mRNA_S-ischiensis_contig1.1189.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1189.1
Unique NamemRNA_S-ischiensis_contig1.1189.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8019675..8024305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-07_000960.1
Exons6
Model size1395
Cds size1395
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1189.1prot_S-ischiensis_contig1.1189.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8019675..8024305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.5400207-CDS-S-ischiensis_contig1:8019674..80201121622815361.5400207-CDS-S-ischiensis_contig1:8019674..8020112Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8019675..8020112 +
1695739660.108538-CDS-S-ischiensis_contig1:8019674..80201121695739660.108538-CDS-S-ischiensis_contig1:8019674..8020112Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8019675..8020112 +
1622815361.5502744-CDS-S-ischiensis_contig1:8021294..80213711622815361.5502744-CDS-S-ischiensis_contig1:8021294..8021371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8021295..8021371 +
1695739660.1169407-CDS-S-ischiensis_contig1:8021294..80213711695739660.1169407-CDS-S-ischiensis_contig1:8021294..8021371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8021295..8021371 +
1622815361.5612628-CDS-S-ischiensis_contig1:8021560..80216481622815361.5612628-CDS-S-ischiensis_contig1:8021560..8021648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8021561..8021648 +
1695739660.1270003-CDS-S-ischiensis_contig1:8021560..80216481695739660.1270003-CDS-S-ischiensis_contig1:8021560..8021648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8021561..8021648 +
1622815361.5737953-CDS-S-ischiensis_contig1:8022118..80223011622815361.5737953-CDS-S-ischiensis_contig1:8022118..8022301Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8022119..8022301 +
1695739660.1352038-CDS-S-ischiensis_contig1:8022118..80223011695739660.1352038-CDS-S-ischiensis_contig1:8022118..8022301Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8022119..8022301 +
1622815361.585935-CDS-S-ischiensis_contig1:8022708..80228061622815361.585935-CDS-S-ischiensis_contig1:8022708..8022806Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8022709..8022806 +
1695739660.1492257-CDS-S-ischiensis_contig1:8022708..80228061695739660.1492257-CDS-S-ischiensis_contig1:8022708..8022806Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8022709..8022806 +
1622815361.596425-CDS-S-ischiensis_contig1:8023794..80243051622815361.596425-CDS-S-ischiensis_contig1:8023794..8024305Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8023795..8024305 +
1695739660.1592226-CDS-S-ischiensis_contig1:8023794..80243051695739660.1592226-CDS-S-ischiensis_contig1:8023794..8024305Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8023795..8024305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1189.1

>prot_S-ischiensis_contig1.1189.1 ID=prot_S-ischiensis_contig1.1189.1|Name=mRNA_S-ischiensis_contig1.1189.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=465bp
VGCAPVPACTPAAGNDVYRATVDRNSIVRGGSSSGGGGGGSWSTPAAANK
HGCSGEDCGSGGGGGGGGALEEAGRRGGDVKQGNAEGKKMAGTGKDCRMG
EDLLTAALQSLLGELRLAQGETDAAMDQHLAALQTRVTWLGRNHPQVADS
LERLAHASAQDPEPGNVEQLLRRAVEVWTACLGSAHQGLGRPLRRLAAAL
QEAGAAPEDQSEAGVGGEDLTPRRLEEAFTLYQKDITLLEAHLGPGHPLE
AQAIARAATVAEELEDFERAEALRRRVLGMLEAWWGAGHPQVSESLHALG
WVLWARGNLSEAEEVLRRAISLQMGPAPPRALSCQPCRAASPLPARPSVP
PSTATAAAAAAATETTHPSPHTTPPPPPPLLAPQPPAKTEVANARALAAL
AWVVGERGRLGEAEDMLWQALHVSSPTAKSTVAVQAAAAAQAEGKAGAVR
APDGAMHWGREAGAE
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mRNA from alignment at S-ischiensis_contig1:8019675..8024305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1189.1 ID=mRNA_S-ischiensis_contig1.1189.1|Name=mRNA_S-ischiensis_contig1.1189.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4631bp|location=Sequence derived from alignment at S-ischiensis_contig1:8019675..8024305+ (Schizocladia ischiensis KU_0333)
GTCGGGTGTGCCCCTGTCCCTGCCTGCACCCCCGCCGCCGGCAATGACGT
CTACCGCGCCACAGTGGACCGGAACAGCATTGTAAGAGGAGGTAGCAGCA
GCGGTGGCGGCGGTGGTGGCAGCTGGAGCACCCCCGCGGCTGCCAACAAA
CATGGTTGCTCTGGCGAAGACTGTGGCAGCGGCGGTGGCGGGGGGGGTGG
AGGTGCACTCGAAGAGGCAGGCCGGAGAGGCGGTGATGTAAAGCAAGGTA
ACGCAGAGGGTAAGAAGATGGCAGGCACAGGAAAGGACTGCCGCATGGGA
GAGGACCTGCTCACTGCCGCGTTGCAATCGCTGCTGGGGGAGCTGCGGCT
GGCGCAGGGGGAGACGGATGCCGCCATGGACCAGCATCTGGCGGCGCTGC
AGACGCGAGTGACCTGGCTGGGGAGGAACCACCCACAGGTGACGCTTGTT
GTTACCAGTAGGTGAAAGTGGGAAGGACCTCACGGGAATGCCCTTGCCCC
CCAGCGAGTAGTGGGTGTGTACTGTATGTTTTACTCAAACGACCTTCAGG
CAAGGTGCAAGGCGTCAGTGCATGTATTTGTCACTCATGTCGGACAGGAT
TGCTATCACACCCCGTCCTGTGACAAGTCCTGCCATTGGCCGCCGGCCCG
GTATAGTACTTGCTGGACCGCTGGCCAGCCCCCGCGGGGTAGTTCTTCCG
GCCATTGGCCTCGCGTCCCTACTATGCCGGGATGGTTTTCTCCCGCCAAA
GTGTAGGTAGAGTGGTTGATTCCTGCAGTTAAAACTTACTTGTTAACAAG
TACTTGTACAACGAAGTACCAAGTAGCTGCAGAAGTGGTGCAAATGTACT
AGTCTGGTGCGTTCAATGAGTGCGTTCACAGACTGTACCAATGTGTACTC
ACATCTAGCAGAGTCCCGAGGCCATTGCTTTCCCCAAGTACCCAAGTAGT
TAAGGAGAACGAGTTTCAAATAACCCAAGTGGTTCGGGGGACTATGAAAG
TACTACAGTAGGTACGTATGTACATGTACTCACATCTAACAGAGCTTGCC
GTAGTCCCGAGACCATTGACCACGCGCCGTTGGCAACGGAACATTCTCTC
TCCCGCCCCTGGAAAGCCAGGGTGGGAGGGAGGCACTTTGTACGCTACTT
CGTAAGCTACTTGCACTACTAAAGCACTCGAGATTGCGATATGAACGCAA
CAGCACTCTTCAGTGTCCATATACGCCGTGTCACTACTATAGTACTTCGA
AGTAGTAGCCAAGTACTCAAGTAGGTCGTAAGAAAAATCACCACGGCACT
CAGTCAACACTGCTGTGGCGTGCATGGACACGTGTGACGCGGTACGTATA
CCCCCGACAACCCCGGCACCCCTACTGCTCTGTCCTGTATTGCACCCGCT
ACTACGCTGTGCTGTGTCGCACGCACCTGCCATTGCATTCCCTGTATTGC
GCCAGCAGCCGCACCGTATATGCTACTTCGTACTATACTGCACCTGCTAA
TGCACGATATTGCTGTATTTCGCCTGCTATTGCATTCTACTGTGCAAGTG
CTGATCATGGTGATATTGCTGTGTTTCGCCTGCCACTGCATTCTCCTGTG
CGGCATTGCACCTGCTGCAGGTAGCAGACAGCCTTGAGCGCCTGGCGCAC
GCCTCCGCCCAGGACCCAGAACCCGGGAATGTGGAGCAGCTGCTCAGGTG
TGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTGCGCCCGG
GGCCAGTGTTTGCGGCCGCTTGAGTTGAGGTCCTCCACACCCCCACCCCC
TCCCTCTCACCTTCCCTCTCCTGCCTTCCCTCCCTCTTCCGCTCGCCGGT
CTTGCGTCGGCGGATGCGTTTTCCCCGGCATGTCAGGAGAGCCGTGGAGG
TGTGGACAGCGTGCCTGGGCTCAGCACATCAGGGCCTGGGGCGCCCCCTG
CGTCGACTTGCGGCAGCCCTACAGGTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGT
GTGTGTTTGTGAATGTGCTTTAAGTATGGCCCCTACAGTAATAATATCCT
ACTCGTACGAGTACTGCTTCAGTATGTACTCGTACGAGTACTACTCTACT
GTGCTACACATACCTGCTCCGTCTTGTTCGGCACACACTCACACACACAT
GCTCACAGAGTGGACAATCACAATGCCGTGTACGAGTCTCATGTGCTTGG
AAGTACTTGTCGGTACCAAGTACTTCGAAGTATGCCGCAGTCAATGCCGC
CGACCTCCCGGACGAGAGACCATTAACATGATGATGATCATCATCATCAT
CACGAAGTGACCATTATCATCATCATCATCATCATCGTCACCATCACATC
CGACTCACCTCCTTGAACACTCCGCCTGCTCGGTGGACACGTAGGAGGCC
GGGGCCGCGCCTGAAGACCAATCAGAGGCAGGCGTTGGCGGGGAGGACCT
GACCCCGCGTCGCCTGGAGGAGGCCTTCACGCTGTACCAGAAGGACATCA
CCCTTCTGGAGGCACACCTGGGCCCGGGACACCCACTGGAGGCACAGGCT
ATCGCTCGGGCAGCCACCGTGGCAGAGGTGTGCGTGGCTTGCGTGCTGCC
GTGTGCTTTGTGTTGTGCGTTGCTCCGCTATCTTGTCGCGTGCGAGTGCG
AGTACAATAGCAGTACAGTAGGTTTCACTGCGGTATTGCACATGCATTAC
ACCGGAAAAAACCAACGACTGTACTTCCAAGTACTATCTTCTACTCGCGT
GCCACTGTACAGTCGTGTACTGTACAATTTTGCTGTGCTGTATGTAGTGG
TCTCGGGACTACGGCAAGCTCTGTTAGGTGTGAGTACAGCAGAAGTACGC
ACATACTTCGGAAGTACTTTGTATATATGTATACATGTACGTACTTCGGA
AGAGGTAACAAAGAAGGGCACACTGTACAATACGGCTGCACTGTACTGTA
CAGTAATATGACTGTATACCTACGCTCTGCACAGGAGCTGGAGGACTTTG
AGCGGGCGGAGGCGCTGCGGCGGAGGGTGCTTGGCATGCTTGAGGCCTGG
TGGGGGGCGGGCCACCCGCAGGTCAGCGAGAGGTGAGTCAGCCGCGGATC
GGTTTTCAGAACAGTACACGACAGGCACTGTGCCGCACTGCACTGCACTG
TACTATACTGTACTGTACTGTATTGTCTGCACTGTAGTACATCCAAGTAC
TGGCTTCCCGGTACTCGGCAGGCACTTAAACGGTACTAAGTACTTGGAAG
TACTTGACAGGCACTTACAGCAGCTGAGCAACTGGCGTGTCATTCGTGCG
GGAATGTCGGAGCCCTGGTGTCAGCGAGTCTTCTGACAGAACCGCCCGCA
GAGGAGCATTGCCGTACGCACGTGCTCACAGCCTTCCTGACAAACAGCCA
TCCTCGCTGCCCACAACCTCCATGTGGAGTTCCCTTTGCTTCATGGTACC
CCCCCCCGGGAACGAGGAGAGGTTGGCTGTACATTGTAGCCAGCCTCCCC
AACAACAGACGGCACAGTGCTCCGTCCCGTAGGTTCACCCCTGTGATGTT
GATGTGATTTGATGTGATGTGATGTCAAACTGCGGCACTTTAGAGTGCAT
GTCACATCACATCACATCACATCATTTCACACCACATCCCGTAGGGTCAC
CTCTGTGGGACGCAGGGGTCGTCAATGGCCATATGGCTCCGGCAGGCAAC
TCATGAGTACCGCAACACCCCCCCCCCAGTCACTCTCTCCACTCACCCTG
CACTGCCTGCAGCACCGCGCGGCCGGCCATGGCAAACACAAAGAGCCACT
TTCCCTCTGTCCTCCACCCCTGGTCGAGGGGACGTGTGCTCGACACTTGC
GGCTCTTCTGAGCGAGCACATGATATCATGATACCATACTAGTATGAGTA
CACACCCAACTACTACTACTACTACTACGATACAATTGTACTCCAAGTAG
CGTCCACACACTGTGGCGAGCAACTTGCCCATAACTTCAAAGATGCAACT
CACGAGTGACCGTTCCTCTCCTTCCTCCCCCCCCGTCACCGCCACCACCC
CCGGCCACCCCCCCCTGCAGCCTGCACGCCCTGGGCTGGGTGCTCTGGGC
TAGGGGAAACCTTTCCGAGGCCGAGGAGGTCCTCCGGCGGGCCATCTCCC
TGCAGATGGGCCCCGCACCGCCCAGAGCTTTGTCCTGCCAGCCCTGTCGT
GCCGCCTCCCCCCTGCCGGCCCGCCCAAGCGTTCCTCCCTCCACTGCCAC
CGCCGCCGCCGCCGCCGCCGCCACCGAAACGACCCATCCCTCCCCGCACA
CAACGCCGCCGCCGCCGCCGCCTCTCCTGGCACCGCAACCGCCCGCAAAG
ACGGAGGTGGCGAACGCGCGCGCCCTGGCGGCGCTGGCATGGGTGGTGGG
GGAGCGCGGCCGTCTGGGGGAGGCGGAAGACATGCTCTGGCAGGCCCTCC
ACGTGTCATCCCCCACAGCCAAGTCCACGGTGGCAGTTCAGGCTGCAGCG
GCGGCGCAGGCAGAGGGCAAGGCCGGGGCGGTGAGGGCGCCAGACGGCGC
TATGCACTGGGGCAGGGAAGCGGGGGCGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8019675..8024305+

>mRNA_S-ischiensis_contig1.1189.1 ID=mRNA_S-ischiensis_contig1.1189.1|Name=mRNA_S-ischiensis_contig1.1189.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2790bp|location=Sequence derived from alignment at S-ischiensis_contig1:8019675..8024305+ (Schizocladia ischiensis KU_0333)
GTCGGGTGTGCCCCTGTCCCTGCCTGCACCCCCGCCGCCGGCAATGACGT
CTACCGCGCCACAGTGGACCGGAACAGCATTGTAAGAGGAGGTAGCAGCA
GCGGTGGCGGCGGTGGTGGCAGCTGGAGCACCCCCGCGGCTGCCAACAAA
CATGGTTGCTCTGGCGAAGACTGTGGCAGCGGCGGTGGCGGGGGGGGTGG
AGGTGCACTCGAAGAGGCAGGCCGGAGAGGCGGTGATGTAAAGCAAGGTA
ACGCAGAGGGTAAGAAGATGGCAGGCACAGGAAAGGACTGCCGCATGGGA
GAGGACCTGCTCACTGCCGCGTTGCAATCGCTGCTGGGGGAGCTGCGGCT
GGCGCAGGGGGAGACGGATGCCGCCATGGACCAGCATCTGGCGGCGCTGC
AGACGCGAGTGACCTGGCTGGGGAGGAACCACCCACAGGTCGGGTGTGCC
CCTGTCCCTGCCTGCACCCCCGCCGCCGGCAATGACGTCTACCGCGCCAC
AGTGGACCGGAACAGCATTGTAAGAGGAGGTAGCAGCAGCGGTGGCGGCG
GTGGTGGCAGCTGGAGCACCCCCGCGGCTGCCAACAAACATGGTTGCTCT
GGCGAAGACTGTGGCAGCGGCGGTGGCGGGGGGGGTGGAGGTGCACTCGA
AGAGGCAGGCCGGAGAGGCGGTGATGTAAAGCAAGGTAACGCAGAGGGTA
AGAAGATGGCAGGCACAGGAAAGGACTGCCGCATGGGAGAGGACCTGCTC
ACTGCCGCGTTGCAATCGCTGCTGGGGGAGCTGCGGCTGGCGCAGGGGGA
GACGGATGCCGCCATGGACCAGCATCTGGCGGCGCTGCAGACGCGAGTGA
CCTGGCTGGGGAGGAACCACCCACAGGTAGCAGACAGCCTTGAGCGCCTG
GCGCACGCCTCCGCCCAGGACCCAGAACCCGGGAATGTGGAGCAGCTGCT
CAGGTAGCAGACAGCCTTGAGCGCCTGGCGCACGCCTCCGCCCAGGACCC
AGAACCCGGGAATGTGGAGCAGCTGCTCAGGAGAGCCGTGGAGGTGTGGA
CAGCGTGCCTGGGCTCAGCACATCAGGGCCTGGGGCGCCCCCTGCGTCGA
CTTGCGGCAGCCCTACAGGAGAGCCGTGGAGGTGTGGACAGCGTGCCTGG
GCTCAGCACATCAGGGCCTGGGGCGCCCCCTGCGTCGACTTGCGGCAGCC
CTACAGGAGGCCGGGGCCGCGCCTGAAGACCAATCAGAGGCAGGCGTTGG
CGGGGAGGACCTGACCCCGCGTCGCCTGGAGGAGGCCTTCACGCTGTACC
AGAAGGACATCACCCTTCTGGAGGCACACCTGGGCCCGGGACACCCACTG
GAGGCACAGGCTATCGCTCGGGCAGCCACCGTGGCAGAGGAGGCCGGGGC
CGCGCCTGAAGACCAATCAGAGGCAGGCGTTGGCGGGGAGGACCTGACCC
CGCGTCGCCTGGAGGAGGCCTTCACGCTGTACCAGAAGGACATCACCCTT
CTGGAGGCACACCTGGGCCCGGGACACCCACTGGAGGCACAGGCTATCGC
TCGGGCAGCCACCGTGGCAGAGGAGCTGGAGGACTTTGAGCGGGCGGAGG
CGCTGCGGCGGAGGGTGCTTGGCATGCTTGAGGCCTGGTGGGGGGCGGGC
CACCCGCAGGTCAGCGAGAGGAGCTGGAGGACTTTGAGCGGGCGGAGGCG
CTGCGGCGGAGGGTGCTTGGCATGCTTGAGGCCTGGTGGGGGGCGGGCCA
CCCGCAGGTCAGCGAGAGCCTGCACGCCCTGGGCTGGGTGCTCTGGGCTA
GGGGAAACCTTTCCGAGGCCGAGGAGGTCCTCCGGCGGGCCATCTCCCTG
CAGATGGGCCCCGCACCGCCCAGAGCTTTGTCCTGCCAGCCCTGTCGTGC
CGCCTCCCCCCTGCCGGCCCGCCCAAGCGTTCCTCCCTCCACTGCCACCG
CCGCCGCCGCCGCCGCCGCCACCGAAACGACCCATCCCTCCCCGCACACA
ACGCCGCCGCCGCCGCCGCCTCTCCTGGCACCGCAACCGCCCGCAAAGAC
GGAGGTGGCGAACGCGCGCGCCCTGGCGGCGCTGGCATGGGTGGTGGGGG
AGCGCGGCCGTCTGGGGGAGGCGGAAGACATGCTCTGGCAGGCCCTCCAC
GTGTCATCCCCCACAGCCAAGTCCACGGTGGCAGTTCAGGCTGCAGCGGC
GGCGCAGGCAGAGGGCAAGGCCGGGGCGGTGAGGGCGCCAGACGGCGCTA
TGCACTGGGGCAGGGAAGCGGGGGCGGAGCCTGCACGCCCTGGGCTGGGT
GCTCTGGGCTAGGGGAAACCTTTCCGAGGCCGAGGAGGTCCTCCGGCGGG
CCATCTCCCTGCAGATGGGCCCCGCACCGCCCAGAGCTTTGTCCTGCCAG
CCCTGTCGTGCCGCCTCCCCCCTGCCGGCCCGCCCAAGCGTTCCTCCCTC
CACTGCCACCGCCGCCGCCGCCGCCGCCGCCACCGAAACGACCCATCCCT
CCCCGCACACAACGCCGCCGCCGCCGCCGCCTCTCCTGGCACCGCAACCG
CCCGCAAAGACGGAGGTGGCGAACGCGCGCGCCCTGGCGGCGCTGGCATG
GGTGGTGGGGGAGCGCGGCCGTCTGGGGGAGGCGGAAGACATGCTCTGGC
AGGCCCTCCACGTGTCATCCCCCACAGCCAAGTCCACGGTGGCAGTTCAG
GCTGCAGCGGCGGCGCAGGCAGAGGGCAAGGCCGGGGCGGTGAGGGCGCC
AGACGGCGCTATGCACTGGGGCAGGGAAGCGGGGGCGGAG
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