTCAAGAATCGCTTCAAG AAGCACAAACAGGACGAGGAGGACAAGAAGAAGGGGAATGCTGGCAAGCC CTCTGCGCTAGAAGACTACGAGGCCAGGACACGCGAGCGTGCGGTGAGTG ACCCCTATGAGATGTGAGCGCCCGCGGGCGCCTCTATAGACGTGCTATAT ACAATGCAACGCGCCAGTGTTCCAGCGTGTTCAACTCTTTAACCCTTTTA TCCCTGATACATTGGACTTGCACACCAAAACCCTGTGACTACACAGACCC CAGGGCTAAAAGGGGTAACTGGTGCACCGGTGACCTGACCTGCTGAACTA CTTTGAAACACAAAATTTTATGCTCTTTCATGGTCTCGGAACTACGGAAG GCACAGTGCGAGTGCATGTATGTACGTATACCGTAGTCGGCGGAGAGATG TTGCCCCCACGGGACAATTTTCGGGGGAATATTTCTAGCCGGGAACGTCC CGAATTGTCCCGAAAACTCTCCGAAAAGTTCCCCCAGGTCCTGAGGGAGA TTTCCCGAGTTTTCCCGCGCGAATCCGACCAGTATTCGGCGAGAAAAGTT CTCCCGAAGATTGGCATGGGGGGGCAAGATCTCTCCGCCGATTACGGTAC TTAGGGAAGCCTGCTTGGCGAGTCGTCGTTTCGAACCTTTCTTTCGGTGT TGATGTAAAGCCAGCGCCGAAACCCTCAACAAACTGGTCGCCAATGCTGT TTTGTTTTTCGTTTTCCATTGAGATCCGTGCATGTATACTTATTTCGCCC GAGACAGCCGTTACGAATCAGCATGGCACTCCCTCACTTAGTTTCGTCTC GCGCGTGCCGTGCAAACAGGAGCAGGGTTGTCACTTAACCCCTACATGGT GCCCTTTTACGCCCGTAATTAGAGTTAATTAGGGGTACAGTAGTTGGACC TAACATTAAGGCTAATATACACTCAGTATATACTTCGTATATATGTACTC ACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCACACGCCTCTGTCGA GACGGAGCAGCTAATTAGGCCCTAATTAAGCTCTGAGTGCCAACCCTGAC CACAGGAGGAGGAGGCCCGACGCAAGCGCCAGAAGGAGGCCCTTATTAGA GTTAGGGGTAATTGGACCTAAAATGAAGGCTAATTTGGCCGTAGTTAACC TCTAAGCGCCAACCCTGAATAGGAGGAGGAGGCCCGACGCAAGCGCCAGA AGAAGGAGGCCAAGAGTGCGGCGCGGCAGAAGGAAGAAGAGGAGGCCGCG CAGTTTGAGGACCCAGACATCGCCGCCATGATGGGGTTCGGGGGGTTCGG GCCGAAGAAATGACTGCCGGAGGGCCGTGCCATGCCACGCACTTGCTCGA GTTGTAGCAGCCCTGCAGTATTGTATTTCGTGAAACTTCCGAGGGGGCTT GGCTGGAGGCGGGTGGGTCAGGGAGGCGTTTTTTCTCCCCAGGGGCCATC CGTCGTCGCCGCTGAGCTGCGTGCAGCCGCCCGTTCGAAGGGCTAAGTAT TTCACCCCTCACAGTAGACGGCGGCGGTGTGCTTAGCTGCGTACAGTACA GTACAGTATAGTACACTACAGTACAGTACAGTATAGTACAGTACAGTACA GTACAACACAGTGCAGCGCAGTGCTGCACCGCAGAGCACTCCTGTGGCAA CTAGAGCACTAGATGGGCAACTATTGTACACATTGTACCTGCACGAGGTC CTGTTGTTGGGCGAGGCAGCAGCGCGGTATACCCTTGTGGCCCTCTTTTG TGTGAGGGGCCACCCCTTAGAGGACCGTGGCACACTACAGTCAAGAGAAC TAGTTAAAAAATGATTTTCGGATTTTCAGATATCGACTACGGCTGAACTG CTGCCCCGATCGCGCTGCCAGTCGGCGTGGAATGAGCCGGGGGCAAGGGC AAGACAGCCCCATCTCCTCAGCACCATACTGTCGAAAACGCACGGCGAAG GTGCCCCTGTTATCGGGGGAAACGGAGACTGGCTGTAGAGCCTCTACAAT GTAAACCACAGGAGCAGAGGGAGGGATTATACTTTAGGGGAGCTAGGGGA GGGATTGTACTTCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:1074339..1077403+

>mRNA_S-ischiensis_contig1.165.1 ID=mRNA_S-ischiensis_contig1.165.1|Name=mRNA_S-ischiensis_contig1.165.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig1:1074339..1077403+ (Schizocladia ischiensis KU_0333)
ATGTCGAAGGATTTGGGCTACAAGCAGACGCAAGACGTCCACCGTCGCAC
TTGGGATCGCGACTACTACGAGGCCCGCGCCAAGGAGCGCATTGAGAAGG
GGGATGACTTCGTCGAGGCCGAGCCAGAGGCGCCTGGGCCGCGATCAAAG
AAGGAAGAGTTCAAGTCAGCGGAATACGGGGCCGCCGGGCCTGCGGGTTC
GCAGCGGGCGTTCCTACAGAACCGAAAAAACAAGGTTGACCTGGAGTCTA
GATTGGGCAAGACCCAGGTGGTGAGCAGCGCGGCGGCGCCGTCGGCGCAA
GGGGGTTGGTGGTGCGAGACTTGCAAATGTCTGCTGAAGGACAGCCTGAA
CTACCTGGACCACATCAACGGCAAGAAGCACCAGCGCGCCTTGGGCTTCA
GCATGCGGGTTGAGAGGTCGACGGTCAGCCAGATGTCGAAGGATTTGGGC
TACAAGCAGACGCAAGACGTCCACCGTCGCACTTGGGATCGCGACTACTA
CGAGGCCCGCGCCAAGGAGCGCATTGAGAAGGGGGATGACTTCGTCGAGG
CCGAGCCAGAGGCGCCTGGGCCGCGATCAAAGAAGGAAGAGTTCAAGTCA
GCGGAATACGGGGCCGCCGGGCCTGCGGGTTCGCAGCGGGCGTTCCTACA
GAACCGAAAAAACAAGGTTGACCTGGAGTCTAGATTGGGCAAGACCCAGG
TGGTGAGCAGCGCGGCGGCGCCGTCGGCGCAAGGGGGTTGGTGGTGCGAG
ACTTGCAAATGTCTGCTGAAGGACAGCCTGAACTACCTGGACCACATCAA
CGGCAAGAAGCACCAGCGCGCCTTGGGCTTCAGCATGCGGGTTGAGAGGT
CGACGGTCAGCCAGGTCAAGAATCGCTTCAAGAAGCACAAACAGGACGAG
GAGGACAAGAAGAAGGGGAATGCTGGCAAGCCCTCTGCGCTAGAAGACTA
CGAGGCCAGGACACGCGAGCGTGCGGTCAAGAATCGCTTCAAGAAGCACA
AACAGGACGAGGAGGACAAGAAGAAGGGGAATGCTGGCAAGCCCTCTGCG
CTAGAAGACTACGAGGCCAGGACACGCGAGCGTGCGGAGGAGGAGGCCCG
ACGCAAGCGCCAGAAGAAGGAGGCCAAGAGTGCGGCGCGGCAGAAGGAAG
AAGAGGAGGCCGCGCAGTTTGAGGACCCAGACATCGCCGCCATGATGGGG
TTCGGGGGGTTCGGGCCGAAGAAATGAGAGGAGGAGGCCCGACGCAAGCG
CCAGAAGAAGGAGGCCAAGAGTGCGGCGCGGCAGAAGGAAGAAGAGGAGG
CCGCGCAGTTTGAGGACCCAGACATCGCCGCCATGATGGGGTTCGGGGGG
TTCGGGCCGAAGAAATGA
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