mRNA_S-ischiensis_contig1.137.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.137.1
Unique NamemRNA_S-ischiensis_contig1.137.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.137.1 vs. uniprot
Match: D7FN90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN90_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.160e-11
Identity = 56/192 (29.17%), Postives = 92/192 (47.92%), Query Frame = 1 
Query:    1 RVFGAGQLDHARPCRLFAEAYGPGNMRPR-RDFDFMFRQSMVILRMEAGQGGRVIPRVCRLSEQFEKNFGFTNSELEGADLLEAVMGRGTNQGTVQELMNGVVQG-GPCVTRYINLYTKSGDPFSSYVTVRPLSSNRQPPPGCEAERSSPGLPT-YAMVTLVHVSTVGYMTTPQLLEAFFRNTGGAATDKAS 567
            RVFG  + D    C LF E +   N     R++DF+FR   +++R+E G GG V+P V  L E    +FG    +L G  L        TN+ T  ++M  + +     +  Y+NL +K     SS+V++R LS+  +P    E       LP  Y ++ +   S +G +  P+LL+  +      A+ +A+
Sbjct:   22 RVFGGSEEDRELSCGLFGEEFEMKNAEIEDREYDFVFRHGTILVRVEEGVGGEVVPMVFSLCEYATDHFG----DLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSN--RPERAHEQRVGHEHLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKRAA 207
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BLAST of mRNA_S-ischiensis_contig1.137.1 vs. uniprot
Match: A0A6H5KWT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.020e-11
Identity = 56/181 (30.94%), Postives = 87/181 (48.07%), Query Frame = 1 
Query:    1 RVFGAGQLDHARPCRLFAEAYGPGNMRPR-RDFDFMFRQSMVILRMEAGQGGRVIPRVCRLSEQFEKNFGFTNSELEGADLLEAVMGRGTNQGTVQELMNGVVQG-GPCVTRYINLYTKSGDPFSSYVTVRPLSSN--RQPPPGCEAERSSPGLPTYAMVTLVHVSTVGYMTTPQLLEAFF 531
            RVFG  + D A PC LF E +   N     R++DF+FR   +++R+E G  G V+P V  L E    +FG    +L G  L        TN+ T  ++M  + +     +  Y+NL +K     SS+V++R LS    R P      ER  P    Y ++ +   S +G +  P+LL+  +
Sbjct:  497 RVFGGSEEDRALPCGLFGEEFEMKNAEIEDREYDFVFRHGTILVRVEEGLNGEVVPMVFSLCEYATDHFG----DLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSKRPERAPEQRFGHERLPPW---YVLLKVCLPSALGLIKEPELLQQLY 670
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN90_ECTSI3.160e-1129.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWT1_9PHAE6.020e-1130.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:855856..858505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003410.1
Exons5
Model size568
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.137.1prot_S-ischiensis_contig1.137.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 855856..858505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.537088-CDS-S-ischiensis_contig1:855855..8559961622815388.537088-CDS-S-ischiensis_contig1:855855..855996Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 855856..855996 -
1695739675.1786265-CDS-S-ischiensis_contig1:855855..8559961695739675.1786265-CDS-S-ischiensis_contig1:855855..855996Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 855856..855996 -
1622815388.5506256-CDS-S-ischiensis_contig1:856354..8564511622815388.5506256-CDS-S-ischiensis_contig1:856354..856451Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 856355..856451 -
1695739675.191819-CDS-S-ischiensis_contig1:856354..8564511695739675.191819-CDS-S-ischiensis_contig1:856354..856451Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 856355..856451 -
1622815388.5633142-CDS-S-ischiensis_contig1:857340..8574261622815388.5633142-CDS-S-ischiensis_contig1:857340..857426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 857341..857426 -
1695739675.202987-CDS-S-ischiensis_contig1:857340..8574261695739675.202987-CDS-S-ischiensis_contig1:857340..857426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 857341..857426 -
1622815388.5743914-CDS-S-ischiensis_contig1:857967..8580421622815388.5743914-CDS-S-ischiensis_contig1:857967..858042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 857968..858042 -
1695739675.213422-CDS-S-ischiensis_contig1:857967..8580421695739675.213422-CDS-S-ischiensis_contig1:857967..858042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 857968..858042 -
1622815388.5852757-CDS-S-ischiensis_contig1:858337..8585051622815388.5852757-CDS-S-ischiensis_contig1:858337..858505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 858338..858505 -
1695739675.2739565-CDS-S-ischiensis_contig1:858337..8585051695739675.2739565-CDS-S-ischiensis_contig1:858337..858505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 858338..858505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.137.1

>prot_S-ischiensis_contig1.137.1 ID=prot_S-ischiensis_contig1.137.1|Name=mRNA_S-ischiensis_contig1.137.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=189bp
RVFGAGQLDHARPCRLFAEAYGPGNMRPRRDFDFMFRQSMVILRMEAGQG
GRVIPRVCRLSEQFEKNFGFTNSELEGADLLEAVMGRGTNQGTVQELMNG
VVQGGPCVTRYINLYTKSGDPFSSYVTVRPLSSNRQPPPGCEAERSSPGL
PTYAMVTLVHVSTVGYMTTPQLLEAFFRNTGGAATDKAS
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mRNA from alignment at S-ischiensis_contig1:855856..858505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.137.1 ID=mRNA_S-ischiensis_contig1.137.1|Name=mRNA_S-ischiensis_contig1.137.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2650bp|location=Sequence derived from alignment at S-ischiensis_contig1:855856..858505- (Schizocladia ischiensis KU_0333)
CGCGTTTTCGGGGCGGGGCAGCTGGACCACGCCAGGCCGTGCAGGCTCTT
TGCGGAGGCCTACGGGCCCGGGAACATGCGCCCGCGAAGAGACTTTGACT
TCATGTTCAGGCAGAGCATGGTCATCTTGAGGATGGAGGCTGGGCAGGGG
GGGCGCGTCATTCCCCGGGTGAGTACGGGGGCATGTTCGGGCTCGTGCTG
TGTATGTTGTGGGTGCTGGGGAGGGAGCGTGGGAAGGGAGGGAGAGAGAG
GGGGAGCAGGTGTCTGTGTCGACACATAGCCTGATTTTGAGAGGGAGGGA
GGGAGGGAGAGCGGGAGAGAGAGAGGGAGAGAGGGAGAGGGGGAGAGAGA
GAGAGAGAGAGAGAGATTGACACGCCCCCACCTCATCAGCGTCACCCCCG
TCCACCGCCGCCTCGCGCTGGTCCCCCCCCACCCCGCGCCCCCCGCCCCT
GGTCTGCTCACAGGTATGCCGGCTGAGTGAGCAGTTCGAGAAGAACTTTG
GTTTCACCAACAGCGAGCTGGAGGGGGCAGACCTGCTCGTGAGTTATCTT
GCGAAAGTTTGTGACGTGGTGTGATGATGCGCTGTGATGTGTACTCTATT
GTGCTGTACTCGTACGTAGTTTGACATCGTATCGCATCAAATCTCTGCCG
AGCACACTCAGTGTCTCATGGGGGTGAGATTGTACCGCCGTGCCTCGTTA
AGGTTTGTCCTGCGATGCAATGCGACGTAATGTGATGTGATGTGATGTTT
ACTCTATTGTACTGTAGTTTGACATCACATCGCATCACTTCGCATCGTCT
TAATCTCTACGAGAATGCCCCATTTCACGCTGGCGATAGATATTGCACGA
GTACCTCGTTATACAATCTGTTCGAGTCGCTGCTCTCGCCGTGGCGGCTT
CCCCCTCACCTCTCTTGCCCGAACGGGGCTTCCGTGACATGACCACTAAT
ACGAGAGCACTCAATTCTTGAATGGGATAACCACTACAGTATTACGAGAA
AACTCAATCTCACACACGTGCGATTGTACCTCGCTACAATTTATATGAGT
CACACGCTCCCGTTCCCCCCCCCGTGCAGGAAGCGGTGATGGGCAGAGGC
ACCAACCAGGGGACCGTCCAGGAGCTGATGAATGGTGTTGTCCAGGGAGG
GCCGTGCGTTACCAGGCGAGCCCTTGTGTTGCTAGTCATGCAAGGAGTTG
GGATACTTACCCCTCGCGTGAAATGTGCAATGTCAGCAAATGAATGTGCT
GCGGTGAACATGCTTTTAGGTTTTGGGATGGGGCCCCCGGGGACACGCAT
GCCATCACAATACCCCGTACCTTGATAAAAAAATGCTTCCCGAGCTCTAT
CTGTGTCTCTCTGTCTCTGCACCTATTGGCTTGTCCTGCGACACAACCTC
TAACTACTTGGGTATCCTGAAACTCAATCCGCTAACTACTGGGGTTCTCG
AAGCTCAAGTCTCCCCAATTACTACAGCAAGTAGTATCCTATATATACGT
TCTCGTACTCATCGGCTTTTCTTGCGACACAACCTCTTAACTACTTCAAA
GTTCTTGGGTGTCCTGAAAATCAATCCACTAACTACTTGGGTTCTCGAAA
CTCAAATCTCCCCAACTACTACAGTGGGTAGTGTCCTATATGCACTCGTG
CTCAATTGGCTTGTCCTGCGACACAACCTTGCGTCCATTGCCGACAGCCC
TAAGTCGAAGCTTCGGGTTTGCCCTCGCACGGAATAAACTGCACGCACAT
TCCGTACTTGGGGCAGAACAAACAAGGGAAACAAGAGAGGAAGTGATGTG
ATGTGATGCGATGTGATGTGCACTCTGATTCACTGTAGTCCCACATCACA
TCACATCACATATACTTCGAAGTATGTACTCAGAGCAGAACAAACAAGAG
AACCAAGAAAAGGAAGGACTCGGTTCCATCGGCGCCCCCCGCACCGCAGT
CGTAACTTCCGAATTATTGCACCGTACATTGCACAAACCTCTACTTTCCT
CTGGAGGGCCCTGACCGGCCGACGCCTCCCATGCCCCGCCCCCCCAACCC
CCAGGTACATCAACCTGTACACCAAGAGCGGCGACCCCTTCAGCAGCTAC
GTCACCGTGCGGCCGCTGTCCTCAAACCGGCAGCCGCCGCCGGGCTGTGA
GGTAAAAGGGCGCGCGCGACCAAGCCGGAAACTGTTTTTTTGCACGGAGA
TAGAACAAGCGAGTGGAAAGAAGAGGTGTCCCTACATACTACATGAGTTC
AGGGCCCCGTGCCCCCCGGAAGCCCTTCCTTTCACTCGCCTTGAGACTCG
CAGGAGACTGTTGCCGACTTGATCCCTGGCCCTAACCCTAATCCCTAACC
TAAACCCTGTCTGTTAACGGTCTGTTTAACTCCCAGAGGACGGCGGGACA
CTTCAAGCTTTGCAATACGTACACATCCCACACCAACCAACCCCCGGGCT
GTACAAGTATGTATCCTAGATTGCGGCAGACTGAGTGCGGCCCTAATACC
CGTTGGCAGGCGGAGCGGAGCAGCCCTGGCCTCCCCACGTATGCCATGGT
GACCCTCGTCCACGTGTCCACGGTGGGGTATATGACCACGCCGCAGCTCC
TGGAAGCCTTCTTCCGGAACACTGGCGGCGCTGCCACAGACAAAGCCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:855856..858505-

>mRNA_S-ischiensis_contig1.137.1 ID=mRNA_S-ischiensis_contig1.137.1|Name=mRNA_S-ischiensis_contig1.137.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1134bp|location=Sequence derived from alignment at S-ischiensis_contig1:855856..858505- (Schizocladia ischiensis KU_0333)
CGCGTTTTCGGGGCGGGGCAGCTGGACCACGCCAGGCCGTGCAGGCTCTT
TGCGGAGGCCTACGGGCCCGGGAACATGCGCCCGCGAAGAGACTTTGACT
TCATGTTCAGGCAGAGCATGGTCATCTTGAGGATGGAGGCTGGGCAGGGG
GGGCGCGTCATTCCCCGGCGCGTTTTCGGGGCGGGGCAGCTGGACCACGC
CAGGCCGTGCAGGCTCTTTGCGGAGGCCTACGGGCCCGGGAACATGCGCC
CGCGAAGAGACTTTGACTTCATGTTCAGGCAGAGCATGGTCATCTTGAGG
ATGGAGGCTGGGCAGGGGGGGCGCGTCATTCCCCGGGTATGCCGGCTGAG
TGAGCAGTTCGAGAAGAACTTTGGTTTCACCAACAGCGAGCTGGAGGGGG
CAGACCTGCTCGTATGCCGGCTGAGTGAGCAGTTCGAGAAGAACTTTGGT
TTCACCAACAGCGAGCTGGAGGGGGCAGACCTGCTCGAAGCGGTGATGGG
CAGAGGCACCAACCAGGGGACCGTCCAGGAGCTGATGAATGGTGTTGTCC
AGGGAGGGCCGTGCGTTACCAGGAAGCGGTGATGGGCAGAGGCACCAACC
AGGGGACCGTCCAGGAGCTGATGAATGGTGTTGTCCAGGGAGGGCCGTGC
GTTACCAGGTACATCAACCTGTACACCAAGAGCGGCGACCCCTTCAGCAG
CTACGTCACCGTGCGGCCGCTGTCCTCAAACCGGCAGCCGCCGCCGGGCT
GTGAGGTACATCAACCTGTACACCAAGAGCGGCGACCCCTTCAGCAGCTA
CGTCACCGTGCGGCCGCTGTCCTCAAACCGGCAGCCGCCGCCGGGCTGTG
AGGCGGAGCGGAGCAGCCCTGGCCTCCCCACGTATGCCATGGTGACCCTC
GTCCACGTGTCCACGGTGGGGTATATGACCACGCCGCAGCTCCTGGAAGC
CTTCTTCCGGAACACTGGCGGCGCTGCCACAGACAAAGCCAGCGCGGAGC
GGAGCAGCCCTGGCCTCCCCACGTATGCCATGGTGACCCTCGTCCACGTG
TCCACGGTGGGGTATATGACCACGCCGCAGCTCCTGGAAGCCTTCTTCCG
GAACACTGGCGGCGCTGCCACAGACAAAGCCAGC
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