mRNA_S-ischiensis_contig1.1172.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: D8LQ56_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ56_ECTSI) HSP 1 Score: 328 bits (841), Expect = 8.920e-110 Identity = 167/220 (75.91%), Postives = 190/220 (86.36%), Query Frame = 1
Query: 100 RVTYLGVVRFADRVTVAEYSPTEANDGVVIKELMSNPDTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
R+T+LGV+RF DRV VA YSP+EA+D ++IKELMSNPDTFVEPRKRY+ EG+MFSIHF ADD NR+Y+CVTDKEYP RIAF LLEE Q+KFLTKVGDKSLTAKEG L+R+ KSSFSDLCIKYDD+RNVDR+AAVQDKV+VVK M+DNIQQMLANEE+L+ I NAENLNEQAKVFQNRSSALRRQMRCKAIKMW+LLA VPIA++ K N
Sbjct: 4 RITFLGVIRFTDRVLVAGYSPSEADDSLIIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLALXXXXXXXXXXVPIALHAKNN 223
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A835YU71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU71_9STRA) HSP 1 Score: 273 bits (697), Expect = 1.870e-86 Identity = 143/243 (58.85%), Postives = 184/243 (75.72%), Query Frame = 1
Query: 100 RVTYLGVVRFADRVTVAEYSPT-EANDGVVIKELMSNPDTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVF-----------------------QNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKK 756
RV+++GV RF D++ VA+YSP + ND + +K ++S+P+ FVEP +RYTNEG + +HF ADD NRVY VTDK+YP R+AFALL+E+QSKFLTKVG+KSL+AKE +L+R+ +SSF+D+C+KYDDV+NVD+LA+VQ KV+ VKT ME+NI QMLANEE LE I ANAENLNEQA+ QNRS+ALRR MRCKA+KMW LLAFVI I+LI +IVP+A+Y K
Sbjct: 4 RVSFIGVYRFLDQICVAQYSPKGDTNDSIAVKSVISSPNVFVEPGRRYTNEGDVCCVHFVADDSNRVYTVVTDKQYPARVAFALLDEVQSKFLTKVGEKSLSAKEDTLSRTMRSSFADICLKYDDVKNVDKLASVQGKVDAVKTKMEENISQMLANEETLESISANAENLNEQARXXXXXXXXXXXXXXXXXXXXXXXXXQNRSTALRRNMRCKALKMWFLLAFVITIVLIIIIVPLAMYSKN 246
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A7S2XW80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW80_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.360e-37 Identity = 65/112 (58.04%), Postives = 88/112 (78.57%), Query Frame = 1
Query: 235 RYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEE 570
RY+ EG F++HF D+R+R+Y +T K+YP R+AF LLEE+QSKFL KVGD+SL+ KEG L +CK F+++C +Y+DV D+LAAVQ KV+VVK+IMEDNI +ML N+E
Sbjct: 1 RYSTEGVEFTLHFVGDERHRLYCVITAKDYPSRVAFTLLEELQSKFLDKVGDRSLSVKEGGLNGTCKKMFTNICHRYEDVEGADKLAAVQGKVDVVKSIMEDNISKMLKNQE 112
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: W7U318_9STRA (R-snare vamp72-family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U318_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.200e-35 Identity = 81/224 (36.16%), Postives = 129/224 (57.59%), Query Frame = 1
Query: 85 RMAPNRVTYLGVVRFADRVTVAEYSPTEANDGVVIKELMSNPDTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKK 756
R A + +LGV RF DR VA ++ D +KE++ + V P ++ S H +D R++ ++++ YP R A A LEE Q FL K G KSL KE L +S LC KYD++ VD+LAAV +KV+ VK ++++N+Q LAN L++I AE+L QA +F+ ++ L++QM K ++M +++ I+ +L+ +I+PIAV K+
Sbjct: 4 RKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKR 227
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A3F2RIK7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIK7_9STRA) HSP 1 Score: 136 bits (342), Expect = 2.390e-34 Identity = 82/235 (34.89%), Postives = 131/235 (55.74%), Query Frame = 1
Query: 97 NRVTYLGVVRFADRVTVAEY------SPTEANDGVV--IKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
+ V +L + R D+ VA Y P DG + KE++ + V P R++ + HFT D+ V+A +T K+YP R+AF ++ +Q + + K G K+LT +EG L + C +F+++ +DD VD+L+ V V+ VKT+M +NIQ +L+N EK+E + +LNEQAKVF+N LRRQM K +K+ ILL V++L+ L+ + V+ K +
Sbjct: 14 DNVKFLAIARATDKAVVATYMHSSDGKPNRGGDGDINTFKEMLGKVIRAPTWKSQVTPNGRHSLDCDPNKFHFTMDNDELVFAAITSKDYPIRLAFQMISAVQQEIVPKYGSKALTCREGGLDKDCAKAFANIASTFDDRTKVDKLSEVMHHVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLGVCAVLVLLILLAVLGVFKKSS 248
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A0P1ACV1_PLAHL (Vesicle-associated membrane protein 7b n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACV1_PLAHL) HSP 1 Score: 134 bits (338), Expect = 8.520e-34 Identity = 83/245 (33.88%), Postives = 135/245 (55.10%), Query Frame = 1
Query: 64 SPRAKKTRMAPNRVTYLGVVRFADRVTVAEYSPTEAN-------DGVVIKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
+P A + + + +L + R D+V VA Y T D V +E++S T V P R++ + HFT ++ V+A +T K+YP R+AF ++ +Q++ + K G K+LT +E L + C F+ + YDD VD+L+ V +V+ VKT+M +NIQ +L+N EK+E + +LNEQAKVF+N LRRQM K +K+ ILL+ +++L L+ + V+ K +
Sbjct: 2 APSAAAASLTRDNIKFLAIARATDKVIVACYMHTAGKPVRNGEGDMNVFREMLSKVIRAPTWKTQVTPNGRHSLDCDPNKFHFTMNNDELVFAAITSKDYPIRLAFQMISAIQTEIIPKFGSKALTCRENGLDKDCAKIFTAIAAGYDDRTKVDKLSDVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLSVCAILVLFILLAVLGVFKKSS 246
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: W2QEA6_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QEA6_PHYPN) HSP 1 Score: 131 bits (329), Expect = 1.800e-32 Identity = 83/243 (34.16%), Postives = 133/243 (54.73%), Query Frame = 1
Query: 61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEY------SPTEANDGVV--IKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVY 747
A A + + + +L + R D+V VA Y P + V +E++S T V P R++ E HFT ++ V+A +T K+YP R+AF ++ +Q++ + K G K+LT +E L + C +F+ + YDD VD+L+ V +V+ VKT+M +NIQ +L+N EK+E + +LNEQAKVF+N LRRQM K +K+ ILL V++L+ L+ + V+
Sbjct: 2 APATAASASLTRDNIKFLAIARATDKVIVASYMHQSGGKPARGGEVEVNTFREMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEIVPKYGSKALTCRENGLDKDCAKAFAAIASGYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLGICAVLVLLILLAVLGVF 244
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: A0A225WZK3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZK3_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.610e-31 Identity = 84/246 (34.15%), Postives = 137/246 (55.69%), Query Frame = 1
Query: 61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEY-----SPTEA--NDGVVIKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLAFVIVILLIALIVPIAVYCKKN 759
A P A + + + +L + R D+V VA Y P+ N+ KE++S T V P R++ E HFT ++ V+A +T K+YP R+AF ++ +Q++ + K G K+LT +E L + C +F+ + YDD VD+L+ V +V+ VKT+M +NIQ +L+N EK+E + +LNEQAKVF+N LRRQM K +K+ ILL+ +++L+ ++ V+ K +
Sbjct: 2 APPSAAAASLTRDNIKFLAIARATDKVIVACYMHSGGKPSRGGENEMSTFKEMLSKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQTEVVPKFGSKALTCRENGLDKDCAKAFAAIAATYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRQLRRQMWWKNVKLTILLSICAILVLLIILAVSGVFKKSS 247
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: H3GMP4_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GMP4_PHYRM) HSP 1 Score: 127 bits (318), Expect = 7.550e-31 Identity = 80/226 (35.40%), Postives = 123/226 (54.42%), Query Frame = 1
Query: 61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEYSPTE----ANDGV----VIKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLA 696
A P A +A + + +L + R D+V VA Y + A G KE++ T V P R++ + HFT ++ V+A +T K+YP R+AF ++ +Q + + K G K+LT +E L + C +F+ + YDD VD+L+ V V+ VKT+M +NIQ +L+N EK+E + +LNEQAKVF+N LRRQM K +K+ ILL+
Sbjct: 2 APPSAASASLARDNIKFLAIARATDKVVVACYMHSSDGKPARGGAPEMNTFKEMLGKVIRAPTWKTQVTPNGRHSLDCDPNKFHFTMNNDELVFAVITAKDYPIRLAFQMISAIQQEIVPKYGSKALTCRENGLDKDCAKAFAGIAGTYDDRTKVDKLSEVMHHVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLS 227
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Match: G4YES5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YES5_PHYSP) HSP 1 Score: 132 bits (331), Expect = 2.120e-30 Identity = 83/236 (35.17%), Postives = 130/236 (55.08%), Query Frame = 1
Query: 61 ASPRAKKTRMAPNRVTYLGVVRFADRVTVAEY------SPTEANDGVV--IKELMSNP------DTFVEPRKRYTNEGQMFSIHFTADDRNRVYACVTDKEYPPRIAFALLEEMQSKFLTKVGDKSLTAKEGSLTRSCKSSFSDLCIKYDDVRNVDRLAAVQDKVEVVKTIMEDNIQQMLANEEKLEHIGANAENLNEQAKVFQNRSSALRRQMRCKAIKMWILLA--FVIVILLI 720
A P A + + + ++ + R D+V VA Y P + + KE++ T V P R++ E HFT ++ V+A +T K+YP R+AF ++ +Q + + K G K+LT +E L + C F+ + KYDD VD+L+ V +V+ VKT+M +NIQ +L+N EK+E + +LNEQAKVF+N LRRQM K +K+ ILL F++V+L+I
Sbjct: 2 APPTAASASLTRDNIKFMAIARATDKVVVACYMHSSDGKPARGGEAEMNTFKEMLGKVIRAPTWKTQVTPNGRHSLECDPNKFHFTMNNDELVFAAITAKDYPIRLAFQMISAVQQEVVPKFGSKALTCRENGLDKDCAKLFASIAAKYDDRTKVDKLSEVMHQVDGVKTVMHNNIQVVLSNTEKMEVVEQKTNDLNEQAKVFRNTGRKLRRQMWWKNVKLTILLTVCFILVLLII 237 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1172.1 >prot_S-ischiensis_contig1.1172.1 ID=prot_S-ischiensis_contig1.1172.1|Name=mRNA_S-ischiensis_contig1.1172.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=226bp MAPNRVTYLGVVRFADRVTVAEYSPTEANDGVVIKELMSNPDTFVEPRKRback to top mRNA from alignment at S-ischiensis_contig1:7922021..7925260- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1172.1 ID=mRNA_S-ischiensis_contig1.1172.1|Name=mRNA_S-ischiensis_contig1.1172.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3240bp|location=Sequence derived from alignment at S-ischiensis_contig1:7922021..7925260- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:7922021..7925260- >mRNA_S-ischiensis_contig1.1172.1 ID=mRNA_S-ischiensis_contig1.1172.1|Name=mRNA_S-ischiensis_contig1.1172.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1356bp|location=Sequence derived from alignment at S-ischiensis_contig1:7922021..7925260- (Schizocladia ischiensis KU_0333)back to top |