mRNA_S-ischiensis_contig1.165.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 255 bits (652), Expect = 3.900e-79 Identity = 158/227 (69.60%), Postives = 187/227 (82.38%), Query Frame = 1
Query: 40 MSKDLGYKQTQDVH-RRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAA--QFEDPDIAAMMGFGGFG 711
MSKDLGYKQ ++V RRTWDRDYYEA+AKERIE+GDD+ E + AP RS+KEEF+ A GAAGPAGS RA+L+ R+ KVDL S+LGKTQVV++A+ PS QGGW+CE CKC LKDS+NYLDHINGKKHQR LG+SMRVERSTVSQVK+R K HKQ EED+ G KPSA ++++ R RE + E XXXXXXXXXXXXXXXXXXXX +F+DP++AAMMGFGGFG
Sbjct: 1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFG 227
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.980e-55 Identity = 137/224 (61.16%), Postives = 162/224 (72.32%), Query Frame = 1
Query: 43 SKDLGYKQTQDVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGN-AGKPSALEDYEARTRE-RAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGF 708
S DLG KQ +V RR+WD + YE +AKER+E+GD+ EA P + KEEF+ A GA GPAGS+RA+L+ R KVDLESRL KTQV++SAAA S+QGG+WCE CKCLLKDS+ YLDHINGKKHQRALGFSMRVERS+V VK + K + ED K + A + SA+++YE R E A XXXXXXXXXXXXXXXXXXXX AAMMGFGGF
Sbjct: 7 SDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGF 230
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 167 bits (423), Expect = 2.930e-45 Identity = 123/227 (54.19%), Postives = 150/227 (66.08%), Query Frame = 1
Query: 31 VAAMSKDLGYKQTQDVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGFG 711
+A K++G Q RRTWD YE +A+ER+ + + + P ++EF+ AE AAGPAGS RAFL NR + LE GKTQ+++ GGW+C+ C+CLLKDS NYLDHINGKKHQR LGFSMRVERSTV QV RFK K+ +ED+ A +P+A+E YE R EEE XXXXXXXXXXXXXXXXXXXX + DPD+ A MGFGGFG
Sbjct: 1 MAEEKKNVGGAQ-----RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSV-ATRPTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFG 221
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 166 bits (421), Expect = 6.840e-45 Identity = 99/221 (44.80%), Postives = 142/221 (64.25%), Query Frame = 1
Query: 73 DVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFE---------DPDIAAMMGFGGF 708
+V RRTWD +++E AKER+EK + + E + PG K+EEF++AE GAAGP GS+RA+L++R+ + LE ++GK QVV+ ++AP QGG+WC+ C+CLLKDS+ YLDHINGKKHQ+ALG+SMRVER V +VK R K+ E++KKK + SA++ Y+ + + +EA + E DP++AA+MGFGGF
Sbjct: 17 NVERRTWDLEHFEKIAKERLEK-EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGP-RESAIDAYQKKLEK---DEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA) HSP 1 Score: 160 bits (404), Expect = 8.380e-39 Identity = 86/163 (52.76%), Postives = 122/163 (74.85%), Query Frame = 1
Query: 73 DVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYE 561
+V RRTWD +++E AKER+EK + + E + PG K+EEF++AE GAAGP GS+RA+L++R+ + LE ++GK QVV+ ++AP QGG+WC+ C+CLLKDS+ YLDHINGKKHQ+ALG+SMRVER V +VK R K+ E++K+K + SA++ YE
Sbjct: 17 NVERRTWDLEHFEKIAKERLEK-EASGDVEKKKPGFVRKREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAGP-RESAIDAYE 177
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: UPI000719CFDE (zinc finger matrin-type protein 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CFDE) HSP 1 Score: 144 bits (364), Expect = 4.520e-37 Identity = 105/214 (49.07%), Postives = 135/214 (63.08%), Query Frame = 1
Query: 79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGFGPKK 720
HR+ WD+D+YE+ AKERIE E + A G +SK+ K R L+ R KVDLES+LGK+QV++ + QGG++C C C++KDS+N+LDHINGKKHQR LG SM+VERST+ QVK RF+ +K+ E+KKK D+E R +E EE XXXXXXXXXXXXXX Q DPD+A++MGF GFG K
Sbjct: 11 HRKKWDKDHYESLAKERIE------EEQRMALGIQSKEMPVK-------------RELLKQRDYKVDLESKLGKSQVITKTTPAACQGGYYCNVCDCIVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKKRFELNKKKMEEKKKDY--------DFEQRIQELREEXXXXXXXXXXXXXXXXRKADDSIEQSLDPDMASLMGFSGFGTTK 197
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A7M7NK23_STRPU (Matrin-type domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NK23_STRPU) HSP 1 Score: 143 bits (361), Expect = 1.630e-36 Identity = 91/211 (43.13%), Postives = 120/211 (56.87%), Query Frame = 1
Query: 79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFEDPDIAAMMGFGGFG 711
HRR WDRD YE AKER+++ E E +A R +KE P +R L+ R KVDL+S+LGK+QV++ S GG++C+ C C++KDS+N+LDHINGKKHQR LG SM VERS++ QVK RF+ +K+ E+KKK D+EAR +E EEE DPD+A+MMGF GFG
Sbjct: 17 HRRKWDRDEYEKLAKERLDQ-----ELEAQAEKERRRKEP----------PV--KRELLKQRDYKVDLDSKLGKSQVITKTTPSSQMGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSMNVERSSLDQVKKRFEMNKKKVEEKKKDY--------DFEARLQELKEEEEKHKAYQREKRKDRKRRADDGVIDRIDPDMASMMGFAGFG 202
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A8B7XWW6_ACAPL (zinc finger matrin-type protein 2-like n=3 Tax=Valvatida TaxID=41166 RepID=A0A8B7XWW6_ACAPL) HSP 1 Score: 143 bits (360), Expect = 2.210e-36 Identity = 108/215 (50.23%), Postives = 138/215 (64.19%), Query Frame = 1
Query: 79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAAQFE-DPDIAAMMGFGGFGPKK 720
HRR WDRD +E AKER++ +D ++ A +S++ K R L+ R KVDLESRLGK+QV++ S GG++C C C++KDS+N+LDHINGKKHQR LG SM+VERST+ QVK RF+ +K+ +E+KKK D+E+R +E EEEAXXXXXXXXXXXXXXXX DPD+AAMMGF GFG K
Sbjct: 15 HRRKWDRDEFEKLAKERLQAEEDESDS---ATDKKSRQPPVK-------------RELLKQRDYKVDLESRLGKSQVITKTTPSSQMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKRRFELNKRKKEEKKKDY--------DFESRMQELREEEAXXXXXXXXXXXXXXXXAEDDDLDSGLDPDMAAMMGFSGFGSTK 205
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: UPI0002658601 (zinc finger matrin-type protein 2 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658601) HSP 1 Score: 141 bits (355), Expect = 1.290e-35 Identity = 112/220 (50.91%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 79 HRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGS-----QRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQGGWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDYEARTRERAEEEAXXXXXXXXXXXXXXXXXXXXAA-QFEDPDIAAMMGFGGFGPKK 720
HRR WDRD YE RAKER E GD+ RS ++ + + GP+ S QR L+ R+ KVDL+SRLGKT V+S A S GG++C C C++KDS+N+LDHINGKKHQR LG SM+VERS++ QVKNR + +++ E+KKK +Y R R EE XXXXXXXXXXXXXXXX + Q DPD+AAMMGF GFG K
Sbjct: 9 HRRKWDRDEYEKRAKERAE-GDNEK---------RSLSDDDEDGCGPSVGPSSSREKKPQRELLKPRQYKVDLDSRLGKTTVISKTADHSQAGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLDQVKNRLEMNRRKVEEKKK----------EYNLSERIREVEEXXXXXXXXXXXXXXXXXRKIDSEDQGLDPDMAAMMGFSGFGGSK 208
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO) HSP 1 Score: 142 bits (359), Expect = 1.650e-35 Identity = 124/256 (48.44%), Postives = 152/256 (59.38%), Query Frame = 1
Query: 40 MSKDLGYKQTQDVHRRTWDRDYYEARAKERI-------------EKGDDFVEAEPEAPGPRSKKEEFKSAEYGAAGPAGSQRAFLQNRKNKVDLESRLGKTQVVSSAAAPSAQG-GWWCETCKCLLKDSLNYLDHINGKKHQRALGFSMRVERSTVSQVKNRFKKHKQDEEDKKKGNAGKPSALEDY-----EARTRERAE-----------EEAXXXXXXXXXXXXXXXXXXXXAAQFE--DPDIAAMMGFGGFG 711
M+ +L YKQ +V RR WD + YE RAKER +KG D A + S KEEF++A AAGP GS+RAFL+ R+ +DLES++G +++VS+ A G GW C+ C C LKDSL YLDHINGKKHQR LGF+MRVERST QV +R K Q + +K+ + L + EA RER E E XXXXXXXXXXXXXXXXXX FE DP++AAMMGF GFG
Sbjct: 9 MASNLNYKQVANVSRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDD-SNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFG 263 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.165.1 >prot_S-ischiensis_contig1.165.1 ID=prot_S-ischiensis_contig1.165.1|Name=mRNA_S-ischiensis_contig1.165.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp MSKDLGYKQTQDVHRRTWDRDYYEARAKERIEKGDDFVEAEPEAPGPRSKback to top mRNA from alignment at S-ischiensis_contig1:1074339..1077403+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.165.1 ID=mRNA_S-ischiensis_contig1.165.1|Name=mRNA_S-ischiensis_contig1.165.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3065bp|location=Sequence derived from alignment at S-ischiensis_contig1:1074339..1077403+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:1074339..1077403+ >mRNA_S-ischiensis_contig1.165.1 ID=mRNA_S-ischiensis_contig1.165.1|Name=mRNA_S-ischiensis_contig1.165.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig1:1074339..1077403+ (Schizocladia ischiensis KU_0333)back to top |