mRNA_S-ischiensis_contig1.1180.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: D7FX94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX94_ECTSI) HSP 1 Score: 272 bits (696), Expect = 1.740e-82 Identity = 150/270 (55.56%), Postives = 197/270 (72.96%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQDGEFLVPLSDERLVAVRQSIRIHRDALDNNFLTTVQAWMDKS-RQGGLDGMITILQKVLQIYAAEAVL-------QRGGAGDEGKAQGKTDTPANALLDELLTTDADNWAPLLVQKLHGG----GPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIIDKVAPDTPEG 1001
M+ +I ++ AP+ + L L VSK V+ VAQPAFFLRLAEL++ A+D ++ +L+ LA V VL+RL+EFAE+KMDDSSSL+QIVV++AAE++GEFLVPLS+ERL A+RQS++IHRD LDNNFL TVQAWM+KS ++ + GM+ ILQK+LQ+YA++ +L G AG+ A K TPA LL+E+L DAD W +L G G VTKDGL+GA+QVA+E V+L QE+GSMAQRVQAEFLSEL I+ P+ P G
Sbjct: 7 MDTIINDLKEAPDVEVLTLKVSKCVQQVAQPAFFLRLAELAETAEDEQQRVKLENLATQVTSVLERLVEFAEEKMDDSSSLLQIVVTSAAEKNGEFLVPLSEERLTALRQSMKIHRDQLDNNFLATVQAWMEKSGKEEEMQGMVVILQKILQMYASQEILLGSAEPSATGEAGEADAAAPKKRTPAQLLLEEILNMDADKWDGVLAGLSAVGRGMTGGVTKDGLLGAIQVAVERVILQQENGSMAQRVQAEFLSELCKRIEAACPEQPLG 276
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A6S9G5L4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9G5L4_HETAK) HSP 1 Score: 194 bits (494), Expect = 6.770e-53 Identity = 110/258 (42.64%), Postives = 168/258 (65.12%), Query Frame = 3
Query: 210 RMSADAMEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQDGEFLVPLSDERLVAVRQSIRIHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYAAEAVLQRGGAGDEGKAQGKTDTPANA-LLDELLTTDADNWAPLLVQKLHGGGPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIIDKV 980
RMS ++ + I A +EL I++K +K VA P+FF+ +A+ +D+A E+ L +LA ++LQ L++ AE +MD + +V+ +V +AAE DG+FLVPLS ER A++ + + LD+NFL+TV WM K+ + +DGM+ ILQ+VLQ+YAA A L+ G EG+A PA++ L D+LL +D + W L+ + L + D LMGA+QVAIE+VV+ QE+GSM+QRVQAEFL EL+ ++ ++
Sbjct: 48 RMSTNSDYEYIIDAMRAAKPEELPGIIAKEIKKVASPSFFMAIADRADKASSDAERDALGRLATEATEILQELLKVAEGQMDQAGKVVEAIVVSAAEPDGQFLVPLSAERKTAMKMVLERFAEELDDNFLSTVSTWMKKAEEDKMDGMVGILQRVLQLYAANA-LKLGAPRREGEA------PASSQLFDDLLDSDPELWRGLVRKGLVEERRCSADDLMGAIQVAIESVVMQQENGSMSQRVQAEFLGELIELVKEI 298
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A6U6C7N1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6C7N1_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.720e-50 Identity = 121/269 (44.98%), Postives = 163/269 (60.59%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQD-GEFLVPLSDERLVAVRQSI-RIHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYA------AEAVLQRG-GAGDEGKAQGKTDT-----------PANALLDELLTTDADNWAPLLVQKLHGGGPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIID 974
M+++ITK+ AP EL VSK+++ V+ P FF+R+AE +DQ D + K +L LA+ V L+ ++ E ++D+ + V+ VV AAE D GEFLVPLS ER A+R ++ ++ +LD FL+TV AWM+KS + G+DGM+ ILQKVLQIYA A A LQ GA G++QGK D PA A L++L+ D D W L + V LMG VQ IE VVL E+GSMAQRVQAEFL ELVS ++
Sbjct: 91 MDEMITKLAGAPAY-ELPQAVSKAIRVVSSPRFFMRIAERADQTSDEIMKAKLGALAENVVATLEAVVSTTEDRLDERAKEVEDVVKAAAEPDSGEFLVPLSAERTEAMRAALAKLDSGSLDEGFLSTVDAWMNKSHEDGMDGMVGILQKVLQIYAGTEIKRARAALQANVGAAVSGQSQGKADEVLAETEMEGIKPAAAFLEDLMNMDTDMWDSALAKSFSDEDGVGPKALMGEVQRTIEGVVLGLENGSMAQRVQAEFLRELVSRVE 358
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A7S2AZA7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZA7_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.180e-50 Identity = 106/231 (45.89%), Postives = 156/231 (67.53%), Query Frame = 3
Query: 303 KTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQDGEFLVPLSDERLVAVRQSIRIHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYAAEAVLQRGGAGDEGKAQGKTDTPANALLDELLTTDADNWAPLLVQKLHGGGPV-TKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIIDKVAPDT 992
KTV+ P FF+R+AELSD A+ EK L LA + + L+ +++ E+K+D +S+L+Q +++ AAE DGEF+VPL+ + A+R+++ +R +LD++FL+TVQAWM K GL+GM+TILQ+VLQ+YA+ ++ A D A + + A ALLD++ T +D W LL + L G PV + + L+ VQ IETVVLAQE+GS +QRVQAEFL EL I ++A T
Sbjct: 1 KTVSSPTFFVRIAELSDAAKSEDEKMALSSLATNLVNTLEVIVQRTEEKVDGASTLLQEILAVAAEDDGEFMVPLAPAKAAALREAVLENRASLDDSFLSTVQAWMRKCTDNGLEGMVTILQQVLQLYASSMLI----ADDSVNADSEAASSA-ALLDKVFATSSDGWDALLRESLLGDSPVCSSELLLAEVQARIETVVLAQEAGSYSQRVQAEFLRELSQRIQQLAGST 226
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A7S1ZNW5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZNW5_TRICV) HSP 1 Score: 188 bits (478), Expect = 8.320e-50 Identity = 121/272 (44.49%), Postives = 168/272 (61.76%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQD-GEFLVPLSDERLVAVRQSIR-IHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYA------AEAVLQRG-GAGDEGKAQGKTDT-----------PANALLDELLTTDADNWAPLLVQKLHGG---GPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIID 974
M+ +ITK+ +A EL VSK+++ V+ P FFLR+AE +D D +EK +L L++ + L+ ++ E ++D+ + +V+ VV AAE D GEFLVPLS ER+ A+R+++ I LD FL+TV AWM+KS Q G+DGM+ ILQKVLQ+YA A A LQ GA G++QG+ D PA ALL+ L+ TD D+W L + L G V+ +MG VQ IE VVL E+GSMAQRVQAE+L ELV+ I+
Sbjct: 99 MDDMITKLSNA-KPYELPQAVSKAIRVVSSPRFFLRIAERADMTDDALEKAKLASLSENLVTTLEAVVSTTEDRLDERAEMVESVVKAAAEPDSGEFLVPLSAERVAAMREALADIESPDLDEGFLSTVDAWMNKSHQDGMDGMVAILQKVLQLYAGVEIKRARARLQASVGAAVSGQSQGQADEVVAEQEKGETPPAAALLERLMDTDPDSWDAELRRSLAAEQEEGGVSSQAIMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVTRIE 369
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A6T8FN14_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8FN14_9STRA) HSP 1 Score: 184 bits (467), Expect = 6.910e-49 Identity = 108/252 (42.86%), Postives = 159/252 (63.10%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQ-DGEFLVPLSDERLVAVRQSI-RIHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYAAEAVLQRGGAGDEGKAQGKTDTPANALLDELLTTDADNWAPLLVQKLHGGGPV-TKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIID 974
++ +ITK+ +AP+ EL +VSK+++ V+ P FFLR+AE +D A EK +L +LA + L+ ++ EK +DD++ V+ +V AAE GEFLVPL ER+ ++R+ + +I LD FLTT+ +WM+KS Q G+DGM+ ILQKVLQIYA + + GD +PA L +ELL D DNW L K+ G + + + LM +Q IE+VVL E+GSMAQRVQAE+L EL++ ++
Sbjct: 72 IDDMITKLLAAPSH-ELPRVVSKAIRVVSSPRFFLRIAERTDMATSDAEKDKLSELAGNLVSTLEAVVSTTEKVLDDTALDVENIVKAAAEPLSGEFLVPLLPERIASMREVMDQIESPRLDEGFLTTIDSWMNKSGQDGMDGMVVILQKVLQIYAGTVITRARNTGD-------APSPAAVLFEELLNMDTDNWDFQLRNKIGEGEELLSSEALMAEIQRTIESVVLGLENGSMAQRVQAEYLRELITRVE 315
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A7S4UFJ3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UFJ3_9STRA) HSP 1 Score: 184 bits (466), Expect = 2.410e-48 Identity = 116/271 (42.80%), Postives = 166/271 (61.25%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAE-QDGEFLVPLSDERLVAVRQSIR-IHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYAAEAVLQRG-------GAGDEGKAQGKTD-----------TPANALLDELLTTDADNWAPLLVQKLHGGGPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIIDKV 980
M+ +ITK+ A EL VS++V+ V+ P FFLR+AE +D A +EK +L LA+ + L+ ++ E ++D+ + V+ VV AAE + GEFLVPLS ER+ A++ ++R + +LD FL+TV AWM+KS Q G+DGM+ ILQKVLQ+YA A+++ GA G++Q + D TPA ALL++L+ D D W L + G ++ LMG VQ IE VVL E+GSMAQRVQAE+L ELVS I+ +
Sbjct: 82 MDDMITKLADA-KPYELPNAVSRAVRVVSSPRFFLRIAERADMATSDIEKEKLSALAENLVSTLEAVLSTTEDRLDERAKEVESVVKAAAEPESGEFLVPLSAERVNAMQTTLRKLDPISLDEGFLSTVDAWMNKSHQDGMDGMVGILQKVLQMYAGTAIVRARSQLQANVGAAVSGQSQEQADKVIAKEEEKGLTPAAALLEKLMAMDTDLWDAELRSNITAEGGISPATLMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVSRIEAI 351
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A7R9WEL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEL2_9STRA) HSP 1 Score: 184 bits (466), Expect = 2.670e-48 Identity = 119/269 (44.24%), Postives = 165/269 (61.34%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAE-QDGEFLVPLSDERLVAVRQSI-RIHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYA------AEAVLQRG-GAGDEGKAQGKTDT-----------PANALLDELLTTDADNWAPLLVQKLHGGGPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIID 974
M+++ITK+ A EL VSK+++ V+ P FF+R+AE +DQ D V K +L L++ V L+ ++ E ++D+ + V+ VV AAE + GEFLVPL+ +R+ A+R+++ ++ +LD FL+TV AWM+KS Q G+DGM+ ILQKVLQIYA A A LQ GA G++QGK D PA ALL++L+ D D W L + V LMG VQ IE VVL E+GSMAQRVQAEFL ELVS ++
Sbjct: 87 MDEMITKLADA-KPYELPQAVSKAIRVVSSPRFFMRIAERADQTTDKVMKAKLAALSENVVATLEAVVSTTEDRLDERAKDVEDVVKAAAEPESGEFLVPLTKDRVDAMREAMEKLDSASLDEGFLSTVDAWMNKSHQDGMDGMVGILQKVLQIYAGTEIKRARAQLQANVGAAVSGQSQGKADEVLAEEEKGGLKPAAALLEDLMEMDTDLWDSELSKSFSDENGVGPKALMGEVQRTIEGVVLGLENGSMAQRVQAEFLRELVSRVE 354
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A7S2MXS5_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXS5_9STRA) HSP 1 Score: 182 bits (462), Expect = 9.440e-48 Identity = 117/271 (43.17%), Postives = 165/271 (60.89%), Query Frame = 3
Query: 228 MEQVITKIRSAPNEDELALIVSKSVKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQD-GEFLVPLSDERLVAVRQSIR-IHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYAAEAV------LQRG-GAGDEGKAQGKTD-----------TPANALLDELLTTDADNWAPLLVQKLHGGGPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIIDKV 980
M+ +ITK+ A EL VS++++ ++ P FFLR+AE +D A D VEK +L LA+ + L ++ E ++D+ + V+ VV AAE D GEFLVPL+ ER+ A+++++R + +LD FL+TV AWM+KS Q G+DGM+ ILQKVLQIYA A+ LQ GA G+ Q + D +PA + L+EL+ D D W L + G ++ LMG VQ IE VVL E+GSMAQRVQAE+L ELVS I+ +
Sbjct: 85 MDDMITKLADA-KPYELPNAVSRAIRVISSPRFFLRIAERADMATDDVEKEKLSALAENLVSTLDAVVSTTEDRLDERAKEVESVVKAAAEPDSGEFLVPLTPERVGAMQKTLRKLDPVSLDEGFLSTVDAWMNKSHQDGMDGMVEILQKVLQIYAGTAITRARAQLQANVGAAVSGQTQEQADEVLAQEEEKGPSPAASFLEELMKMDTDLWDSELRSTIGAEGELSPATLMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVSRIEAI 354
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Match: A0A7S1ZMP8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMP8_TRICV) HSP 1 Score: 176 bits (446), Expect = 9.640e-47 Identity = 111/248 (44.76%), Postives = 153/248 (61.69%), Query Frame = 3
Query: 300 VKTVAQPAFFLRLAELSDQAQDPVEKYRLQKLAKAVQDVLQRLMEFAEKKMDDSSSLVQIVVSTAAEQD-GEFLVPLSDERLVAVRQSIR-IHRDALDNNFLTTVQAWMDKSRQGGLDGMITILQKVLQIYA------AEAVLQRG-GAGDEGKAQGKTDT-----------PANALLDELLTTDADNWAPLLVQKLHGG---GPVTKDGLMGAVQVAIETVVLAQESGSMAQRVQAEFLSELVSIID 974
++ V+ P FFLR+AE +D D +EK +L L++ + L+ ++ E ++D+ + +V+ VV AAE D GEFLVPLS ER+ A+R+++ I LD FL+TV AWM+KS Q G+DGM+ ILQKVLQ+YA A A LQ GA G++QG+ D PA ALL+ L+ TD D+W L + L G V+ +MG VQ IE VVL E+GSMAQRVQAE+L ELV+ I+
Sbjct: 1 IRVVSPPRFFLRIAERADMTDDALEKAKLASLSENLVTTLEAVVSTTEDRLDERAEMVESVVKAAAEPDSGEFLVPLSAERVAAMREALADIESPDLDEGFLSTVDAWMNKSHQDGMDGMVAILQKVLQLYAGVEIKRARARLQASVGAAVSGQSQGQADEVVAEQEKGETPPAAALLERLMDTDPDSWDAELRRSLAAEQEEGGVSSQAIMGEVQRTIEGVVLGLENGSMAQRVQAEYLRELVTRIE 248 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1180.1 >prot_S-ischiensis_contig1.1180.1 ID=prot_S-ischiensis_contig1.1180.1|Name=mRNA_S-ischiensis_contig1.1180.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=309bp MTRRRMLLCCLVGAMCAAPAVAFWGPRIGLARARRPLAGLRPRMSADAMEback to top mRNA from alignment at S-ischiensis_contig1:7964868..7971467+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1180.1 ID=mRNA_S-ischiensis_contig1.1180.1|Name=mRNA_S-ischiensis_contig1.1180.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6600bp|location=Sequence derived from alignment at S-ischiensis_contig1:7964868..7971467+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:7964868..7971467+ >mRNA_S-ischiensis_contig1.1180.1 ID=mRNA_S-ischiensis_contig1.1180.1|Name=mRNA_S-ischiensis_contig1.1180.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1854bp|location=Sequence derived from alignment at S-ischiensis_contig1:7964868..7971467+ (Schizocladia ischiensis KU_0333)back to top |