mRNA_S-ischiensis_contig1.1172.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1172.1
Unique NamemRNA_S-ischiensis_contig1.1172.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: D8LQ56_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ56_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 8.920e-110
Identity = 167/220 (75.91%), Postives = 190/220 (86.36%), Query Frame = 1
Query:  100 RVTYLGVVRFADRVTVAEYSPTEANDGVVIKELMSNPDTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
            R+T+LGV+RF DRV VA YSP+EA+D ++IKELMSNPDTFVEPRKRY+ EG+MFSIHF ADD NR+Y+CVTDKEYP RIAF LLEE Q+KFLTKVGDKSLTAKEG L+R+ KSSFSDLCIKYDD+RNVDR+AAVQDKV+VVK  M+DNIQQMLANEE+L+ I  NAENLNEQAKVFQNRSSALRRQMRCKAIKMW+LLA           VPIA++ K N
Sbjct:    4 RITFLGVIRFTDRVLVAGYSPSEADDSLIIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLALXXXXXXXXXXVPIALHAKNN 223          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A835YU71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU71_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.870e-86
Identity = 143/243 (58.85%), Postives = 184/243 (75.72%), Query Frame = 1
Query:  100 RVTYLGVVRFADRVTVAEYSPT-EANDGVVIKELMSNPDTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVF-----------------------QNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKK 756
            RV+++GV RF D++ VA+YSP  + ND + +K ++S+P+ FVEP +RYTNEG +  +HF ADD NRVY  VTDK+YP R+AFALL+E+QSKFLTKVG+KSL+AKE +L+R+ +SSF+D+C+KYDDV+NVD+LA+VQ KV+ VKT ME+NI QMLANEE LE I ANAENLNEQA+                         QNRS+ALRR MRCKA+KMW LLAFVI I+LI +IVP+A+Y K 
Sbjct:    4 RVSFIGVYRFLDQICVAQYSPKGDTNDSIAVKSVISSPNVFVEPGRRYTNEGDVCCVHFVADDSNRVYTVVTDKQYPARVAFALLDEVQSKFLTKVGEKSLSAKEDTLSRTMRSSFADICLKYDDVKNVDKLASVQGKVDAVKTKMEENISQMLANEETLESISANAENLNEQARXXXXXXXXXXXXXXXXXXXXXXXXXQNRSTALRRNMRCKALKMWFLLAFVITIVLIIIIVPLAMYSKN 246          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A7S2XW80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW80_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.360e-37
Identity = 65/112 (58.04%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  235 RYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEE 570
            RY+ EG  F++HF  D+R+R+Y  +T K+YP R+AF LLEE+QSKFL KVGD+SL+ KEG L  +CK  F+++C +Y+DV   D+LAAVQ KV+VVK+IMEDNI +ML N+E
Sbjct:    1 RYSTEGVEFTLHFVGDERHRLYCVITAKDYPSRVAFTLLEELQSKFLDKVGDRSLSVKEGGLNGTCKKMFTNICHRYEDVEGADKLAAVQGKVDVVKSIMEDNISKMLKNQE 112          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: W7U318_9STRA (R-snare vamp72-family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U318_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.200e-35
Identity = 81/224 (36.16%), Postives = 129/224 (57.59%), Query Frame = 1
Query:   85 RMAPNRVTYLGVVRFADRVTVAEYSPTEANDGVVIKELMSNPDTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKK 756
            R A   + +LGV RF DR  VA ++     D   +KE++ +    V P   ++      S H  +D   R++  ++++ YP R A A LEE Q  FL K G KSL  KE  L +S       LC KYD++  VD+LAAV +KV+ VK ++++N+Q  LAN   L++I   AE+L  QA +F+  ++ L++QM  K ++M +++   I+ +L+ +I+PIAV  K+
Sbjct:    4 RKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKR 227          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A3F2RIK7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIK7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.390e-34
Identity = 82/235 (34.89%), Postives = 131/235 (55.74%), Query Frame = 1
Query:   97 NRVTYLGVVRFADRVTVAEY------SPTEANDGVV--IKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
            + V +L + R  D+  VA Y       P    DG +   KE++          + V P  R++ +      HFT D+   V+A +T K+YP R+AF ++  +Q + + K G K+LT +EG L + C  +F+++   +DD   VD+L+ V   V+ VKT+M +NIQ +L+N EK+E +     +LNEQAKVF+N    LRRQM  K +K+ ILL    V++L+ L+  + V+ K +
Sbjct:   14 DNVKFLAIARATDKAVVATYMHSSDGKPNRGGDGDINTFKEMLGKVIRAPTWKSQVTPNGRHSLDCDPNKFHFTMDNDELVFAAITSKDYPIRLAFQMISAVQQEIVPKYGSKALTCREGGLDKDCAKAFANIASTFDDRTKVDKLSEVMHHVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLGVCAVLVLLILLAVLGVFKKSS 248          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A0P1ACV1_PLAHL (Vesicle-associated membrane protein 7b n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACV1_PLAHL)

HSP 1 Score: 134 bits (338), Expect = 8.520e-34
Identity = 83/245 (33.88%), Postives = 135/245 (55.10%), Query Frame = 1
Query:   64 SPRAKKTRMAPNRVTYLGVVRFADRVTVAEYSPTEAN-------DGVVIKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
            +P A    +  + + +L + R  D+V VA Y  T          D  V +E++S         T V P  R++ +      HFT ++   V+A +T K+YP R+AF ++  +Q++ + K G K+LT +E  L + C   F+ +   YDD   VD+L+ V  +V+ VKT+M +NIQ +L+N EK+E +     +LNEQAKVF+N    LRRQM  K +K+ ILL+   +++L  L+  + V+ K +
Sbjct:    2 APSAAAASLTRDNIKFLAIARATDKVIVACYMHTAGKPVRNGEGDMNVFREMLSKVIRAPTWKTQVTPNGRHSLDCDPNKFHFTMNNDELVFAAITSKDYPIRLAFQMISAIQTEIIPKFGSKALTCRENGLDKDCAKIFTAIAAGYDDRTKVDKLSDVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLSVCAILVLFILLAVLGVFKKSS 246          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: W2QEA6_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QEA6_PHYPN)

HSP 1 Score: 131 bits (329), Expect = 1.800e-32
Identity = 83/243 (34.16%), Postives = 133/243 (54.73%), Query Frame = 1
Query:   61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEY------SPTEANDGVV--IKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVY 747
            A   A    +  + + +L + R  D+V VA Y       P    +  V   +E++S         T V P  R++ E      HFT ++   V+A +T K+YP R+AF ++  +Q++ + K G K+LT +E  L + C  +F+ +   YDD   VD+L+ V  +V+ VKT+M +NIQ +L+N EK+E +     +LNEQAKVF+N    LRRQM  K +K+ ILL    V++L+ L+  + V+
Sbjct:    2 APATAASASLTRDNIKFLAIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVPKYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLGICAVLVLLILLAVLGVF 244          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A225WZK3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZK3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.610e-31
Identity = 84/246 (34.15%), Postives = 137/246 (55.69%), Query Frame = 1
Query:   61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEY-----SPTEA--NDGVVIKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
            A P A    +  + + +L + R  D+V VA Y      P+    N+    KE++S         T V P  R++ E      HFT ++   V+A +T K+YP R+AF ++  +Q++ + K G K+LT +E  L + C  +F+ +   YDD   VD+L+ V  +V+ VKT+M +NIQ +L+N EK+E +     +LNEQAKVF+N    LRRQM  K +K+ ILL+   +++L+ ++    V+ K +
Sbjct:    2 APPSAAAASLTRDNIKFLAIARATDKVIVACYMHSGGKPSRGGENEMSTFKEMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEVVPKFGSKALTCRENGLDKDCAKAFAAIAATYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRQLRRQMWWKNVKLTILLSICAILVLLIILAVSGVFKKSS 247          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: H3GMP4_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GMP4_PHYRM)

HSP 1 Score: 127 bits (318), Expect = 7.550e-31
Identity = 80/226 (35.40%), Postives = 123/226 (54.42%), Query Frame = 1
Query:   61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEYSPTE----ANDGV----VIKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLA 696
            A P A    +A + + +L + R  D+V VA Y  +     A  G       KE++          T V P  R++ +      HFT ++   V+A +T K+YP R+AF ++  +Q + + K G K+LT +E  L + C  +F+ +   YDD   VD+L+ V   V+ VKT+M +NIQ +L+N EK+E +     +LNEQAKVF+N    LRRQM  K +K+ ILL+
Sbjct:    2 APPSAASASLARDNIKFLAIARATDKVVVACYMHSSDGKPARGGAPEMNTFKEMLGKVIRAPTWKTQVTPNGRHSLDCDPNKFHFTMNNDELVFAVITAKDYPIRLAFQMISAIQQEIVPKYGSKALTCRENGLDKDCAKAFAGIAGTYDDRTKVDKLSEVMHHVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLS 227          
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: G4YES5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YES5_PHYSP)

HSP 1 Score: 132 bits (331), Expect = 2.120e-30
Identity = 83/236 (35.17%), Postives = 130/236 (55.08%), Query Frame = 1
Query:   61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEY------SPTEANDGVV--IKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLA--FVIVILLI 720
            A P A    +  + + ++ + R  D+V VA Y       P    +  +   KE++          T V P  R++ E      HFT ++   V+A +T K+YP R+AF ++  +Q + + K G K+LT +E  L + C   F+ +  KYDD   VD+L+ V  +V+ VKT+M +NIQ +L+N EK+E +     +LNEQAKVF+N    LRRQM  K +K+ ILL   F++V+L+I
Sbjct:    2 APPTAASASLTRDNIKFMAIARATDKVVVACYMHSSDGKPARGGEAEMNTFKEMLGKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQQEVVPKFGSKALTCRENGLDKDCAKLFASIAAKYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLTVCFILVLLII 237          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ56_ECTSI8.920e-11075.91Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835YU71_9STRA1.870e-8658.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XW80_9STRA2.360e-3758.04Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7U318_9STRA1.200e-3536.16R-snare vamp72-family n=2 Tax=Monodopsidaceae TaxI... [more]
A0A3F2RIK7_9STRA2.390e-3434.89Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A0P1ACV1_PLAHL8.520e-3433.88Vesicle-associated membrane protein 7b n=1 Tax=Pla... [more]
W2QEA6_PHYPN1.800e-3234.16Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A225WZK3_9STRA1.610e-3134.15Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
H3GMP4_PHYRM7.550e-3135.40Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
G4YES5_PHYSP2.120e-3035.17Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7922021..7925260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.9
Seed ortholog evalue4.7e-88
Seed eggNOG ortholog2880.D8LQ56
KEGG koko:K08511,ko:K08515
KEGG Pathwayko04130,map04130
GOsGO:0000149,GO:0000323,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006887,GO:0006906,GO:0006996,GO:0007034,GO:0007041,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030139,GO:0030659,GO:0030666,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045335,GO:0046903,GO:0046907,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0859@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein
Ec32 orthologEc-26_006070.1
Exons4
Model size1044
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1172.1prot_S-ischiensis_contig1.1172.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7922300..7925173 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.1886249-UTR-S-ischiensis_contig1:7922020..79222991622815488.1886249-UTR-S-ischiensis_contig1:7922020..7922299Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7922021..7922299 -
1695739730.2970436-UTR-S-ischiensis_contig1:7922020..79222991695739730.2970436-UTR-S-ischiensis_contig1:7922020..7922299Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7922021..7922299 -
1622815488.2579355-UTR-S-ischiensis_contig1:7925173..79252601622815488.2579355-UTR-S-ischiensis_contig1:7925173..7925260Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7925174..7925260 -
1695739730.347679-UTR-S-ischiensis_contig1:7925173..79252601695739730.347679-UTR-S-ischiensis_contig1:7925173..7925260Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7925174..7925260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.205283-CDS-S-ischiensis_contig1:7922299..79223851622815488.205283-CDS-S-ischiensis_contig1:7922299..7922385Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7922300..7922385 -
1695739730.3131592-CDS-S-ischiensis_contig1:7922299..79223851695739730.3131592-CDS-S-ischiensis_contig1:7922299..7922385Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7922300..7922385 -
1622815488.219337-CDS-S-ischiensis_contig1:7923959..79241341622815488.219337-CDS-S-ischiensis_contig1:7923959..7924134Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7923960..7924134 -
1695739730.3228602-CDS-S-ischiensis_contig1:7923959..79241341695739730.3228602-CDS-S-ischiensis_contig1:7923959..7924134Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7923960..7924134 -
1622815488.232081-CDS-S-ischiensis_contig1:7924474..79247831622815488.232081-CDS-S-ischiensis_contig1:7924474..7924783Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7924475..7924783 -
1695739730.3312342-CDS-S-ischiensis_contig1:7924474..79247831695739730.3312342-CDS-S-ischiensis_contig1:7924474..7924783Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7924475..7924783 -
1622815488.2438142-CDS-S-ischiensis_contig1:7925065..79251731622815488.2438142-CDS-S-ischiensis_contig1:7925065..7925173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7925066..7925173 -
1695739730.339405-CDS-S-ischiensis_contig1:7925065..79251731695739730.339405-CDS-S-ischiensis_contig1:7925065..7925173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7925066..7925173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1172.1

>prot_S-ischiensis_contig1.1172.1 ID=prot_S-ischiensis_contig1.1172.1|Name=mRNA_S-ischiensis_contig1.1172.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=226bp
MAPNRVTYLGVVRFADRVTVAEYSPTEANDGVVIKELMSNPDTFVEPRKR
YTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVG
DKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIME
DNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWI
LLAFVIVILLIALIVPIAVYCKKNC*
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mRNA from alignment at S-ischiensis_contig1:7922021..7925260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1172.1 ID=mRNA_S-ischiensis_contig1.1172.1|Name=mRNA_S-ischiensis_contig1.1172.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3240bp|location=Sequence derived from alignment at S-ischiensis_contig1:7922021..7925260- (Schizocladia ischiensis KU_0333)
GTCCCCTCCGCGCTCTGGGTTGGGCGGAAGAAGAAAGCCACTCCAGGGCT TGTGGGGGGAGCGTCACCTCGCGCAAAAAAGACCAGGATGGCGCCCAACC GAGTCACGTATCTGGGGGTTGTTCGGTTCGCAGACCGAGTCACAGTTGCA GAGTACTCACCAACAGAGGCAAACGATGGGGTGGTCATCAAGGAGGTGAG CAGTCGGGTAGCCGTGCTGTACTGCTGGGCATGACTGGACGGGGCAGCAT GGCCACGTGATTTTCTCCTTCGCAATTGATTTTCGGGGATCGGGCATATT CGTGCAGGCGCTTGATGCATTTTGCGAGGCTATGTTTGTTCCTCTGCCCC TTTGAGTTGGTGTTCCTCTGTTGCGTGTCCGCTTCCAGCTAGCTGCATGT TCCTCGGTCGACCCAGAGCAACTAAGGTCATGCTACTGGCCCCCTTCTTC CCCGTCTGGCGCCCCCGCGTGCCGCAGCTCATGTCCAACCCGGACACTTT CGTGGAGCCTCGTAAGCGCTACACAAACGAGGGGCAGATGTTCAGCATCC ACTTCACAGCGGACGACCGAAACCGCGTCTACGCGTGCGTCACGGACAAG GAGTATCCGCCACGCATCGCCTTCGCCCTGCTGGAGGAGATGCAAAGCAA GTTCCTGACCAAGGTCGGGGACAAGTCGCTCACGGCCAAGGAAGGGAGCC TCACCCGGTCATGCAAGAGCAGCTTCTCGGACTTGTGCATCAAATATGAC GACGTCCGCAACGTGGACCGCCTGGCGGCCGTGCAGGTGGGCGGGGTGGG AACGTGTGGTTCAGTTGGAGTGGGCCAAGGCGGGGCGGCAGGGCTTGCCA GTGACCCTCGTAGCGTCAGGCTTATATTGTGACGTGGGCCACGCTCAATG ACAGCCTGCTTGACGCGAGCACGAACGCATGCGCAGGCGTACAAGGAACC GCGGCCATGCACACACGCGCGCTCGCGCACACACGCACACGCACACCGCA CAAGCACACACACACACACACACACCGCACCACACACACATGCATGCGCG CCCGCTTCGGGCCGGTGTATTATCTCCGCCCCCCGCCCTCCACCACCGCC GCCGCCGGCTGGTCTTGGCCGTTTAGGACAAGGTGGAGGTGGTGAAGACT ATAATGGAGGACAACATACAGCAGATGCTGGCCAACGAGGAGAAGCTGGA GCACATCGGGGCCAACGCGGAGAACCTCAACGAGCAGGCCAAGGTCTTCC AGAACCGCTCCAGCGCCCTGCGGCGGCAGATGCGCTGCAAGGCCATCAAG AGTGAGTGCACCCGCCCGCCCGCCTGCCTGCCTGCCTGCCTGCCTGCCTG CCCGCCTGCCTGCCTGCGTGCGTGCGTGCTTGTGCGTGCCATTGTCTGAT CCTGTGCCGTCGCATCCCGGGGGGCGTTATGTTAGTGCAGTACAGTGCTG TGCTTGGTAGCTTCGAACATGTACTGTCTGGCTGCATCTGTACTTGTAGG TGCCGTGGGGGAAGTTTTAAAGTAGGGACAACGGGGACAGTCGCAGGGAC GGGCGGCAACAGTCCAGGCCAAACCTGCCAACAAACCTTCGTCTATTCCG GGAGAAAAGATTGGGTTGCTTTGTTAAATTCTGGGGGGATTTCCAAACGA AACAATCAATAGTTTGCAAGGGAGTACGTTCCATATGGTAGTATTTTAAG CAACAACACGGGGCGAGGTGCAGTAGTAGTATTGACAGGAACAACGCAGG GCGAGCAAGCAGACTTCTACTCTACCTACATAGAGCTCTAGTATGAAGTA CAGGACCACCTGCAGGTACAATGCACAGTACTTGTATCTACCAAGTAGAC ATACTGGGAGATATATTGAATGCTCCGTCGTCAATGGCGCGGGGTCAATG GTCTCGGGACTACGGCGAGCACAACGTGAGTAATACATGTTGTACTTCGA AGTATATAGAGCTCTATATGTACTCACGTTGTGCTTGCCATAGTCCCGAT ACCGTTGACCACGCGCCGTTGACGATGGATCATTGTCCCTCCCGCCCCTG GCAAGCCAGGGTGGGAGGGAGGAACCACTCCCCCCGCGCATGGCGGGGGA GTGGTTGGGTCCATTCAAGTATATGTACAGTATGAGCAGTTTGAACTCTA CTAGTACTGTAGATGTGTACTCACCTTGTGCTTGCCGTAGTCCCTACAGT AGTACTCGAGTACTGTAGATACTCTGACTACTTGTACGGCAAGCCAGAGG CGTGCACCCCCCCTATTCCACCCTGGCTCTGCCAGGGGAGGGAGGGGGCA TGCTCCGTCTCGGTCAAGGCGCATGGTCCATGGACTCTGGACTACGGCAA GCATAGTTTTTAGTGCATGGGTATATACTTGGAAGTATGTACTACTGTAG TACGAGCAGTACAATAACCGTTCGACATCAATTTATTTAAGAGCAGTAGC CCTGCGGGGGTATTACCGGTACTGATCGGTGGTACAGCACGTAATATGTA TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCATTGGCTTGTCTTGC GACATAGCCTTGCGTGCAACGCTGATACTGGGCATATAGACAGACGGTAT ATGTGGCATGCACAGAACCCGGGGTAATAACAACCCTGTGAGACGTGAGT ACTCGTACATGTGTATGCACTCACGTGGTGCTTGCCGCAGTCCCAAGAAC ATTGACCATGCGCCTCTACCGAGACGGAGCAGGTGACAACATCAAAGTAC TGGTACTGCAAGTACATGAAAACAGTCGCCTGTGCTCATGCATTGATACA AATGGCCCGTGCTATGCCATGCCCGCCTCTCTCCCTGCCGCCTGTCTCCT CCTCATCACCCTCTGTGTTTGCCAGTGTGGATCCTTCTGGCGTTCGTGAT CGTCATCCTCCTCATCGCGCTCATCGTGCCCATAGCCGTGTACTGCAAGA AGAACTGCTGAAGTGCGACCGCGCACGCGCACGTGTGTGAGGGGAGCTGT TGAGGCGGGAAGGAGGGAGGAGAAGGGAGGGAGAGAGGGGAGGGCTGGCA GGATGGACGTCTCATGGGTGCCATGAGCTCAAACACGAGGCGGCAAGAGG CGGTGACAGGAGGGGGTGCTCCGCCCAAGCGCCAGCAGGTTCGGTGGGCC TTGCTTTTACTTAGGAGATGATGAGGCTCCAGGGACTGGGCCGAACTGGG CAGGGTAGGGCCGAGAGGGCTGTTTGGTGGCGCGCGGTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7922021..7925260-

>mRNA_S-ischiensis_contig1.1172.1 ID=mRNA_S-ischiensis_contig1.1172.1|Name=mRNA_S-ischiensis_contig1.1172.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1356bp|location=Sequence derived from alignment at S-ischiensis_contig1:7922021..7925260- (Schizocladia ischiensis KU_0333)
ATGGCGCCCAACCGAGTCACGTATCTGGGGGTTGTTCGGTTCGCAGACCG
AGTCACAGTTGCAGAGTACTCACCAACAGAGGCAAACGATGGGGTGGTCA
TCAAGGAGATGGCGCCCAACCGAGTCACGTATCTGGGGGTTGTTCGGTTC
GCAGACCGAGTCACAGTTGCAGAGTACTCACCAACAGAGGCAAACGATGG
GGTGGTCATCAAGGAGCTCATGTCCAACCCGGACACTTTCGTGGAGCCTC
GTAAGCGCTACACAAACGAGGGGCAGATGTTCAGCATCCACTTCACAGCG
GACGACCGAAACCGCGTCTACGCGTGCGTCACGGACAAGGAGTATCCGCC
ACGCATCGCCTTCGCCCTGCTGGAGGAGATGCAAAGCAAGTTCCTGACCA
AGGTCGGGGACAAGTCGCTCACGGCCAAGGAAGGGAGCCTCACCCGGTCA
TGCAAGAGCAGCTTCTCGGACTTGTGCATCAAATATGACGACGTCCGCAA
CGTGGACCGCCTGGCGGCCGTGCAGCTCATGTCCAACCCGGACACTTTCG
TGGAGCCTCGTAAGCGCTACACAAACGAGGGGCAGATGTTCAGCATCCAC
TTCACAGCGGACGACCGAAACCGCGTCTACGCGTGCGTCACGGACAAGGA
GTATCCGCCACGCATCGCCTTCGCCCTGCTGGAGGAGATGCAAAGCAAGT
TCCTGACCAAGGTCGGGGACAAGTCGCTCACGGCCAAGGAAGGGAGCCTC
ACCCGGTCATGCAAGAGCAGCTTCTCGGACTTGTGCATCAAATATGACGA
CGTCCGCAACGTGGACCGCCTGGCGGCCGTGCAGGACAAGGTGGAGGTGG
TGAAGACTATAATGGAGGACAACATACAGCAGATGCTGGCCAACGAGGAG
AAGCTGGAGCACATCGGGGCCAACGCGGAGAACCTCAACGAGCAGGCCAA
GGTCTTCCAGAACCGCTCCAGCGCCCTGCGGCGGCAGATGCGCTGCAAGG
CCATCAAGAGACAAGGTGGAGGTGGTGAAGACTATAATGGAGGACAACAT
ACAGCAGATGCTGGCCAACGAGGAGAAGCTGGAGCACATCGGGGCCAACG
CGGAGAACCTCAACGAGCAGGCCAAGGTCTTCCAGAACCGCTCCAGCGCC
CTGCGGCGGCAGATGCGCTGCAAGGCCATCAAGATGTGGATCCTTCTGGC
GTTCGTGATCGTCATCCTCCTCATCGCGCTCATCGTGCCCATAGCCGTGT
ACTGCAAGAAGAACTGCTGATGTGGATCCTTCTGGCGTTCGTGATCGTCA
TCCTCCTCATCGCGCTCATCGTGCCCATAGCCGTGTACTGCAAGAAGAAC
TGCTGA
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