mRNA_S-ischiensis_contig1.1211.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1211.1
Unique NamemRNA_S-ischiensis_contig1.1211.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8237225..8238440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.015461-CDS-S-ischiensis_contig1:8237224..82374961622815362.015461-CDS-S-ischiensis_contig1:8237224..8237496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8237225..8237496 -
1695739660.4267454-CDS-S-ischiensis_contig1:8237224..82374961695739660.4267454-CDS-S-ischiensis_contig1:8237224..8237496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8237225..8237496 -
1622815362.02755-CDS-S-ischiensis_contig1:8238313..82384401622815362.02755-CDS-S-ischiensis_contig1:8238313..8238440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8238314..8238440 -
1695739660.4453573-CDS-S-ischiensis_contig1:8238313..82384401695739660.4453573-CDS-S-ischiensis_contig1:8238313..8238440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8238314..8238440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1211.1prot_S-ischiensis_contig1.1211.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8237225..8238440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1211.1

>prot_S-ischiensis_contig1.1211.1 ID=prot_S-ischiensis_contig1.1211.1|Name=mRNA_S-ischiensis_contig1.1211.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
RTRERTWETGAVKAANWALLFTGTKLPVRGWALPGQAFVQGKDAFLFLRD
TELQCCTSTGVQRSTVVPRHFTLHTVHTQAPSHGHGRQAHPSHWTPRLQG
LRNVCAVLYCTVVSALSGVRCTVYTGLQCVLYV
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mRNA from alignment at S-ischiensis_contig1:8237225..8238440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1211.1 ID=mRNA_S-ischiensis_contig1.1211.1|Name=mRNA_S-ischiensis_contig1.1211.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1216bp|location=Sequence derived from alignment at S-ischiensis_contig1:8237225..8238440- (Schizocladia ischiensis KU_0333)
CGCACACGAGAGCGCACTTGGGAGACAGGTGCTGTCAAAGCGGCCAACTG
GGCCTTGCTTTTCACTGGCACCAAGCTGCCGGTCAGAGGCTGGGCCCTTC
CTGGACAGGCGTTTGTACAGGGGAAAGGTGACCGTGCTTGGAAGTGTGCA
CTTGCTTGCTCCTTTGGCACATGTACAACGGTAGTAGTAGCAATAATGTA
CATATACTGCACTCACCGTACATTTGTATGGCTAATATCCAAGTATCTAC
TCGAGTACAGTACATAAGTCTCACTACACATGTACATACCTCGTACGTAC
GCTGGGTACAGTATTTGCAAGTGTACCAGAGTACAGTAGTTGCAAGTGCT
AAAGTAGGACTAGAGTACAGTACAGTAGTACTGTCTGTACTGATGGACTG
TGGGGGAACTTCAGAGTCTCAAGTGGAGTATGACACTGTGCTGTGGCCAA
TTGCTTGCAGTGGCTGCAGCGCTTGTATACATCGACATATGCTTCTGCCC
CGATATACTGGACTGCAGTAGTGCTAGTAGGTACTTCCGCAATGCTTTGC
AATGCCCACTCTGCAACAGTACGCTAGCATAGTATGCTTACATAGTACGC
AAGCAAGTGCTGTATATGTACCTCTTCGTACTTTGAAGCGCTACCGTAAG
TGTAGCTGACTTAATCTTACTCGTACTGTACAACCATGTAAAAGTGCTAC
GAGTGCATCCTCTTTAGCTCAAGAACAGCAGTGCGCCTGCATGTTGGACA
TCATCATCATGGTTCTCACCCCCCCCATGGCGCTCGCCATGTTGGTAGAT
TAAAACCTGCAGCAGCGCAATGCCCCTGCGTGCACATTTCTATACCTACA
GTTGTGGTCCTCACCCCCCCCCTCCCGCCCTCCCCCACACTGCCCATCCC
ATCGGGCCCCATCCGTATGTCCTTTGTTGTTCCGCCATTTTCAGATGCCT
TCCTCTTCCTGAGGGACACTGAACTACAGTGCTGCACGAGTACAGGAGTG
CAGCGCAGTACAGTGGTACCACGACACTTTACACTGCACACTGTACACAC
TCAAGCGCCGAGTCATGGACATGGAAGGCAGGCCCATCCAAGTCACTGGA
CTCCACGCTTGCAAGGTCTGAGGAATGTCTGCGCTGTACTGTACTGTACT
GTAGTCAGCGCGCTGTCCGGCGTACGGTGCACCGTGTACACTGGACTGCA
ATGTGTGCTGTACGTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8237225..8238440-

>mRNA_S-ischiensis_contig1.1211.1 ID=mRNA_S-ischiensis_contig1.1211.1|Name=mRNA_S-ischiensis_contig1.1211.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig1:8237225..8238440- (Schizocladia ischiensis KU_0333)
CGCACACGAGAGCGCACTTGGGAGACAGGTGCTGTCAAAGCGGCCAACTG
GGCCTTGCTTTTCACTGGCACCAAGCTGCCGGTCAGAGGCTGGGCCCTTC
CTGGACAGGCGTTTGTACAGGGGAAAGCGCACACGAGAGCGCACTTGGGA
GACAGGTGCTGTCAAAGCGGCCAACTGGGCCTTGCTTTTCACTGGCACCA
AGCTGCCGGTCAGAGGCTGGGCCCTTCCTGGACAGGCGTTTGTACAGGGG
AAAGATGCCTTCCTCTTCCTGAGGGACACTGAACTACAGTGCTGCACGAG
TACAGGAGTGCAGCGCAGTACAGTGGTACCACGACACTTTACACTGCACA
CTGTACACACTCAAGCGCCGAGTCATGGACATGGAAGGCAGGCCCATCCA
AGTCACTGGACTCCACGCTTGCAAGGTCTGAGGAATGTCTGCGCTGTACT
GTACTGTACTGTAGTCAGCGCGCTGTCCGGCGTACGGTGCACCGTGTACA
CTGGACTGCAATGTGTGCTGTACGTAATGCCTTCCTCTTCCTGAGGGACA
CTGAACTACAGTGCTGCACGAGTACAGGAGTGCAGCGCAGTACAGTGGTA
CCACGACACTTTACACTGCACACTGTACACACTCAAGCGCCGAGTCATGG
ACATGGAAGGCAGGCCCATCCAAGTCACTGGACTCCACGCTTGCAAGGTC
TGAGGAATGTCTGCGCTGTACTGTACTGTACTGTAGTCAGCGCGCTGTCC
GGCGTACGGTGCACCGTGTACACTGGACTGCAATGTGTGCTGTACGTA
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