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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 846 |
| Cds size | 495 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815361.4789958-UTR-S-ischiensis_contig1:8016034..8016384 | 1622815361.4789958-UTR-S-ischiensis_contig1:8016034..8016384 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 8016035..8016384 + |
| 1695739660.0797322-UTR-S-ischiensis_contig1:8016034..8016384 | 1695739660.0797322-UTR-S-ischiensis_contig1:8016034..8016384 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 8016035..8016384 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815361.4899719-CDS-S-ischiensis_contig1:8016384..8016420 | 1622815361.4899719-CDS-S-ischiensis_contig1:8016384..8016420 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 8016385..8016420 + |
| 1695739660.0896225-CDS-S-ischiensis_contig1:8016384..8016420 | 1695739660.0896225-CDS-S-ischiensis_contig1:8016384..8016420 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 8016385..8016420 + |
| 1622815361.50705-CDS-S-ischiensis_contig1:8017093..8017552 | 1622815361.50705-CDS-S-ischiensis_contig1:8017093..8017552 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 8017094..8017552 + |
| 1695739660.0996366-CDS-S-ischiensis_contig1:8017093..8017552 | 1695739660.0996366-CDS-S-ischiensis_contig1:8017093..8017552 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 8017094..8017552 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1187.1 >prot_S-ischiensis_contig1.1187.1 ID=prot_S-ischiensis_contig1.1187.1|Name=mRNA_S-ischiensis_contig1.1187.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
MLRRFSGLQESQHLPAEASGVAQECGSLPLALAMAASLPVVRRTSSPEAW
AGLAVLLGHTKKRFTSSEAKHGGNNGDGYDTGACSGNGPSDFSLGGGSAG
GGGGGGGGSGGHNDGSSDGGNGSGDGGNSNTDGVNNSDGSGGDGGGGPSV
HVKADLVQEEEGQDT back to topmRNA from alignment at S-ischiensis_contig1:8016035..8017552+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig1.1187.1 ID=mRNA_S-ischiensis_contig1.1187.1|Name=mRNA_S-ischiensis_contig1.1187.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1518bp|location=Sequence derived from alignment at S-ischiensis_contig1:8016035..8017552+ (Schizocladia ischiensis KU_0333)
TGTTCGGACGAGCCTCCAGCGTCACGAGAGGGCCGCCCCTTCCCCACCCA
ACCCTTCAACAAACTCCGGGGTGTCCTTTCGCTTGGTGCGAATCTTGGAA
GCACTACTCGTACAAGTAGCGCAAGCGGGCTGCCCGCCGCGCCGTGCTGC
CTGTCCTGTCTGGGTTGCCCCCTCCCCCCCAAAAAACGCATGAAAAGGTG
CTGGAGGCGTTGCAGTCGCTGGGCTGCCACGTCCTCGCCACGACACGCAC
CCCCACCCTCCTGGAGCAAGCACGGCAAGCCGGCTGGTGGGGCGGCGGTG
GCCCAACGGTCGTGGAAGTTGGGCCGCTGAGCTCAGCCGAGGCGGAGGAC
ATGCTCCGGCGGTTCAGTGGGCTGCAGGAGAGCCAGGTTAGTGTGTCTCA
TGTGCGGCAGACCCCAGGGAGAGAAACGGGCACCCTACCGCACCCACTCA
ACCCATGGCCCGCGCACCCTTGTCACTTGCGGCCTGCTTGCATGTGTATG
TGTGTGTGTGTGCGCGCGCGTGGGCGCGTGGTGTTTTGTACACGTACTTG
AAATGCAAATGTTGTAGAGCATTGTACTGTACATTGCTGCGAGTACCAGC
ACGCCTGTCCATGTCTATATGTTTGTGCGTGCATGGAACTCGGGCGCGCG
CGCCAGTTTGTTCGCCCACGCCCACGCAGACCCGCATGTACATGCGGTGT
GAGTGCACAGGCACATGCGCACACCTTTGCAAGCACTCTACAGCTCTAGC
TCCACCGCCTGGTCCTCTGCCATGCGGTCCCGTTCAACTAAGATTTTTTT
TGTTCTTCCTCCTTCTCAACAAGTCACGCTCCCTCCCTCTCAAACCTCCC
TCGGCCGGTGCGTCTGTCCCTCCCTCCATCCCCCACCCCACTCCCCCTCC
TGTGCACTTGCGGGCACCCACGGTCCGTTGGACGACCCCCATCCCTCCTC
CCCCCCCGGCGACGTGGCTGTATCTTCTCGGTCACGTTCACCCCAACCAA
CCCGACACACCCACGGGCCATCGATCGATCGCCACTGCATCCTCTGCCCC
CCCCGCCAGCACCTTCCTGCCGAGGCTAGTGGTGTTGCCCAGGAATGTGG
GTCTCTGCCCCTGGCGCTGGCCATGGCGGCATCACTGCCCGTCGTGCGAC
GAACGTCCAGCCCGGAGGCGTGGGCAGGGCTGGCGGTCCTGCTGGGGCAC
ACCAAGAAACGCTTCACCAGCAGCGAGGCCAAGCATGGCGGCAACAATGG
CGACGGTTACGACACGGGTGCCTGCAGTGGAAACGGCCCCAGTGACTTCA
GCCTTGGTGGGGGTAGTGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGC
GGTGGCCATAACGATGGCAGTAGTGACGGTGGCAATGGCAGCGGCGACGG
CGGCAACAGCAACACCGACGGCGTCAACAACAGCGACGGTAGTGGTGGTG
ACGGTGGTGGTGGCCCCTCTGTCCATGTCAAGGCGGACCTGGTGCAGGAG
GAGGAGGGGCAGGACACG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig1:8016035..8017552+ >mRNA_S-ischiensis_contig1.1187.1 ID=mRNA_S-ischiensis_contig1.1187.1|Name=mRNA_S-ischiensis_contig1.1187.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig1:8016035..8017552+ (Schizocladia ischiensis KU_0333)
ATGCTCCGGCGGTTCAGTGGGCTGCAGGAGAGCCAGATGCTCCGGCGGTT
CAGTGGGCTGCAGGAGAGCCAGCACCTTCCTGCCGAGGCTAGTGGTGTTG
CCCAGGAATGTGGGTCTCTGCCCCTGGCGCTGGCCATGGCGGCATCACTG
CCCGTCGTGCGACGAACGTCCAGCCCGGAGGCGTGGGCAGGGCTGGCGGT
CCTGCTGGGGCACACCAAGAAACGCTTCACCAGCAGCGAGGCCAAGCATG
GCGGCAACAATGGCGACGGTTACGACACGGGTGCCTGCAGTGGAAACGGC
CCCAGTGACTTCAGCCTTGGTGGGGGTAGTGCCGGCGGCGGCGGCGGCGG
CGGCGGCGGCAGCGGTGGCCATAACGATGGCAGTAGTGACGGTGGCAATG
GCAGCGGCGACGGCGGCAACAGCAACACCGACGGCGTCAACAACAGCGAC
GGTAGTGGTGGTGACGGTGGTGGTGGCCCCTCTGTCCATGTCAAGGCGGA
CCTGGTGCAGGAGGAGGAGGGGCAGGACACGCACCTTCCTGCCGAGGCTA
GTGGTGTTGCCCAGGAATGTGGGTCTCTGCCCCTGGCGCTGGCCATGGCG
GCATCACTGCCCGTCGTGCGACGAACGTCCAGCCCGGAGGCGTGGGCAGG
GCTGGCGGTCCTGCTGGGGCACACCAAGAAACGCTTCACCAGCAGCGAGG
CCAAGCATGGCGGCAACAATGGCGACGGTTACGACACGGGTGCCTGCAGT
GGAAACGGCCCCAGTGACTTCAGCCTTGGTGGGGGTAGTGCCGGCGGCGG
CGGCGGCGGCGGCGGCGGCAGCGGTGGCCATAACGATGGCAGTAGTGACG
GTGGCAATGGCAGCGGCGACGGCGGCAACAGCAACACCGACGGCGTCAAC
AACAGCGACGGTAGTGGTGGTGACGGTGGTGGTGGCCCCTCTGTCCATGT
CAAGGCGGACCTGGTGCAGGAGGAGGAGGGGCAGGACACG back to top
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