mRNA_S-ischiensis_contig1.1214.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1214.1
Unique NamemRNA_S-ischiensis_contig1.1214.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8246750..8252479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006610.1
Exons6
Model size833
Cds size816
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.4703279-UTR-S-ischiensis_contig1:8246749..82467651622815491.4703279-UTR-S-ischiensis_contig1:8246749..8246765Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8246750..8246765 +
1695739732.4215817-UTR-S-ischiensis_contig1:8246749..82467651695739732.4215817-UTR-S-ischiensis_contig1:8246749..8246765Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8246750..8246765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.4993277-CDS-S-ischiensis_contig1:8246765..82469841622815491.4993277-CDS-S-ischiensis_contig1:8246765..8246984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8246766..8246984 +
1695739732.433944-CDS-S-ischiensis_contig1:8246765..82469841695739732.433944-CDS-S-ischiensis_contig1:8246765..8246984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8246766..8246984 +
1622815491.521103-CDS-S-ischiensis_contig1:8247648..82477621622815491.521103-CDS-S-ischiensis_contig1:8247648..8247762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8247649..8247762 +
1695739732.4500196-CDS-S-ischiensis_contig1:8247648..82477621695739732.4500196-CDS-S-ischiensis_contig1:8247648..8247762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8247649..8247762 +
1622815491.5398178-CDS-S-ischiensis_contig1:8248223..82482991622815491.5398178-CDS-S-ischiensis_contig1:8248223..8248299Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8248224..8248299 +
1695739732.462608-CDS-S-ischiensis_contig1:8248223..82482991695739732.462608-CDS-S-ischiensis_contig1:8248223..8248299Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8248224..8248299 +
1622815491.555939-CDS-S-ischiensis_contig1:8249155..82492891622815491.555939-CDS-S-ischiensis_contig1:8249155..8249289Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8249156..8249289 +
1695739732.4705918-CDS-S-ischiensis_contig1:8249155..82492891695739732.4705918-CDS-S-ischiensis_contig1:8249155..8249289Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8249156..8249289 +
1622815491.5840356-CDS-S-ischiensis_contig1:8251312..82514771622815491.5840356-CDS-S-ischiensis_contig1:8251312..8251477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8251313..8251477 +
1695739732.4790435-CDS-S-ischiensis_contig1:8251312..82514771695739732.4790435-CDS-S-ischiensis_contig1:8251312..8251477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8251313..8251477 +
1622815491.5999427-CDS-S-ischiensis_contig1:8252371..82524791622815491.5999427-CDS-S-ischiensis_contig1:8252371..8252479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8252372..8252479 +
1695739732.4884336-CDS-S-ischiensis_contig1:8252371..82524791695739732.4884336-CDS-S-ischiensis_contig1:8252371..8252479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8252372..8252479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1214.1prot_S-ischiensis_contig1.1214.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8246766..8252479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1214.1

>prot_S-ischiensis_contig1.1214.1 ID=prot_S-ischiensis_contig1.1214.1|Name=mRNA_S-ischiensis_contig1.1214.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=272bp
MALEAPDEGLPDRVQDAEPANAAAAHRPPTPGNSDAMANSDAWAPGYGRQ
IQQYHHTLAMYADRERAVQLCLKYREESQRARSRLREREHTLESLRAELE
EAGVAKRQLKELFREVLAKGRSAMEAQACQKKRFLRAQRELYASRRDVAA
LEERLEGISQSLAHTSKERDDLASVANGALQGEANARDRIKTLSKRVSGL
ERRLRMLTAADARARCAETRAAKAEEELQRNNAGLEELLGELDRRQKRIY
ELEEEAQALRTELKGEEGKEGR
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mRNA from alignment at S-ischiensis_contig1:8246750..8252479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1214.1 ID=mRNA_S-ischiensis_contig1.1214.1|Name=mRNA_S-ischiensis_contig1.1214.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5730bp|location=Sequence derived from alignment at S-ischiensis_contig1:8246750..8252479+ (Schizocladia ischiensis KU_0333)
CAGGGTTGGGGCGGAAATGGCTCTCGAAGCGCCAGACGAGGGTCTCCCTG
ATCGCGTCCAGGACGCGGAGCCGGCGAACGCCGCCGCCGCCCACCGTCCA
CCAACCCCCGGCAATAGCGATGCAATGGCCAACTCCGATGCTTGGGCCCC
CGGGTATGGACGGCAGATTCAGCAATACCACCATACCCTTGCTATGTACG
CCGACAGGGAGAGGGCCGTGCAACTCTGCTTGAAGGTGAGTGAATGGCCA
GGAACATCCAGAATTTCTTTGTCCAGCTGCCCGTATTGTTGAAGCTCACG
CGCCTTGTAGGATCAAGTTGGGATCATTGCGGACCGAGCATGCCCTCCAG
CCAAAGCGCTGGGATTGAGCACACTGCTTCAAACCCCTGTCTATGCTTAC
GAACAGGGGCAAGGTTCAGTTAAGTGGGAGCGTGGTGCATGAAAGCCTCC
CGGCCCTTACGGAGCATTTCGTTCGGATATGTGAGCACGTTGCAACCTGT
GGAGAAACCACACCGGCACTGTAGGTCCCAGCCTCGCACCACAAGGAAAT
GCCCCGTCCCCAAAGAGGGGCCTAGCGCTTGCACTATCCAGAAACAGAGC
TGTGCAGCGTTTTCGGCAGTCTTTACTTACCAGTGGTGGGCAGTTTGCGT
CATGTCGGACCATCTTCGTCGCATGACACTTGTGTAAGGAACTACTGTAC
GTCCTTGGTGTGTAGTTCCTTGGCCTCGCAAGAAGAGAATTCACGTGCTG
CTATCGTTGTACGGCAAAGGAGCAGAATAAGTGCTGACTTGGCTGGGCAT
GTAGGTACTCGAGTATAGTGCTGTTATATGCAACTTCGAGGTCCTGTACT
CGCTCTCTGTACGTGCCTAGCGTCACACTGCTGATTGCGTCGCCGCCAGT
ACCGGGAAGAAAGCCAGCGGGCGCGCTCGAGGTTACGGGAGCGTGAGCAT
ACACTGGAAAGCCTGAGAGCAGAGCTGGAGGAAGCAGGAGTCGCCAAGCG
GCAGTTGAAAGAGGTGAAGTCAGCGATAAACTAAGCAGGCCCCAGCTCTT
GCTCGACGCATCCACACGCATGTGCACACTCGGAGACAAGTGCTGCAACT
ATAAGAGACGATGCTTACAGCAGTACGAGCATGATGCTGGTGATTTCTGC
ATAGGAAGAAGAATTATTACACCAAGTCCTCAATGTGATGTGCAATATGA
TGCGGAATGAAAAATAGCGAATACTTGTACCGTGTACTCTACGTGCTGCA
TGAGTACTCAAGTACTTCCATGTGCTCTTCTCCTTAGGCACGCCATCGCC
TCTTGCGAGCTGTAGCACTGTGTCTCTCATCAAAGCTTTCCTGTCGATTT
GTGGCCCTCATGCTATAAGGTACTTGCCACAGTACCACAGACTGTTTGAC
CCCCGAATCGAGGTGGGAGCTCAGGCATTCATGTAAAGCACACGCACCGC
CCTACCTTCCCCGCCTGCGGACAGCTCTTCCGGGAGGTACTGGCCAAAGG
ACGCTCTGCAATGGAGGCCCAAGCATGTCAGAAGAAGCGCTTCTTGAGAG
GTCAGTGGCCCGTCATGACACTCAGGATTTCCCAATTCGTTGCCGTTGGC
GGCGCGAGTGCCACAGCCTTTTTTTGCAAGCACTAGCCATTGACGGGGAC
TTGGGCCGGGCCGAACGCCGTTGGGCGTGGGCCCAGACTAGGCCTTTTCT
AGGCGGCGGGGGGCGTCGGCGGGCCTGGATGGATACAATGTTTTGGGAAA
CATCTCTCCCGACCAATGCCCACCGTACTACATACAGTCTACTACGAAGC
ACGTTAGCACTGGGTGATTTGGACGTTCGCGAGACAGCTTGGCGTACATG
CAACGCTGGTGTGCACGCTTTGTGGGAATGTACTATGCACCAGCGCACAA
GTTGGACTTCGCGCGGAGACCCAAAATGGAACTTGGAAATGTTGGGAGCA
GGCCCATCGCAGAGCATGCTTGGTATGCATCCCCTCCCGAGCCCACCCAC
CCCCGGCCACGCCGGAGACACGATCCCCCTGTTGTAAGTAGTTTCACTTT
AACCGCGCAAGTCTACTGTGCATCGCCAGCACAAGCCTCTATCGTTAGCG
CTGGCCAGCGACCGCTGCCCCGACAGTGCCGCACAGTGGTTGTCGAGAGA
CTCTCTGAGCGCTGTGCCGCGAGCGAGACAAGACATGACACCGCGTGCGC
AGCTTTTGCTTCAAAAGTCCTACTGTACGTGTAAAACTGTTAGCCAACAC
GTCGCCTCCATACTATATCCGTTGCTTCTTGAAGCCCAATGAATGCATTT
TCCCGTGATGACTCCTCCCTCGGCTCGCACTCCCTTCCCGTAACTCACAT
ACCCCCCTGGCGCACTGCGGCCCTCTCTCCCCTTTGTTTTGCGCATTGGA
CGGCAGCCCAAAGGGAGTTGTACGCCAGCAGGAGGGATGTGGCGGCCCTG
GAGGAGCGCCTGGAAGGCATTTCCCAGTCTCTGGCCCACACCTCCAAGGA
GAGGGATGACCTGGCCAGCGTGGCCAACGGGGCGCTGCAGGTGAGGGGAC
TTGAGAGTGTACTGAGGGGACTGCCAGTCACACGCTACACTGAGGGGACT
GACAGTCTCATGCTGCACGATTGTACCGCTGGGGAGTGGTGTACTTCGAA
TTGCTTGGCACTTGCACGTAATGACGACGTACCATGTATACTACAGTACC
CACCACTGAACTGTACTCGAGTATTGTACTACGAAGTACAGTGCATTGTA
CGACATACTTCTACTGTTATGGCCTACCTGCCATTTTCTAGTACGCAGTA
CAGTACCGTACTTGTACTCAGTGCTTACTGGACTGTAGTGTGAGTACTCG
TACTAGCACAAGTACTTGTAAGTACATATCAAGCACTCTAGGACTTTGAT
GTATGGGTATTCCACACAAATCAAAGACAGCAACACCAGCAAACTCACAA
AACCTTGGAGATGCTTCAGTCAGCCACTGCGCAGCACCTACCTGCGTTTT
CAAGCACTGCAGAGTACACTACAGTACAGTACAGTAGTGTGTTGTCTTGC
GTACTGTGCGAGCTATTGAATGTTTCACTCACAGTACTCGTACAGGAAGT
TACTGGGTTCGGGTTACATTGCACCCCAGGACTGAATCATTTCGAAAGAC
GAGGACAAACCAGTATGTGGCACAGCGGCATACCACGGAGCACTTTAAAA
TGCTGTACTGTAGCACGTGCTATGTGGTACTACCACCTATACTTCGAAGT
ACTATGCTATGCTTGTTCGAAAACAGCACAGCAAGTACTCCTCAAGACTT
GTCATTGTACTGCACAGAGAGCACAGTTTCCACTGGTCCCATATCGCTGT
TTCCACTGGCCCCACATCAGTTTGCTGTAGTCTCACATCACAGTCTCACA
GTTTACTGTAGTCTCACATCACAGTTTACTGCAGTCTCACATCAAAGTTT
GCTGCAGTCTCACGTCACACCTACAGTAGTCTCACATCACAGTTACAGTA
CTCGTAGTCCTCACACTAGTTTCCAGCAGTCTCACATCACAGTTTACTGT
AGTCAGGGAACAAAACAGGTGCGGGCCGTGCATCTACAGACTTGACACGG
ACAAGCAGCGGCCTGAGCGGATTCTCCACCCTCGCCCTTCTTGAGCTTCA
CCCTAGGCTCGCCTTGGGTTTTTCACCAACTCGTACAGAGAGCTACCCGG
TGACCGGCCGAGCGAACCGACCGAGCACGACGCACAGGACGAGGGGGCGG
TCAGGGACCAAGCGATATGGTCATTCGGACAGGGCGGGCCACCGCCAGCC
CCGGATGCAGGCAGTCCGGGCGCCCCCCAAAGCTCGAGCCGATCCGACGG
TCCGATCCGTGGACGATCCAACACTCAGTTGGACGGTCAGTCCACATCTG
CCCGCAGACCCCGGGATAAATCAGGAAAAATCGAGCCTGTCCGGACCGGT
CGGCGATCGGCCGCCGACCGACCTCGGCAACACCCATTGAACGAGCGGCC
GCGCACGGCGGCGCGAGCGCGCGACTCGCGCCGCTTCAAATCGTGACGGA
CAGCCAGACAGACAGACGCGCCCCGATTTCGGTCCGCCTTTTACATTAAA
GGGATCTTCCGCTCGCGAGGGAAGCTAGTCTCGCATCAGTCTGTTGTAGT
CTCACAACACAGTTGATAGTAGTCTCACATCACAGTTCACAGTACAGTAG
TTTCACATCGAAGTTTACTGTAGTCTCACGGCCCCATCACCGTGCGACTA
CTCGGAAAACTTGGGTTAGCGTTAGTCCTAACTCCAACGCCACCCTAGGT
GCAGTAGGATGGTTTGCATGCCAACGGTCCGCAGCTGATGCCAGCAATAC
CCTCCAACACTTGGAATGAACTTCAACTTGTTGGGCTATGTCTCCTAAAC
ACCCGCCAACAGTCCAATGCGAGGCCTCCACGCAATTCCGACAACCCGGA
GGTGCAGCACACACAAGCAATTGACGTCCGATCCCTACATTGCTAGAGTA
GAGCTACATTACAAACTGAGCTTGCTGCACTGTATCCCAATTGTCCTCTC
TCGACACTCCAAGGGGGAGGCCAACGCCCGGGACAGGATCAAGACGCTGT
CCAAGCGGGTGTCTGGGCTGGAGAGGAGGCTGAGGATGCTCACCGCCGCA
GACGCCCGCGCTCGGTGCGCGGAGACAAGGGCCGCCAAGGCCGAGGAGGA
GCTGCAACGGAACAACGCCGGCCTTGAGGTAGGTACAATCACGAGCTTCC
CGATTTTTTTGGATTTGCAAGAATCACAAGTCAGCATCTTGAACAGTATC
GTTAACGCTAACGATACCCCTAACCTACAACTCAGGGCTTCCTGGGTATC
TGTACTTGGCCACATAGAGTACTGTACTTCGAAGTACAATAGAATTCGAC
GCCTACAGCAGTCCCTCGGAATGCTCGCAAGCACCATGGTACTGAACTGT
ACTGTGCTCCACTTGCGCGCTTTGCTGTCCTTCAGCTGGTGTGGAGGACA
ACGCCCACCTAGTGCAAGTACAGCACACTGCCGTGCAGCAGTGCTTTGCA
CATGGTGTGCACACAACTGTCGTGGTCCAAGTACTGTACAGGCACTTCAA
AACTGTACGGTACAGGTACTGTAGCCGTTATCCCGCAAGTACTAATGTAC
CACACTCAGTGGATGAAGCCTTGCTCGGCTTACACCGCGTATTCAGCCAA
TGCATACGCAAATGAAGATTGTCCCTACACTGTGTACTGTACTGCAGGCG
GGCTCAACTGGGGGACCGGTGGGCCCAGCCTGCGGCTCAGGCCAGTCAGA
GTTTTTTCTGCTGTACGTCGAAGTACATTGCTGCAACGCAGCACAGTGCT
CCTCCAGTACTACGGTAGTACTAGGGCAGTCCTACAGTAAGTACCCGGTA
CAAGTCGTACTGGAGGTAGGTGTAGATAAGGTACACTATAGTGTGGCATG
ACTTACAAGACACACTTCAAGCGCTTGTTGACATCTTCTACTACAGTACA
GTAGTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CAGCGCGTCGCACCTTTACGGATGGAATCCTGCCTGGCTTGTACTGTCCC
GGTCTGTCTTGCCACTCTACAGGAACTTCTTGGCGAGCTTGATCGTCGCC
AAAAACGAATCTATGAACTGGAGGAGGAGGCACAGGCACTGCGCACAGAG
CTGAAAGGGGAGGAAGGAAAGGAGGGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8246750..8252479+

>mRNA_S-ischiensis_contig1.1214.1 ID=mRNA_S-ischiensis_contig1.1214.1|Name=mRNA_S-ischiensis_contig1.1214.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1632bp|location=Sequence derived from alignment at S-ischiensis_contig1:8246750..8252479+ (Schizocladia ischiensis KU_0333)
ATGGCTCTCGAAGCGCCAGACGAGGGTCTCCCTGATCGCGTCCAGGACGC
GGAGCCGGCGAACGCCGCCGCCGCCCACCGTCCACCAACCCCCGGCAATA
GCGATGCAATGGCCAACTCCGATGCTTGGGCCCCCGGGTATGGACGGCAG
ATTCAGCAATACCACCATACCCTTGCTATGTACGCCGACAGGGAGAGGGC
CGTGCAACTCTGCTTGAAGATGGCTCTCGAAGCGCCAGACGAGGGTCTCC
CTGATCGCGTCCAGGACGCGGAGCCGGCGAACGCCGCCGCCGCCCACCGT
CCACCAACCCCCGGCAATAGCGATGCAATGGCCAACTCCGATGCTTGGGC
CCCCGGGTATGGACGGCAGATTCAGCAATACCACCATACCCTTGCTATGT
ACGCCGACAGGGAGAGGGCCGTGCAACTCTGCTTGAAGTACCGGGAAGAA
AGCCAGCGGGCGCGCTCGAGGTTACGGGAGCGTGAGCATACACTGGAAAG
CCTGAGAGCAGAGCTGGAGGAAGCAGGAGTCGCCAAGCGGCAGTTGAAAG
AGTACCGGGAAGAAAGCCAGCGGGCGCGCTCGAGGTTACGGGAGCGTGAG
CATACACTGGAAAGCCTGAGAGCAGAGCTGGAGGAAGCAGGAGTCGCCAA
GCGGCAGTTGAAAGAGCTCTTCCGGGAGGTACTGGCCAAAGGACGCTCTG
CAATGGAGGCCCAAGCATGTCAGAAGAAGCGCTTCTTGAGAGCTCTTCCG
GGAGGTACTGGCCAAAGGACGCTCTGCAATGGAGGCCCAAGCATGTCAGA
AGAAGCGCTTCTTGAGAGCCCAAAGGGAGTTGTACGCCAGCAGGAGGGAT
GTGGCGGCCCTGGAGGAGCGCCTGGAAGGCATTTCCCAGTCTCTGGCCCA
CACCTCCAAGGAGAGGGATGACCTGGCCAGCGTGGCCAACGGGGCGCTGC
AGCCCAAAGGGAGTTGTACGCCAGCAGGAGGGATGTGGCGGCCCTGGAGG
AGCGCCTGGAAGGCATTTCCCAGTCTCTGGCCCACACCTCCAAGGAGAGG
GATGACCTGGCCAGCGTGGCCAACGGGGCGCTGCAGGGGGAGGCCAACGC
CCGGGACAGGATCAAGACGCTGTCCAAGCGGGTGTCTGGGCTGGAGAGGA
GGCTGAGGATGCTCACCGCCGCAGACGCCCGCGCTCGGTGCGCGGAGACA
AGGGCCGCCAAGGCCGAGGAGGAGCTGCAACGGAACAACGCCGGCCTTGA
GGGGGAGGCCAACGCCCGGGACAGGATCAAGACGCTGTCCAAGCGGGTGT
CTGGGCTGGAGAGGAGGCTGAGGATGCTCACCGCCGCAGACGCCCGCGCT
CGGTGCGCGGAGACAAGGGCCGCCAAGGCCGAGGAGGAGCTGCAACGGAA
CAACGCCGGCCTTGAGGAACTTCTTGGCGAGCTTGATCGTCGCCAAAAAC
GAATCTATGAACTGGAGGAGGAGGCACAGGCACTGCGCACAGAGCTGAAA
GGGGAGGAAGGAAAGGAGGGCAGGGAACTTCTTGGCGAGCTTGATCGTCG
CCAAAAACGAATCTATGAACTGGAGGAGGAGGCACAGGCACTGCGCACAG
AGCTGAAAGGGGAGGAAGGAAAGGAGGGCAGG
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