mRNA_S-ischiensis_contig1.1178.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1178.1
Unique NamemRNA_S-ischiensis_contig1.1178.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7958870..7959920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPeptidase S59, nucleoporin
Ec32 orthologEc-26_004030.2
Hectar predicted targeting categoryother localisation
Exons2
Model size593
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.291469-CDS-S-ischiensis_contig1:7958869..79589651622815361.291469-CDS-S-ischiensis_contig1:7958869..7958965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7958870..7958965 -
1695739659.9420846-CDS-S-ischiensis_contig1:7958869..79589651695739659.9420846-CDS-S-ischiensis_contig1:7958869..7958965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7958870..7958965 -
1622815361.3030295-CDS-S-ischiensis_contig1:7959425..79599201622815361.3030295-CDS-S-ischiensis_contig1:7959425..7959920Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7959426..7959920 -
1695739659.9568048-CDS-S-ischiensis_contig1:7959425..79599201695739659.9568048-CDS-S-ischiensis_contig1:7959425..7959920Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7959426..7959920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1178.1prot_S-ischiensis_contig1.1178.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7958870..7959920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1178.1

>prot_S-ischiensis_contig1.1178.1 ID=prot_S-ischiensis_contig1.1178.1|Name=mRNA_S-ischiensis_contig1.1178.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
ARPAAPAPAPGTGFGGFGGFGSSFGGAAGSTASKSLFGAPAPAPAPGSLF
GAPAAAPAASPASGFSFGAQASAPSALGGGTSLFGTPAPAPAPGGLFGGF
GTTGTTGGTTGGFGFGGFGAGVAAPGTAAAGAASAPGQTLVASHNQNAFG
NPAVPTFGVGELQQKVASVQSSRQQLELHLGGGRRSARGYPQPGSGG
back to top

mRNA from alignment at S-ischiensis_contig1:7958870..7959920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1178.1 ID=mRNA_S-ischiensis_contig1.1178.1|Name=mRNA_S-ischiensis_contig1.1178.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1051bp|location=Sequence derived from alignment at S-ischiensis_contig1:7958870..7959920- (Schizocladia ischiensis KU_0333)
GCCAGGCCGGCCGCCCCTGCCCCGGCCCCCGGAACCGGCTTCGGCGGGTT
CGGGGGCTTTGGAAGCAGCTTTGGGGGGGCGGCGGGCTCCACCGCCTCCA
AGTCTCTGTTTGGCGCCCCTGCCCCTGCCCCCGCGCCGGGGTCCCTCTTC
GGGGCCCCGGCGGCGGCGCCTGCGGCCTCCCCGGCCAGCGGCTTTTCCTT
TGGCGCCCAGGCCTCCGCCCCGTCTGCACTGGGCGGTGGGACCAGCTTGT
TTGGCACCCCGGCCCCCGCCCCGGCCCCCGGCGGGTTGTTCGGCGGCTTT
GGCACCACTGGGACGACTGGCGGCACGACGGGTGGCTTCGGCTTCGGCGG
CTTTGGTGCCGGCGTGGCGGCCCCCGGCACGGCTGCTGCTGGCGCCGCTT
CTGCCCCCGGGCAGACGCTGGTGGCTAGTCACAACCAGAACGCCTTCGGG
AACCCGGCCGTGCCCACCTTTGGCGTAGGGGAGCTGCAGCAGAAGGTGAG
AACGCCAGCCAAGAGGCGGCAAGCGGGCGGGCCCATGTGCCCTCCGTTGG
GTATAGAGTCGAGTATGGCAAGGGATTGTGGCTCACATGCCGCCGCGTCA
GTGGCGCTGGCAGTGCTTCCGTGTTTGTTGTTGTGCGGCCTGTTTGCGGA
TGGTGGGGTGTGCTGGCTGCTGCCCCGTTGGACGGCTCCTGGGACTGCCT
CACGCACGCCTCCTCAAGTTGTGGAGGGCGACGGACGGCCAGCTGTTGTC
CAGTGCTTGGAAGTACTTGCTCTCCTTTCCGAAACCCGCGAACCTTCCCC
ACCCTGCCACCCGACCCACCATCCATTCACTTCCAATCATAAGCCAACGA
TAATGGGGCACACAGCCTGATCCTCCCCCGCCCCCCCGGCTTGGGCCTCA
CGCGCCCTCTCGACTCTCGTAACTTTTGCACACACGCACACACACATGCT
CACAGGTGGCGAGCGTGCAGAGCAGCCGACAACAGCTGGAGCTGCACCTG
GGAGGGGGCAGGCGCTCCGCACGCGGGTACCCCCAGCCCGGTAGCGGCGG
C
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7958870..7959920-

>mRNA_S-ischiensis_contig1.1178.1 ID=mRNA_S-ischiensis_contig1.1178.1|Name=mRNA_S-ischiensis_contig1.1178.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig1:7958870..7959920- (Schizocladia ischiensis KU_0333)
GCCAGGCCGGCCGCCCCTGCCCCGGCCCCCGGAACCGGCTTCGGCGGGTT
CGGGGGCTTTGGAAGCAGCTTTGGGGGGGCGGCGGGCTCCACCGCCTCCA
AGTCTCTGTTTGGCGCCCCTGCCCCTGCCCCCGCGCCGGGGTCCCTCTTC
GGGGCCCCGGCGGCGGCGCCTGCGGCCTCCCCGGCCAGCGGCTTTTCCTT
TGGCGCCCAGGCCTCCGCCCCGTCTGCACTGGGCGGTGGGACCAGCTTGT
TTGGCACCCCGGCCCCCGCCCCGGCCCCCGGCGGGTTGTTCGGCGGCTTT
GGCACCACTGGGACGACTGGCGGCACGACGGGTGGCTTCGGCTTCGGCGG
CTTTGGTGCCGGCGTGGCGGCCCCCGGCACGGCTGCTGCTGGCGCCGCTT
CTGCCCCCGGGCAGACGCTGGTGGCTAGTCACAACCAGAACGCCTTCGGG
AACCCGGCCGTGCCCACCTTTGGCGTAGGGGAGCTGCAGCAGAAGGCCAG
GCCGGCCGCCCCTGCCCCGGCCCCCGGAACCGGCTTCGGCGGGTTCGGGG
GCTTTGGAAGCAGCTTTGGGGGGGCGGCGGGCTCCACCGCCTCCAAGTCT
CTGTTTGGCGCCCCTGCCCCTGCCCCCGCGCCGGGGTCCCTCTTCGGGGC
CCCGGCGGCGGCGCCTGCGGCCTCCCCGGCCAGCGGCTTTTCCTTTGGCG
CCCAGGCCTCCGCCCCGTCTGCACTGGGCGGTGGGACCAGCTTGTTTGGC
ACCCCGGCCCCCGCCCCGGCCCCCGGCGGGTTGTTCGGCGGCTTTGGCAC
CACTGGGACGACTGGCGGCACGACGGGTGGCTTCGGCTTCGGCGGCTTTG
GTGCCGGCGTGGCGGCCCCCGGCACGGCTGCTGCTGGCGCCGCTTCTGCC
CCCGGGCAGACGCTGGTGGCTAGTCACAACCAGAACGCCTTCGGGAACCC
GGCCGTGCCCACCTTTGGCGTAGGGGAGCTGCAGCAGAAGGTGGCGAGCG
TGCAGAGCAGCCGACAACAGCTGGAGCTGCACCTGGGAGGGGGCAGGCGC
TCCGCACGCGGGTACCCCCAGCCCGGTAGCGGCGGCGTGGCGAGCGTGCA
GAGCAGCCGACAACAGCTGGAGCTGCACCTGGGAGGGGGCAGGCGCTCCG
CACGCGGGTACCCCCAGCCCGGTAGCGGCGGC
back to top