mRNA_S-ischiensis_contig1.1169.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1169.1 vs. uniprot
Match: D8LQ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ96_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 2.440e-14 Identity = 196/723 (27.11%), Postives = 300/723 (41.49%), Query Frame = 3
Query: 738 LSEDSSRGLPPPPPMPSSSLPRLASLKAYELTAEQLAVVDRERHLAADHIRRLNQALAGFLAFADLETVHVSLARAGGAQLPQHAPAHGASLDGSLLGASGGDAGSEPPPTSARTEGSTESKQQRARVKRLIVRVCGDKNRRALAQAWRQLCQHAAAAKAAAEGKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAGAAAEVEAAEVAA---RRT--------------RVKRLIVRVCGDKDRRAISQAWRRLCGHKAAAAATEAAAASEAAQLGVQRARVKRLICRICADKDRRAL-------SRAWR----QLSHCAASAAA---------------AEAAAE-------GNAAQVEVQRSRVKRLIIRLCAGKDRRALSVAWRQLSQHAATALAAEGAAESEAAQLEAQRARVKRLIIRLCAGKDQRALSLAWRQLSRHAAAAAAAEGAAESQTAQLEA-----QRARVKRLIIRLCAGKDQRALSLAWRQLSRHAAAAAAXEGAAESESAQLEAQRARVKRLIIRLCAGKDQRALSLAWRQLSRHAVQAATAEAATESETAQVEDQRTRVKRLIIRMCADMDRRALSRAWRKLSLHAAV-----GTVAQATDRGEAARRQVERARVRRLIIRVCTDKDRQALSRAMRQLSQHRLSAAATETAKESQATQLEAQQARLKRLIARLCHNRARQGLQRAWRQFCLHTA 2726
+SE SS GLP PP +PS LP + ++ Y LT +Q +D ER L +DH+RRLNQ LAG L++ ++ +H + Q AP+HGA++ S +A P S R ++RL+ RVC D+ +R + + W +LC AA+ + AEG S A A A+ EAA V A RT R K LI RVC ++DR ++ W RL H A + E AAA A + AR + + A AL R W ++ ASAAA AEAAA G+ +++ +VK++ + + RR + L AAT AA A S A ++E + A K + R + + ++ A Q R A + + + + +EA Q +K LI R+C +D+R+L +W +L HAA+ A + + +A EA R + + +RA ++ + V A + A E+E A E +R + R++ R+ D +RR L R+W +L HAA G A AT AAR VE +R TD + A + + S+ + E ++ R + R+ ++ R+ L R W + CLH A
Sbjct: 68 VSEVSSGGLPAPPLIPSGPLPAIGVIREYFLTGQQQHDLDHERRLTSDHMRRLNQVLAGHLSYLEVSNIHAEREKLQ-LQALASAPSHGAAVGYSASLNDSKNASGTPRGGSLRQN----------ILRRLMGRVCRDRAKRLIFRGWSRLCL--AASLSTAEGT-SAVATAAVRAARPEVMEKEAEEATETVENPSRAANVSAEVAIAREHAQREAASVLAAEHHRTIKDTEDGAREHQLRRTKMLITRVCRERDRASMFCGWNRLYLHAATLSTAEGAAA---AAVMADSARGRAMEEETGAAAGSTALVETPGKVPREWEHRLERMKRLGASAAATXXXXXXXXXXAQKEAEAAAASPRETAFGSKLMADLE-LKVKKIEQTVQEHQLRRV-----KGLGASAATTSAAR-ATRSTAMEMETEEATDKTEVSRRAEDEIEN-VAAAREQARRETARGSNSVAKLQHKITDMEAILREHQLRWIKILITRVCGDRDRRSLFRSWSRLCLHAASVGAID---DVSAAAAEAARVAKADAVEKQAPTPAERA-KVSEKGHEDSMVAADLEKRAEEAEKAVDEQRRQQTVRMVARVLRDRNRRLLFRSWGRLCSHAASLNAVEGASAAATPAVRAAR--VEAKEMRTAAAASSTD------------------AIEAKSSTERSREEEQEPKRLRATTTMLRVSKDKDRRLLFRGWSRLCLHAA 741 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1169.1 >prot_S-ischiensis_contig1.1169.1 ID=prot_S-ischiensis_contig1.1169.1|Name=mRNA_S-ischiensis_contig1.1169.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=892bp MAQEPPLTASSVESPPPGTPFDSLDLSPSAPAPGSGRPPLHGGVRASYDEback to top mRNA from alignment at S-ischiensis_contig1:7901068..7911123- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1169.1 ID=mRNA_S-ischiensis_contig1.1169.1|Name=mRNA_S-ischiensis_contig1.1169.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10056bp|location=Sequence derived from alignment at S-ischiensis_contig1:7901068..7911123- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:7901068..7911123- >mRNA_S-ischiensis_contig1.1169.1 ID=mRNA_S-ischiensis_contig1.1169.1|Name=mRNA_S-ischiensis_contig1.1169.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=5352bp|location=Sequence derived from alignment at S-ischiensis_contig1:7901068..7911123- (Schizocladia ischiensis KU_0333)back to top |