mRNA_S-ischiensis_contig1.133.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.133.1
Unique NamemRNA_S-ischiensis_contig1.133.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.133.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.500e-27
Identity = 70/116 (60.34%), Postives = 85/116 (73.28%), Query Frame = 2 
Query:    2 LREALLEYEVVALGVAVRRACVASQAVAIAAASFCAKLEMMARGTLNCAE----AGCHGANKKDAAAELAGLWVRHGYLLQFEGLLSMQGKEQGMVEDTVAALDVLANYSFHLVAA 337
            LR ALLEYEV+   V++RRACV SQA++IAA SFCAKLEMMARGTL+ A      GC G +      ELA  WV  G+LL FEGLL + GKE GMVEDTV+ALD+LA+Y+  +V+A
Sbjct:  974 LRTALLEYEVLGGKVSIRRACVVSQAISIAATSFCAKLEMMARGTLDVASDRTTGGCGGYD------ELAERWVSTGFLLGFEGLLYIHGKEHGMVEDTVSALDMLADYNLKVVSA 1083
[Close]
BLAST of mRNA_S-ischiensis_contig1.133.1 vs. uniprot
Match: A0A7S3XZS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZS9_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-12
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 2 
Query:   80 VAIAAASFCAKLEMMARGTLNCAEAGCHGANKKDAAAELAGLWVRHGYLLQFEGLLSMQGKEQGMVEDTVAALDVLANYSFHLVAAD 340
            ++IA  SF  KLE++++G                    +   WV HGYLL FEGLLS  GKEQGMVEDT+AALD+L  Y F ++  D
Sbjct:    1 ISIATTSFLTKLELLSKGY---------------GQTSMVDNWVAHGYLLYFEGLLSSIGKEQGMVEDTMAALDLLTGYCFLVLQRD 72
[Close]
BLAST of mRNA_S-ischiensis_contig1.133.1 vs. uniprot
Match: A0A835ZA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA41_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.110e-10
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  173 KKDAAAELAGLWVRHGYLLQFEGLLSMQGKEQGMVEDTVAALDVLANYSFHLVAAD 340
            ++    ELA  W   GYL+ FEGLLS+QGKE GMVEDTVAA+ +L  Y+ H+ A+D
Sbjct: 1257 RRSRGEELARKWAATGYLISFEGLLSVQGKEHGMVEDTVAAMSILQTYAVHVKASD 1312
[Close]
BLAST of mRNA_S-ischiensis_contig1.133.1 vs. uniprot
Match: A0A7S1DAR0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAR0_CYCTE)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-8
Identity = 40/96 (41.67%), Postives = 50/96 (52.08%), Query Frame = 2 
Query:   53 RRACVASQAVAIAAASFCAKLEMMARGTLNCAEAGCHGANKKDAAAELAGLWVRHGYLLQFEGLLSMQGKEQGMVEDTVAALDVLANYSFHLVAAD 340
            RRA V SQA+ IA +S+   L    R                  A   A LWVRHGYLL F+GLLS  GKE GM+ED    + +L N S  LV+++
Sbjct:  140 RRASVFSQAMGIALSSYLTSLSDQTR-----------------IAQGWADLWVRHGYLLAFDGLLSAAGKELGMIEDASVGIAMLKNVSVVLVSSE 218
[Close]
BLAST of mRNA_S-ischiensis_contig1.133.1 vs. uniprot
Match: A0A7S4R3J0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R3J0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.060e-7
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 2 
Query:   44 VAVRRACVASQAVAIAAASFCAKLEMMARGTLNCAEAGCHGANKKDAAAELAGLWVRHGYLLQFEGLLSMQGKEQGMVEDTVAALDVLANYSFHLVAAD 340
            +A+RR+   SQA+ IA  S+ + L   +R                   A  A LWVRHGYL+ FEGLLS  GKE GM+ED    + +L   S  L++ D
Sbjct: 1017 IAMRRSSCFSQALGIAITSYLSSLSDASR-----------------VQAGWADLWVRHGYLITFEGLLSAAGKELGMIEDASGGIGMLKMVSVVLISDD 1098
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FU46_ECTSI1.500e-2760.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XZS9_HETAK1.120e-1244.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZA41_9STRA1.110e-1055.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1DAR0_CYCTE6.910e-841.67Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S4R3J0_9STRA9.060e-738.38Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:847906..849517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.133.1prot_S-ischiensis_contig1.133.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 847906..849517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.4808404-CDS-S-ischiensis_contig1:847905..8480341622815344.4808404-CDS-S-ischiensis_contig1:847905..848034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 847906..848034 +
1695739648.261876-CDS-S-ischiensis_contig1:847905..8480341695739648.261876-CDS-S-ischiensis_contig1:847905..848034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 847906..848034 +
1622815344.4968894-CDS-S-ischiensis_contig1:848878..8490741622815344.4968894-CDS-S-ischiensis_contig1:848878..849074Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 848879..849074 +
1695739648.2742505-CDS-S-ischiensis_contig1:848878..8490741695739648.2742505-CDS-S-ischiensis_contig1:848878..849074Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 848879..849074 +
1622815344.510162-CDS-S-ischiensis_contig1:849491..8495171622815344.510162-CDS-S-ischiensis_contig1:849491..849517Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 849492..849517 +
1695739648.2920778-CDS-S-ischiensis_contig1:849491..8495171695739648.2920778-CDS-S-ischiensis_contig1:849491..849517Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 849492..849517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.133.1

>prot_S-ischiensis_contig1.133.1 ID=prot_S-ischiensis_contig1.133.1|Name=mRNA_S-ischiensis_contig1.133.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
AEGGAVGVRGGGAGGGSEEGVRGEPGGGDRSRKLLRQAGDDGPGHPQLCG
GGLPRGQQEGRGGGAGGPLGAARLPVAVRGPAEHAGEGAGHGGGHGGRAG
RAGQLLLPPRGRRPSPA
back to top

mRNA from alignment at S-ischiensis_contig1:847906..849517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.133.1 ID=mRNA_S-ischiensis_contig1.133.1|Name=mRNA_S-ischiensis_contig1.133.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1612bp|location=Sequence derived from alignment at S-ischiensis_contig1:847906..849517+ (Schizocladia ischiensis KU_0333)
GCTGAGGGAGGCGCTGTTGGAGTACGAGGTGGTGGCGCTGGGGGTGGCAG
TGAGGAGGGCGTGCGTGGCGAGCCAGGCGGTGGCGATCGCAGCCGCAAGC
TTCTGCGCCAAGCTGGAGATGATGGCCCGGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTACGTGGTGGCGTGTTCGGGTGTGTGTGTGCGTGCGTAGG
TATGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCATGCG
TGCCGTGTGCGTGTGCATGTGCGTGTGCGCGTGGTGTGCATTTGCTGCCT
CAATTCCAGCCCGGCTTTCCGCGCCTCACCTGGCCCGGCCTGGCCCGGCC
TTTTTCCGCGCCCGACCGTCACGTGCCGCTGCGTAGCCTCCGCTCCGACG
CACTGCGCGTCCCGCCGTCGGGGGACCGGACTGGCGTAGGTGTGCAGCAG
ACACGCACCTTTTTTGTAGAAACAGCGCTTTTGTTGGCGGTTTTCCGCTT
CTTCCACGTGGACGCCCCCCTTTTCTTTTGTTTTTTTTCGGGGGAGGACA
GGACAGGACCGACCCCCCCATTCTGACGCTATTTTTCGTCGAAAGTGTCA
GGACATCTGTATCCATGGTGTTGAAAACGACAGACATGCATGGCCTCTTG
TCCCTACACGAGACTCCTTACAGCCCTGTGTAGCCCTCTCAGCCTAGGAG
ATATCTCTAGCTCCCCTCGTTACACCTTAGATATCTCTGCCATAGTCAGC
ACAGGCCCCCGAGAGGTACTTCAACAGAATGCCCTCCGCGTGCAGGGGCA
CCCTCAACTCTGCAGATGCGGGCTGCCACGGGGCCAAGAAAGAGACGCCC
CCCCCCCCTTCTTTTTTTTTTCGGGATGGTGAGCCGTGATTTTTTGGGGG
AAAAGGACAGGACAGGATCGATCCCCCCATTCTGACACGATTTTTCGTCG
AATGCTATACTCTCCGCGTGCAGGGGCACCCTCAACTGTGCGGAGGCGGG
CTGCCACGGGGCCAACAAGAAGGACGCGGCGGCGGAGCTGGCGGGCCTCT
GGGTGCGGCACGGCTACCTGTTGCAGTTCGAGGGCCTGCTGAGCATGCAG
GGGAAGGAGCAGGGCATGGTGGAGGACACGGTGGCCGCGCTGGACGTGCT
GGCCAACTACTCCTTCCACGTGAGCGTTTAACCCTTTTGCCCCTGGGGTC
CGTATAGTGATAGGGTTTTAGTGTGTAAGTCCAGTTTGGCAGGGGTAAAA
AGGTCAGGTGTAGTCACGCATGCACGCATGCACGCACGCACACGTGGTAG
AAAAAGGACAGGAGGCGTACTCGTGAGTTGCCTCCCGTAACCATGGCGAG
CTACTCCTTCCACGTGAGCGTCTACAGTAGCGTAGTCAAACGCACGCACG
CACACGTGGTAGAGAGAGGACAGGAGGTGCACTCGTACTCGTGAGTGCTG
GCCAGCTGCTCCTTCCACGTGAGCATTTAGTATAGTTACGCACGCACGCA
TGCACGCACACGTGAGCGCGCGCTCGCGCAACACTCGCACACACGCAACC
TCACACACACACACCCTCCCTCCTCTGATCCAGCAGCTCGTGGCCGCCGA
CCCAGCCCTGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:847906..849517+

>mRNA_S-ischiensis_contig1.133.1 ID=mRNA_S-ischiensis_contig1.133.1|Name=mRNA_S-ischiensis_contig1.133.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig1:847906..849517+ (Schizocladia ischiensis KU_0333)
GCTGAGGGAGGCGCTGTTGGAGTACGAGGTGGTGGCGCTGGGGGTGGCAG
TGAGGAGGGCGTGCGTGGCGAGCCAGGCGGTGGCGATCGCAGCCGCAAGC
TTCTGCGCCAAGCTGGAGATGATGGCCCGGCTGAGGGAGGCGCTGTTGGA
GTACGAGGTGGTGGCGCTGGGGGTGGCAGTGAGGAGGGCGTGCGTGGCGA
GCCAGGCGGTGGCGATCGCAGCCGCAAGCTTCTGCGCCAAGCTGGAGATG
ATGGCCCGGGGCACCCTCAACTGTGCGGAGGCGGGCTGCCACGGGGCCAA
CAAGAAGGACGCGGCGGCGGAGCTGGCGGGCCTCTGGGTGCGGCACGGCT
ACCTGTTGCAGTTCGAGGGCCTGCTGAGCATGCAGGGGAAGGAGCAGGGC
ATGGTGGAGGACACGGTGGCCGCGCTGGACGTGCTGGCCAACTACTCCTT
CCACGGGCACCCTCAACTGTGCGGAGGCGGGCTGCCACGGGGCCAACAAG
AAGGACGCGGCGGCGGAGCTGGCGGGCCTCTGGGTGCGGCACGGCTACCT
GTTGCAGTTCGAGGGCCTGCTGAGCATGCAGGGGAAGGAGCAGGGCATGG
TGGAGGACACGGTGGCCGCGCTGGACGTGCTGGCCAACTACTCCTTCCAC
CTCGTGGCCGCCGACCCAGCCCTGCCCTCGTGGCCGCCGACCCAGCCCTG
CC
back to top