mRNA_S-ischiensis_contig1.1179.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1179.1
Unique NamemRNA_S-ischiensis_contig1.1179.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7963233..7964840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size655
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1179.1prot_S-ischiensis_contig1.1179.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7963233..7964669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.3377547-CDS-S-ischiensis_contig1:7963232..79636121622815361.3377547-CDS-S-ischiensis_contig1:7963232..7963612Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7963233..7963612 -
1695739659.968762-CDS-S-ischiensis_contig1:7963232..79636121695739659.968762-CDS-S-ischiensis_contig1:7963232..7963612Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7963233..7963612 -
1622815361.3485215-CDS-S-ischiensis_contig1:7964366..79644441622815361.3485215-CDS-S-ischiensis_contig1:7964366..7964444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7964367..7964444 -
1695739659.9789143-CDS-S-ischiensis_contig1:7964366..79644441695739659.9789143-CDS-S-ischiensis_contig1:7964366..7964444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7964367..7964444 -
1622815361.35851-CDS-S-ischiensis_contig1:7964644..79646691622815361.35851-CDS-S-ischiensis_contig1:7964644..7964669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7964645..7964669 -
1695739659.9888768-CDS-S-ischiensis_contig1:7964644..79646691695739659.9888768-CDS-S-ischiensis_contig1:7964644..7964669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7964645..7964669 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.3678503-UTR-S-ischiensis_contig1:7964669..79648401622815361.3678503-UTR-S-ischiensis_contig1:7964669..7964840Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7964670..7964840 -
1695739659.9975948-UTR-S-ischiensis_contig1:7964669..79648401695739659.9975948-UTR-S-ischiensis_contig1:7964669..7964840Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7964670..7964840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1179.1

>prot_S-ischiensis_contig1.1179.1 ID=prot_S-ischiensis_contig1.1179.1|Name=mRNA_S-ischiensis_contig1.1179.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=161bp
MFGGGFGTPKCIRRWKCLRGWHEHGVRGQAGRHLDLRRPCPSPGGFRHHH
RGLRSRPSEARLRGHGRRVRHGPGRRHRRSLWRRGHRRDQRLWSHHVHGP
LWRPVRPGRVWRRRGRWGCFRNRRRRRWRQQVSVRRGDGGDTRQPLWRQA
SHGQPVWRRGA
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mRNA from alignment at S-ischiensis_contig1:7963233..7964840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1179.1 ID=mRNA_S-ischiensis_contig1.1179.1|Name=mRNA_S-ischiensis_contig1.1179.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1608bp|location=Sequence derived from alignment at S-ischiensis_contig1:7963233..7964840- (Schizocladia ischiensis KU_0333)
GACGGGAAGGGGGGGGCTGGAGCGACGTAGGCGAGCCTTCCTGGCGTACA
TGACGGGCGTGTAGTGAGCCACACGCTTCTGCTTCAGGGACACGCTGCGG
TCGTGCGGACGACGGACAACCCTGGCAATCCTCCCATCCACAGGCGCCGA
AATTGATTTTGGCCTAAGGCCATGTTTGGAGGTGGCTTCGGGACGCGTGA
GTACCGGTTCCTGAAGCGTGCAGTTTGTTATTTTCCAGGGTGTTGCTTGT
GCTGGTTCCTACCCTGTGGGCTGTTGACGGCGTCTTGTGGGTTTGTGTTC
ATGGTTCCCGCCCATTGTTGAACACCACCACACCCTGCGCCCCTCCACAA
AAAACGCACGCCCACAGCGTCTCCATTCGGGGCGACAGGACAGCAGCAAA
ATGCATTCGGCGGTGGAAGTGCCTTCGGGGGTGGCACGAACACGGCGTTC
GGGGCCAAGCCGGCCGGCACCTTGGTGAGTGGCGGGGTCCCGGAGGTCCT
CCGCAGCATTTCAGTAAATCGTGCAGTTTTGCATAGATGGCGTGTAGGGG
AGGGGACCTCCCTTACCGCAGTAGGCTGTGATTGCACTGTTGCCGGCTAT
ACCGCAGTGCTTGCTCGCGGCCCGCGCGCACTCGCGCACAAATCTGGAGG
CGCAAACTGGTTTTGCAAGAGGGATACCTAGCGCCACAGTGAGCTTCCAG
CGGTGTTTGAACTTGTGACAGGTGCCTCTAATTTTTTCTTTCTGTTGACA
CCGGGAACGTCGCGAACCATGCGCCACAGCGCGAGCAATTGGCGCCAATG
TGGCCATAAAGCGTCACAATGAACACACATTTTTGGCCGGGACAGGCCCT
CGGCCCGAAAATACACACGCCTGCACAGGTGGCCCCTCTATGAAAGGAGT
TCCACTCCGCCTAACCAGCGTCGTTCCCCTCCCCTATAAATTCAAAACCC
TCATTGGCCGAAAGCGGTCGATGTGAGCCTCTGTCGCCTCTTGTATATTC
GACCCGTGCGTGGGTACGTACCTGTGCCAGAACTCTTCCATGATGCCCGT
GTCGAAAAATAGAAACTCGCCTACGCCGTTGATTGCAACACCCCTTAACG
ACGCCTCTTCCCCCCCCTGCCGCCGCCCCCTCTCCCCCCCCCCCTCCCTA
CTTCCCTCACTTCTCCCTCTAGCCCCTCCTCGCCCTAACTTATCCTGCCC
GTGCCGCTGCCCAACGCCACCACCATAGACCTTCGGCGCCCCTGCCCCAG
CCCCGGCGGCTTTCGGCACCACCACAGGGGCCTTCGGAGCCGCCCAAGCG
AAGCCCGCCTTCGGGGCCACGGGCGGCGCGTTCGGCACGGGCCAGGCCGC
CGGCACCGGCGGAGCCTTTGGCGCCGGGGCCACAGGCGCGACCAGCGCCT
TTGGTCGCACCACGTCCACGGGCCCCTTTGGCGCCCCGTCCGGCCTGGGC
GCGTTTGGCGCCGCCGGGGCCGGTGGGGGTGCTTTCGGAACCGCCGCAGG
CGCCGCTGGCGCCAACAAGTCTCCGTTCGGCGCGGCGACGGCGGCGACAC
CCGCCAGCCCCTTTGGCGCCAAGCCAGTCACGGCCAGCCCGTTTGGCGGC
GGGGGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7963233..7964840-

>mRNA_S-ischiensis_contig1.1179.1 ID=mRNA_S-ischiensis_contig1.1179.1|Name=mRNA_S-ischiensis_contig1.1179.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=966bp|location=Sequence derived from alignment at S-ischiensis_contig1:7963233..7964840- (Schizocladia ischiensis KU_0333)
ATGTTTGGAGGTGGCTTCGGGACGCATGTTTGGAGGTGGCTTCGGGACGC
CAAAATGCATTCGGCGGTGGAAGTGCCTTCGGGGGTGGCACGAACACGGC
GTTCGGGGCCAAGCCGGCCGGCACCTTGCAAAATGCATTCGGCGGTGGAA
GTGCCTTCGGGGGTGGCACGAACACGGCGTTCGGGGCCAAGCCGGCCGGC
ACCTTGACCTTCGGCGCCCCTGCCCCAGCCCCGGCGGCTTTCGGCACCAC
CACAGGGGCCTTCGGAGCCGCCCAAGCGAAGCCCGCCTTCGGGGCCACGG
GCGGCGCGTTCGGCACGGGCCAGGCCGCCGGCACCGGCGGAGCCTTTGGC
GCCGGGGCCACAGGCGCGACCAGCGCCTTTGGTCGCACCACGTCCACGGG
CCCCTTTGGCGCCCCGTCCGGCCTGGGCGCGTTTGGCGCCGCCGGGGCCG
GTGGGGGTGCTTTCGGAACCGCCGCAGGCGCCGCTGGCGCCAACAAGTCT
CCGTTCGGCGCGGCGACGGCGGCGACACCCGCCAGCCCCTTTGGCGCCAA
GCCAGTCACGGCCAGCCCGTTTGGCGGCGGGGGGCTACCTTCGGCGCCCC
TGCCCCAGCCCCGGCGGCTTTCGGCACCACCACAGGGGCCTTCGGAGCCG
CCCAAGCGAAGCCCGCCTTCGGGGCCACGGGCGGCGCGTTCGGCACGGGC
CAGGCCGCCGGCACCGGCGGAGCCTTTGGCGCCGGGGCCACAGGCGCGAC
CAGCGCCTTTGGTCGCACCACGTCCACGGGCCCCTTTGGCGCCCCGTCCG
GCCTGGGCGCGTTTGGCGCCGCCGGGGCCGGTGGGGGTGCTTTCGGAACC
GCCGCAGGCGCCGCTGGCGCCAACAAGTCTCCGTTCGGCGCGGCGACGGC
GGCGACACCCGCCAGCCCCTTTGGCGCCAAGCCAGTCACGGCCAGCCCGT
TTGGCGGCGGGGGGCT
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