mRNA_S-ischiensis_contig1.1192.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1192.1
Unique NamemRNA_S-ischiensis_contig1.1192.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1192.1 vs. uniprot
Match: A0A836CHM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 8.360e-38
Identity = 103/244 (42.21%), Postives = 131/244 (53.69%), Query Frame = -2 
Query:  271 MSLAVLSRHRGEGD-----TPRLLSVKGVVFDATGDTSFGDGAPFEMLLGHEASRVLAMGPDATPTADLDAGLHDLTFDHHRQLEARFAGLAGTLTAVARLASDDHARIFGGPPFFTRSGXXXXXXXXXXXXAIDASGPGASLGVPPGPD-LHGLVERGDVEALVMALATPEGAAAVDAPCPRTGMTPLCKAVEGGELAVARALLGAGADRSARAALYDGDNALGLALRLKRPELEKLLVGWQA 984
            MSLA L  H GEG       PRL+SVKG ++D T   +F    P   ++GHEASRVLA G       DLD  L  ++FD HR+LE     +    TAVARLA+ D+  IFGG  F T                +D  G GA        D LH L+ + DV+ +   L   E A +++  C RTG++PL KAVE G   + + LL AGADRSA AALYDGD  L LA RL+R ++ + L G  A
Sbjct:    1 MSLAALRVHAGEGGGQAPGMPRLVSVKGRIYDVTSAAAFASDKPLARIVGHEASRVLATG--VLQDEDLDRSLEGISFDDHRRLEKLSNEMEAAFTAVARLAAADYRAIFGG--FST----------------LDGGGGGAXXXXXXXXDGLHALIAQQDVDGVRQRLQ--EDAGSINRACSRTGLSPLHKAVEEGSTDIVQVLLAAGADRSAHAALYDGDTPLQLARRLRRDDIAQALEGAAA 222
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BLAST of mRNA_S-ischiensis_contig1.1192.1 vs. uniprot
Match: D8LRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP3_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.600e-20
Identity = 90/259 (34.75%), Postives = 118/259 (45.56%), Query Frame = -2 
Query:  313 MSLAVLSRHRGEGDTPRLLSVKGVVFDATGDTSFGDGAPFEMLLGHEASRVLAMGPDATPT-----ADLDAGLHDLTFDHHRQLEARFAGLAGTLTAVARLASDDHARIFGGPPFFTR-SGXXXXXXXXXXXXAIDASGPGASLGVPPGPDLHGLVERGDVEALVMALAT----------------PEGAAA-------------VDAPCPRTGMTPLCKAVEGGELAVARALLGAGADRSARAALYDGDNALGLALRL 984
            M LAVL+ H      P L+SVKG+VFD + D ++          GH+ASRV+     +          LDAGL  L ++ H++LEA F  LA +  AVA L  +D+  IFG P   +  +G            AI+         V     LH  VE+GD EA+   L++                 +G +A             VD+ CPRTGM+PL KAVEGG               SA+AALYDGD AL LA RL
Sbjct:    1 MPLAVLAGH------PTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIGASAGSRRGYGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLTDEDYISIFGTPLVASGDTGYTPAAATTASALAINTQTNNVKALVAV---LHASVEQGDAEAVRNVLSSRYQQPPGEEVEDAGGDADGDSAQIEETQPKSLLVPVDSACPRTGMSPLLKAVEGG---------------SAKAALYDGDTALDLARRL 235
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CHM5_9STRA8.360e-3842.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LRP3_ECTSI1.600e-2034.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8060336..8061473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1138
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1192.1prot_S-ischiensis_contig1.1192.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8060508..8061089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.1342344-UTR-S-ischiensis_contig1:8060335..80605071622815378.1342344-UTR-S-ischiensis_contig1:8060335..8060507Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8060336..8060507 +
1695739665.961696-UTR-S-ischiensis_contig1:8060335..80605071695739665.961696-UTR-S-ischiensis_contig1:8060335..8060507Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8060336..8060507 +
1622815378.1623065-UTR-S-ischiensis_contig1:8061089..80614731622815378.1623065-UTR-S-ischiensis_contig1:8061089..8061473Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8061090..8061473 +
1695739665.9854913-UTR-S-ischiensis_contig1:8061089..80614731695739665.9854913-UTR-S-ischiensis_contig1:8061089..8061473Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8061090..8061473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.1483822-CDS-S-ischiensis_contig1:8060507..80610891622815378.1483822-CDS-S-ischiensis_contig1:8060507..8061089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8060508..8061089 +
1695739665.972746-CDS-S-ischiensis_contig1:8060507..80610891695739665.972746-CDS-S-ischiensis_contig1:8060507..8061089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8060508..8061089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1192.1

>prot_S-ischiensis_contig1.1192.1 ID=prot_S-ischiensis_contig1.1192.1|Name=mRNA_S-ischiensis_contig1.1192.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp
MQCRWLPLPKYCSTAHTTQAQQVGHDSQAAGPGACQPTSSFSSSGLFSRS
ARPRALSPSYRAARADRSAPAPSKARATASSPPSTALHSGVIPVRGQGAS
TAAAPSGVARAMTKASTSPRSTKPCRSGPGGTPRDAPGPLASIAAAAAPL
PPPPPAPLRVKKGGPPKMRAWSSLAKRATAVKVPARPANRASS*
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mRNA from alignment at S-ischiensis_contig1:8060336..8061473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1192.1 ID=mRNA_S-ischiensis_contig1.1192.1|Name=mRNA_S-ischiensis_contig1.1192.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1138bp|location=Sequence derived from alignment at S-ischiensis_contig1:8060336..8061473+ (Schizocladia ischiensis KU_0333)
GTTTGGGAGGTGCTCGCACTTAATGTTTTTGTAATTCACAGGGCCTCAGC
TACCAGAGTGGCATCAACACTCTGTAACACCGTACACATGCAGATGCTGA
ACTTTCCAAGTACATGTACTGCAGCACTTGTTAGCTAAGTATCACTTGGC
TGACGTGAGTACTATCTAGCACATGCAATGCAGATGGTTGCCATTACCTA
AGTACTGCAGCACTGCACATACCACGCAAGCACAGCAAGTGGGTCATGAC
AGCCAAGCGGCTGGCCCGGGGGCCTGCCAGCCCACCAGCAGCTTCTCAAG
CTCAGGCCTCTTCAGCCGCAGCGCCAGGCCCAGGGCGTTGTCCCCGTCAT
ACAGGGCTGCCCGTGCCGACCGATCCGCGCCCGCTCCCAGCAAAGCCCGT
GCCACGGCCAGCTCCCCACCCTCCACGGCTTTGCACAGTGGGGTCATACC
GGTACGGGGGCAAGGGGCATCCACGGCCGCTGCGCCTTCCGGGGTTGCCA
GGGCCATGACCAAGGCCTCAACGTCACCACGTTCCACCAAGCCGTGCAGA
TCTGGGCCCGGCGGGACCCCCAGGGATGCCCCAGGGCCGCTTGCGTCGAT
TGCTGCTGCGGCGGCGCCGTTGCCGCCTCCGCCCCCTGCGCCGCTCCGCG
TGAAGAAGGGGGGCCCTCCGAAAATGCGCGCGTGGTCGTCGCTTGCTAAA
CGGGCCACCGCAGTCAAAGTACCAGCCAGGCCGGCAAACCGCGCCTCCAG
CTGACGGTGATGATCAAACGTCAGATCGTGGAGGCCGGCGTCCAGATCAG
CCGTTGGCGTGGCGTCCGGTCCCATGGCCAGCACCCGGCTGGCTTCGTGC
CCCAGGAGCATCTCGAAGGGGGCTCCGTCGCCGAAGCTGGTGTCGCCTGT
CGCATCAAAGACGACACCTTTGACGGACAAGAGGCGTGGCGTGTCACCTT
CACCTCGGTGCCGAGAAAGGACAGCCAAACTCATTTCAGGAAGATCTGCA
AATCCCCCCGGCTTCCCGTCCGAGGCACCAGACCCGGCGCCGAAGCCCAG
AGGGCACGAGCCCTGTCCCCGGCCAAATCCCAGCGGGCATCCTGACATAT
TGTTTGCGGGGTTGCTACTAGCACAATATACGCCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8060336..8061473+

>mRNA_S-ischiensis_contig1.1192.1 ID=mRNA_S-ischiensis_contig1.1192.1|Name=mRNA_S-ischiensis_contig1.1192.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig1:8060336..8061473+ (Schizocladia ischiensis KU_0333)
ATGCAATGCAGATGGTTGCCATTACCTAAGTACTGCAGCACTGCACATAC
CACGCAAGCACAGCAAGTGGGTCATGACAGCCAAGCGGCTGGCCCGGGGG
CCTGCCAGCCCACCAGCAGCTTCTCAAGCTCAGGCCTCTTCAGCCGCAGC
GCCAGGCCCAGGGCGTTGTCCCCGTCATACAGGGCTGCCCGTGCCGACCG
ATCCGCGCCCGCTCCCAGCAAAGCCCGTGCCACGGCCAGCTCCCCACCCT
CCACGGCTTTGCACAGTGGGGTCATACCGGTACGGGGGCAAGGGGCATCC
ACGGCCGCTGCGCCTTCCGGGGTTGCCAGGGCCATGACCAAGGCCTCAAC
GTCACCACGTTCCACCAAGCCGTGCAGATCTGGGCCCGGCGGGACCCCCA
GGGATGCCCCAGGGCCGCTTGCGTCGATTGCTGCTGCGGCGGCGCCGTTG
CCGCCTCCGCCCCCTGCGCCGCTCCGCGTGAAGAAGGGGGGCCCTCCGAA
AATGCGCGCGTGGTCGTCGCTTGCTAAACGGGCCACCGCAGTCAAAGTAC
CAGCCAGGCCGGCAAACCGCGCCTCCAGCTGAATGCAATGCAGATGGTTG
CCATTACCTAAGTACTGCAGCACTGCACATACCACGCAAGCACAGCAAGT
GGGTCATGACAGCCAAGCGGCTGGCCCGGGGGCCTGCCAGCCCACCAGCA
GCTTCTCAAGCTCAGGCCTCTTCAGCCGCAGCGCCAGGCCCAGGGCGTTG
TCCCCGTCATACAGGGCTGCCCGTGCCGACCGATCCGCGCCCGCTCCCAG
CAAAGCCCGTGCCACGGCCAGCTCCCCACCCTCCACGGCTTTGCACAGTG
GGGTCATACCGGTACGGGGGCAAGGGGCATCCACGGCCGCTGCGCCTTCC
GGGGTTGCCAGGGCCATGACCAAGGCCTCAACGTCACCACGTTCCACCAA
GCCGTGCAGATCTGGGCCCGGCGGGACCCCCAGGGATGCCCCAGGGCCGC
TTGCGTCGATTGCTGCTGCGGCGGCGCCGTTGCCGCCTCCGCCCCCTGCG
CCGCTCCGCGTGAAGAAGGGGGGCCCTCCGAAAATGCGCGCGTGGTCGTC
GCTTGCTAAACGGGCCACCGCAGTCAAAGTACCAGCCAGGCCGGCAAACC
GCGCCTCCAGCTGA
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