mRNA_S-ischiensis_contig1.1204.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1204.1
Unique NamemRNA_S-ischiensis_contig1.1204.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: D8LT98_ECTSI (Conserved C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT98_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 6.590e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 1 
Query:  172 WAELRAKIDVGEYQRGLQAAHESVQIGHETLEGLADQQERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLPTSHFRRADRDASSSAAPPGPGRGVAGAPNRDRGLSAAAAAADDGPVSGFICPDCRQKMGSAEALMTHYRSAH 633
            WA++R  IDV E +RGL++A+ESV++G E LE L DQ+ERLERSEM+LDST+Y +++SAR+LRGM+FWG+++N FSDDP++P        + A S+ A  G   G  G  N D           D P  GFICPDCR    +++ L+ HY SAH
Sbjct:   80 WAQVRDSIDVTERRRGLRSAYESVEVGREALERLDDQKERLERSEMVLDSTRYAIERSARILRGMTFWGKIRNAFSDDPQVP-------QQPAGSTRA--GTATGDGGNGNDD----------PDTPAEGFICPDCRGLFPTSDVLVAHYGSAH 214
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: A0A6H5JRH3_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH3_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 9.190e-34
Identity = 77/168 (45.83%), Postives = 105/168 (62.50%), Query Frame = 1 
Query:  172 WAELRAKIDVGEYQRGLQAAHESVQIGHETLEGLADQQERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLPTSHFRRADRDASSSAAPPGPGRGVAGAPNRDRGLSAAAAAADDGPVSGFICPDCRQKMGSAEALMTHYRSAHEEPRTPPAPKGRGW 675
            WA++R  IDV E +RGL++AHESV++G E LE L DQ+ERLERSEM+LDST+Y +++SARVLRGM+FWG+++N FS+DP++P        + A ++ A    G G  G  N D           D P  GFICPDCR    +++AL+ H+  AH           RGW
Sbjct:   80 WAQVRDSIDVTERRRGLRSAHESVEVGREALERLDDQKERLERSEMVLDSTRYAIERSARVLRGMTFWGKIRNAFSNDPEVP-------QQPAGNTRAGTATGNGGNG--NYD----------PDVPAEGFICPDCRGLFPTSDALVAHHGLAHTIASADDDEDARGW 228
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: A0A835YH57_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH57_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.040e-16
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:  286 ERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLPTSHFRRADRDASSSAAPPGPGRGVAGAPNRDRGLSAAAAAADDGPVSGFICPDCRQKMGSAEALMTHYRSAHE 636
            E L+RS M++DSTQY++DKSARV+RGM+ WGR+QN+FSD+P    +         SSSA                              + G+ICP+CR +  SA+ L+ H+ S HE
Sbjct:   53 ESLQRSAMVVDSTQYLLDKSARVIRGMTMWGRMQNFFSDEPAPVLAASTPISNSTSSSAG-----------------------------MEGYICPECRMRCASADDLLAHFASLHE 140
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: A0A4D9CSU3_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSU3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.090e-15
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:  178 ELRAKIDVGEYQRGLQAAHESVQIGHETLEGLADQQERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLP 417
            + ++K ++  Y   L+ AHESV IG ETL  +A QQE L+RSE ++DS  YV+ KSAR LRGM++WG ++NYFS++P+ P
Sbjct:   51 QFKSKDELDAY---LRVAHESVAIGRETLTAVAGQQEALDRSEAVVDSNLYVIKKSARTLRGMTWWGSLRNYFSEEPEAP 127
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: A0A7S2BIZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BIZ0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.980e-7
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:  187 AKIDVGEYQRG--LQAAHESVQIGHETLEGLADQQERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLPTSHFRRADRDASSSA 462
            A+++  E +R   LQ A +++  G+ T+  LADQQE L+R+E+I +S +Y++ KS R LRGM++ G V N  S +P+ P     R   D+  +A
Sbjct:   58 AEVEKWERERNQALQEADQALSTGNATMGTLADQQETLDRAELIAESNEYMLAKSRRTLRGMTWSGWVANMVSSEPEAPRGARERRAGDSRPNA 151
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: A0A7S4E636_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E636_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.180e-7
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  217 GLQAAHESVQIGHETLEGLADQQERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLP 417
            GL A  E++Q G  TL+ L +Q E+L ++E++ DS +Y++D+SAR +RGM++ G +QN F+  P +P
Sbjct:   14 GLAALDEALQAGAATLQRLEEQGEQLHQTEIVADSNKYLLDRSAREIRGMTWGGWLQNQFTSGPAVP 80
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BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Match: K3WBG5_GLOUD (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBG5_GLOUD)

HSP 1 Score: 54.7 bits (130), Expect = 4.130e-5
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  214 RGLQAAHESVQIGHETLEGLADQQERLERSEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLPTSHFRRAD 441
            + L+A  ES+QI  ET   L+ Q E+L+RS+   + TQY VD S RVLRGM++ G + N  S  P+     ++ A+
Sbjct:   30 QSLRAVAESLQIARETAHTLSMQSEQLDRSKRAAEDTQYAVDLSKRVLRGMTWSGWLYNAMSSVPQQVADRYKPAN 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LT98_ECTSI6.590e-3548.70Conserved C2H2 zinc finger protein n=1 Tax=Ectocar... [more]
A0A6H5JRH3_9PHAE9.190e-3445.83t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835YH57_9STRA6.040e-1638.46C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CSU3_9STRA7.090e-1551.25t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2BIZ0_9STRA3.980e-738.30Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4E636_9STRA6.180e-743.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K3WBG5_GLOUD4.130e-540.79t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8142975..8144650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue4.3e-31
Seed eggNOG ortholog2880.D8LT98
EggNOG free text desc.zinc finger
EggNOG OGs28M8X@1,2QTS4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-12_005750.1
Exons3
Model size721
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1204.1prot_S-ischiensis_contig1.1204.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8142975..8144648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.611048-CDS-S-ischiensis_contig1:8142974..81432601622815490.611048-CDS-S-ischiensis_contig1:8142974..8143260Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8142975..8143260 +
1695739731.88888-CDS-S-ischiensis_contig1:8142974..81432601695739731.88888-CDS-S-ischiensis_contig1:8142974..8143260Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8142975..8143260 +
1622815490.6216362-CDS-S-ischiensis_contig1:8143602..81437271622815490.6216362-CDS-S-ischiensis_contig1:8143602..8143727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8143603..8143727 +
1695739731.8983455-CDS-S-ischiensis_contig1:8143602..81437271695739731.8983455-CDS-S-ischiensis_contig1:8143602..8143727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8143603..8143727 +
1622815490.6339288-CDS-S-ischiensis_contig1:8144342..81446481622815490.6339288-CDS-S-ischiensis_contig1:8144342..8144648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8144343..8144648 +
1695739731.906402-CDS-S-ischiensis_contig1:8144342..81446481695739731.906402-CDS-S-ischiensis_contig1:8144342..8144648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8144343..8144648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1204.1

>prot_S-ischiensis_contig1.1204.1 ID=prot_S-ischiensis_contig1.1204.1|Name=mRNA_S-ischiensis_contig1.1204.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=239bp
QLRRRKNGPPRNGMSEEDRAELFARPTTPARHESDGSPRSDQGESKSGTN
SGKAATSWAELRAKIDVGEYQRGLQAAHESVQIGHETLEGLADQQERLER
SEMILDSTQYVVDKSARVLRGMSFWGRVQNYFSDDPKLPTSHFRRADRDA
SSSAAPPGPGRGVAGAPNRDRGLSAAAAAADDGPVSGFICPDCRQKMGSA
EALMTHYRSAHEEPRTPPAPKGRGWEEAADAAAARASPP
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mRNA from alignment at S-ischiensis_contig1:8142975..8144650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1204.1 ID=mRNA_S-ischiensis_contig1.1204.1|Name=mRNA_S-ischiensis_contig1.1204.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1676bp|location=Sequence derived from alignment at S-ischiensis_contig1:8142975..8144650+ (Schizocladia ischiensis KU_0333)
CAGCTCCGGCGTCGCAAGAACGGACCACCGCGCAACGGCATGTCCGAGGA
GGACCGCGCTGAACTCTTCGCAAGGCCGACTACTCCTGCACGGCATGAAT
CTGACGGCAGTCCCCGGAGCGATCAGGGGGAGAGCAAATCAGGCACGAAT
TCTGGCAAGGCTGCCACGTCGTGGGCAGAGCTTCGGGCCAAAATTGACGT
CGGGGAGTATCAGCGCGGCCTCCAGGCTGCGCACGAGTCCGTGCAAATAG
GTCACGAAACACTGGAAGGCCTTGCGGACCAGCAGGGTGAGCTATGACTC
CCACGTATCGCGCACTGGTGGGTGCCCGTTTCAAACGATGTGATCTGCAC
GCCATTCCATGGCAGTGCTGCCAGACCGCGCGACGACCGGGTTACTTTGC
AGTTCAGGGCAGCGCCGGAGAGACAGGGCAGAATGAACCGCCCAAGAACT
TTTCGTTTAGACAAGAACGTATTGCTTGTTTGCTTTCGTCGCCTTCCAGG
CAGTTCCACCACTCTGCCCCTTTCGCGCGGGGGGTAACCCGCTCACCTCG
TCCTGCCACCACCGCCACTGCCTTTCATCCTCCTCCCCTCTTGTGGACAT
ACGCTGATGTACATATCTCTACGAGCAGAGCGCCTGGAGCGTTCCGAGAT
GATCCTGGACTCCACCCAGTACGTCGTGGACAAAAGTGCACGTGTGTTGA
GGGGCATGAGCTTCTGGGGGAGGGTGCAAAACTACTTCTCAGATGATCCA
AAGGTTCGTCCATTGCTTTCGGCGTCTATTTTTTTTGGATGAGGCAATTG
AGGCTTCTGAGGCTTCTCTGCTGTATGCTGTTCACCATGGGCGGCGGGCG
GTTGCGTACATTATCCCCGCCTGTCTGTTTTGGTGTTGTGTCTGACTGTC
CATCTGTCTGTCTCCCGGTCTCTCCTTTCCCCTCCCTCCTCTCTCACTCT
TTCTCTGCTCTTCCTTACCTCCTTTCCTCCCTCCCTCGCTGTTCTATTTC
CCTCTCTCTCTCGCCCCTCTTTCCCTATATCTCTCCCTTCTCCCGTGTGT
GGTGCGTGTCATGTGTCCTGTGTTGTGAGTGCTCACGCCCGTTCTTCCGC
GTGAAACCTTGCCTACTAAGTGAGTGCTGCACTTGCGGGACCACCTCTAG
CAGGGCCCCACCTTTTGACCGACGCCCAGCCTCAGCCTGCAGAATGACCC
CTCAAATCAAGCAACCCTCCGGCAAGAGTCTCAGCACCTCCCTACGAGTC
CCTGGCATGGCTATGGCCCGGCTCTCCCTGTCCTCCCCCATGCTTGTTGC
CCTCCCTAAATCCACTTCTTCCATACGCCCTCCCCCACCACCCACACGGC
TCCCCCGTCCCTCCACAGCTCCCGACATCGCACTTTCGCAGGGCCGACAG
AGACGCCTCCTCTTCCGCCGCGCCCCCCGGGCCCGGGCGCGGGGTGGCAG
GTGCCCCGAATCGTGACCGAGGCCTCTCTGCCGCGGCGGCGGCTGCCGAC
GACGGCCCCGTGTCCGGGTTCATATGCCCAGATTGCCGCCAGAAAATGGG
GTCGGCGGAAGCCCTCATGACCCATTATAGATCCGCCCACGAGGAACCCC
GAACACCGCCCGCGCCGAAGGGGAGGGGCTGGGAGGAGGCAGCCGACGCA
GCAGCCGCACGAGCCTCCCCTCCTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8142975..8144650+

>mRNA_S-ischiensis_contig1.1204.1 ID=mRNA_S-ischiensis_contig1.1204.1|Name=mRNA_S-ischiensis_contig1.1204.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1434bp|location=Sequence derived from alignment at S-ischiensis_contig1:8142975..8144650+ (Schizocladia ischiensis KU_0333)
CAGCTCCGGCGTCGCAAGAACGGACCACCGCGCAACGGCATGTCCGAGGA
GGACCGCGCTGAACTCTTCGCAAGGCCGACTACTCCTGCACGGCATGAAT
CTGACGGCAGTCCCCGGAGCGATCAGGGGGAGAGCAAATCAGGCACGAAT
TCTGGCAAGGCTGCCACGTCGTGGGCAGAGCTTCGGGCCAAAATTGACGT
CGGGGAGTATCAGCGCGGCCTCCAGGCTGCGCACGAGTCCGTGCAAATAG
GTCACGAAACACTGGAAGGCCTTGCGGACCAGCAGGCAGCTCCGGCGTCG
CAAGAACGGACCACCGCGCAACGGCATGTCCGAGGAGGACCGCGCTGAAC
TCTTCGCAAGGCCGACTACTCCTGCACGGCATGAATCTGACGGCAGTCCC
CGGAGCGATCAGGGGGAGAGCAAATCAGGCACGAATTCTGGCAAGGCTGC
CACGTCGTGGGCAGAGCTTCGGGCCAAAATTGACGTCGGGGAGTATCAGC
GCGGCCTCCAGGCTGCGCACGAGTCCGTGCAAATAGGTCACGAAACACTG
GAAGGCCTTGCGGACCAGCAGGAGCGCCTGGAGCGTTCCGAGATGATCCT
GGACTCCACCCAGTACGTCGTGGACAAAAGTGCACGTGTGTTGAGGGGCA
TGAGCTTCTGGGGGAGGGTGCAAAACTACTTCTCAGATGATCCAAAGAGC
GCCTGGAGCGTTCCGAGATGATCCTGGACTCCACCCAGTACGTCGTGGAC
AAAAGTGCACGTGTGTTGAGGGGCATGAGCTTCTGGGGGAGGGTGCAAAA
CTACTTCTCAGATGATCCAAAGCTCCCGACATCGCACTTTCGCAGGGCCG
ACAGAGACGCCTCCTCTTCCGCCGCGCCCCCCGGGCCCGGGCGCGGGGTG
GCAGGTGCCCCGAATCGTGACCGAGGCCTCTCTGCCGCGGCGGCGGCTGC
CGACGACGGCCCCGTGTCCGGGTTCATATGCCCAGATTGCCGCCAGAAAA
TGGGGTCGGCGGAAGCCCTCATGACCCATTATAGATCCGCCCACGAGGAA
CCCCGAACACCGCCCGCGCCGAAGGGGAGGGGCTGGGAGGAGGCAGCCGA
CGCAGCAGCCGCACGAGCCTCCCCTCCTCTCCCGACATCGCACTTTCGCA
GGGCCGACAGAGACGCCTCCTCTTCCGCCGCGCCCCCCGGGCCCGGGCGC
GGGGTGGCAGGTGCCCCGAATCGTGACCGAGGCCTCTCTGCCGCGGCGGC
GGCTGCCGACGACGGCCCCGTGTCCGGGTTCATATGCCCAGATTGCCGCC
AGAAAATGGGGTCGGCGGAAGCCCTCATGACCCATTATAGATCCGCCCAC
GAGGAACCCCGAACACCGCCCGCGCCGAAGGGGAGGGGCTGGGAGGAGGC
AGCCGACGCAGCAGCCGCACGAGCCTCCCCTCCT
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