mRNA_S-ischiensis_contig1.129.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.129.1
Unique NamemRNA_S-ischiensis_contig1.129.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:840728..842696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size444
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.129.1prot_S-ischiensis_contig1.129.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 840728..842696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.3221188-CDS-S-ischiensis_contig1:840727..8408861622815388.3221188-CDS-S-ischiensis_contig1:840727..840886Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 840728..840886 +
1695739675.0590234-CDS-S-ischiensis_contig1:840727..8408861695739675.0590234-CDS-S-ischiensis_contig1:840727..840886Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 840728..840886 +
1622815388.336619-CDS-S-ischiensis_contig1:841553..8416191622815388.336619-CDS-S-ischiensis_contig1:841553..841619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 841554..841619 +
1695739675.102039-CDS-S-ischiensis_contig1:841553..8416191695739675.102039-CDS-S-ischiensis_contig1:841553..841619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 841554..841619 +
1622815388.350267-CDS-S-ischiensis_contig1:842477..8426961622815388.350267-CDS-S-ischiensis_contig1:842477..842696Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 842478..842696 +
1695739675.11541-CDS-S-ischiensis_contig1:842477..8426961695739675.11541-CDS-S-ischiensis_contig1:842477..842696Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 842478..842696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.129.1

>prot_S-ischiensis_contig1.129.1 ID=prot_S-ischiensis_contig1.129.1|Name=mRNA_S-ischiensis_contig1.129.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
EGASRRKEETVHFSLPATLLASSGPRFVLRLWQGTLRSTPIATAQSSDRG
GRKVLVGSVMLTWGGLVEIPRTTSMANAFHLPLESERFPEARVVLWQLPP
TGPRLPLSLSGLGVATHARGPFNPMVSRVTFLREVSAAAGGVAAVSAS
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mRNA from alignment at S-ischiensis_contig1:840728..842696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.129.1 ID=mRNA_S-ischiensis_contig1.129.1|Name=mRNA_S-ischiensis_contig1.129.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1969bp|location=Sequence derived from alignment at S-ischiensis_contig1:840728..842696+ (Schizocladia ischiensis KU_0333)
GAAGGCGCCAGCCGCCGCAAGGAGGAGACGGTGCACTTCTCCCTTCCTGC
AACCCTGCTCGCCTCTTCCGGGCCGCGCTTTGTGCTCCGCCTGTGGCAGG
GAACCCTCCGCTCCACGCCCATCGCGACGGCTCAGTCTTCCGACCGCGGC
GGGAGGAAGGTGGGAGTGGCAGCCAGTGATGGAATATCTAAGCAAATCAA
CCTATTTATCGACAGTACTGATCTACAGTATATATCTATCGATAGTCGAT
ATTCGATATTTTGACGCGCACTAAATAGGGTGGAATCCCCATCCGCCATG
AGTACACACTAAATACAAGTGTTTAGTACGCCACCCACAAAATCAGTCGA
GCCCATCGCTATCTACTGATCGATATTCCAGCACTGGTGGCAGCCGACGA
TGCAGCTGCAACCTGCCTCCACAGACAGCGCACCCCGCCGCTGCATTGCA
GTATGTTGTTTGCGCAGCCCTCTGACAGCTGCGTCTTTTCCCCCCCGCCC
TGATGACAGCCCCCCACACGGAGGCAGCCTGCGGGGCAGAGCGCAGGTGG
CAACCGCCTCGCCCCTCTCGACTGGCCTCGAAGTGGTGCATATCTTCCCC
CCCCACCCTACGTCCAAGTATGGACTCGTACGAGTACTGTACGGCGCTGG
AGAGCCTACTCTACATCTGTACCGTGTGCAATCCAATCTGGTATCCTCTT
TGCGCTTCTGTACCGGCAGGGTCACCCGTGTGGGACGTGTGGTCAATGCC
CATATGGCTACGGCCGGCAACTCATGATTGCACCCCCTGCCCCTCACCCG
GCCTGCCCCCTTTCCCGCCCGTGCAGGTCTTGGTCGGTTCGGTGATGCTC
ACGTGGGGTGGGCTGGTGGAGATCCCGCGAACTACGTCCATGGTGAGACA
CGGGGAGAGGAAAGGGGTCGTGATTCATATAAATTGTAATGAAATATTTC
AGAAATTGTAACGAGGTACAATGGCACGTGTGTGAGATTGAGTGTTCTCG
TACTACATGTAGTGGTTATCCCATTAAAGAATCGAGTGTTCTCGTATTTG
TGTTTATCACATAAAAGAAAGAACATTTTAAGAGAGGAAGGGGGTCCCTG
TGCCGGTCTCACGCCTACTACCGCAAGCAGCTCATGAGTACCCCCTCCGT
CCAGTCACACGCACGGCAGGCCAACGCCTTCCAACTGCCGCTGGAATCCG
AGCAAACGGCTGATTTTGCTGAGAAATTGAACTAGTACATGCCCGCCGGT
CACACGCCTACCGAAAGCACTGCTTTCAAAGCAGCTCATGAGTACCCCCT
CCCGCCCCTCCGTTCGCAAGTGATGAAATATCTAAGCAAATCAACCTATT
TGTCGACCATACTGATCTATGTTGAGTGGTGGATAAGCGACGAGTTCCAG
GCCCCGTGCCAAATATCTATCTATCGATATGTAGTCGATATTCGATAGTT
TGACCCACACTAAATCCAAGTAGTTTCTTCGTAGCTAGTAGCGCCACCCA
TGAAATCAGTCGAGCCCGATAACTATCTTCTGATCGATATTCCATCACTG
CCGTTCGGTCACTCACACGGCAGGCCAACGCCTTCCACCTCCCGCTGGGA
TCCGAGTGCTTCCCCAGTAGTGTCGGACAATCTCAGATACTGGAGACCCT
ACAGTCTTGCGAGGAGTTTGAAACACGTCCCTCACACGCCTACCGAAAGC
AGCTCATGAGTACTCATACCCCCTCCGTTCTTCGGTCACTCCCATGGCAG
GCCAATGCCTTCCACCTCCCGCTGGAATCCGAGCGCTTCCCGGAGGCCCG
GGTGGTCCTCTGGCAGCTTCCCCCCACGGGTCCGCGGCTGCCTCTCTCCC
TATCGGGCCTCGGGGTGGCCACCCACGCCCGCGGGCCCTTCAACCCCATG
GTCTCCCGCGTTACCTTCCTCAGGGAGGTGTCTGCGGCCGCTGGAGGAGT
AGCTGCTGTATCTGCCTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:840728..842696+

>mRNA_S-ischiensis_contig1.129.1 ID=mRNA_S-ischiensis_contig1.129.1|Name=mRNA_S-ischiensis_contig1.129.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig1:840728..842696+ (Schizocladia ischiensis KU_0333)
GAAGGCGCCAGCCGCCGCAAGGAGGAGACGGTGCACTTCTCCCTTCCTGC
AACCCTGCTCGCCTCTTCCGGGCCGCGCTTTGTGCTCCGCCTGTGGCAGG
GAACCCTCCGCTCCACGCCCATCGCGACGGCTCAGTCTTCCGACCGCGGC
GGGAGGAAGGAAGGCGCCAGCCGCCGCAAGGAGGAGACGGTGCACTTCTC
CCTTCCTGCAACCCTGCTCGCCTCTTCCGGGCCGCGCTTTGTGCTCCGCC
TGTGGCAGGGAACCCTCCGCTCCACGCCCATCGCGACGGCTCAGTCTTCC
GACCGCGGCGGGAGGAAGGTCTTGGTCGGTTCGGTGATGCTCACGTGGGG
TGGGCTGGTGGAGATCCCGCGAACTACGTCCATGGTCTTGGTCGGTTCGG
TGATGCTCACGTGGGGTGGGCTGGTGGAGATCCCGCGAACTACGTCCATG
GCCAATGCCTTCCACCTCCCGCTGGAATCCGAGCGCTTCCCGGAGGCCCG
GGTGGTCCTCTGGCAGCTTCCCCCCACGGGTCCGCGGCTGCCTCTCTCCC
TATCGGGCCTCGGGGTGGCCACCCACGCCCGCGGGCCCTTCAACCCCATG
GTCTCCCGCGTTACCTTCCTCAGGGAGGTGTCTGCGGCCGCTGGAGGAGT
AGCTGCTGTATCTGCCTCGGCCAATGCCTTCCACCTCCCGCTGGAATCCG
AGCGCTTCCCGGAGGCCCGGGTGGTCCTCTGGCAGCTTCCCCCCACGGGT
CCGCGGCTGCCTCTCTCCCTATCGGGCCTCGGGGTGGCCACCCACGCCCG
CGGGCCCTTCAACCCCATGGTCTCCCGCGTTACCTTCCTCAGGGAGGTGT
CTGCGGCCGCTGGAGGAGTAGCTGCTGTATCTGCCTCG
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