mRNA_S-ischiensis_contig1.1168.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1168.1
Unique NamemRNA_S-ischiensis_contig1.1168.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7898746..7900316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size585
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1168.1prot_S-ischiensis_contig1.1168.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7898746..7900316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.1509266-CDS-S-ischiensis_contig1:7898745..78988951622815361.1509266-CDS-S-ischiensis_contig1:7898745..7898895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7898746..7898895 -
1695739659.8779008-CDS-S-ischiensis_contig1:7898745..78988951695739659.8779008-CDS-S-ischiensis_contig1:7898745..7898895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7898746..7898895 -
1622815361.1663997-CDS-S-ischiensis_contig1:7899167..78993591622815361.1663997-CDS-S-ischiensis_contig1:7899167..7899359Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7899168..7899359 -
1695739659.8906395-CDS-S-ischiensis_contig1:7899167..78993591695739659.8906395-CDS-S-ischiensis_contig1:7899167..7899359Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7899168..7899359 -
1622815361.1853986-CDS-S-ischiensis_contig1:7899734..78998661622815361.1853986-CDS-S-ischiensis_contig1:7899734..7899866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7899735..7899866 -
1695739659.9000454-CDS-S-ischiensis_contig1:7899734..78998661695739659.9000454-CDS-S-ischiensis_contig1:7899734..7899866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7899735..7899866 -
1622815361.1972666-CDS-S-ischiensis_contig1:7900205..79003161622815361.1972666-CDS-S-ischiensis_contig1:7900205..7900316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7900206..7900316 -
1695739659.909571-CDS-S-ischiensis_contig1:7900205..79003161695739659.909571-CDS-S-ischiensis_contig1:7900205..7900316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7900206..7900316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1168.1

>prot_S-ischiensis_contig1.1168.1 ID=prot_S-ischiensis_contig1.1168.1|Name=mRNA_S-ischiensis_contig1.1168.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
MAATVAAAAAAAASVAGEEQRSLAAEQEAQKARFKRLVVRLCTGKERRAL
HAAWVQLRHGGARAAAVGQQAQLRRECATRLLLRHVAGRDRRALARGWHR
LTQQAEVTRAMAAAAKAAQVAAEAEATEQHEAAEQEAATARCRRLIIRLC
GNKDRQALSRAWRCLLPPPPAAAGQDAQASAVAGSGKGPRRSRRP
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mRNA from alignment at S-ischiensis_contig1:7898746..7900316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1168.1 ID=mRNA_S-ischiensis_contig1.1168.1|Name=mRNA_S-ischiensis_contig1.1168.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1571bp|location=Sequence derived from alignment at S-ischiensis_contig1:7898746..7900316- (Schizocladia ischiensis KU_0333)
ATGGCCGCCACTGTGGCGGCGGCCGCTGCTGCTGCGGCCTCAGTCGCAGG
AGAGGAGCAGCGGTCGCTGGCGGCGGAGCAGGAGGCACAGAAGGCCCGGT
TCAAGCGCCTGGTGCGTGGGTTAGCGCGCGTGGTTGCCGTGTTGCGTGGC
CCCGGCCCAGCCACAGCCACCCGCCCTGGGCTCTCTCGTAAGGATGCGGG
CCTTCTTCGCTCTGCATGTTGGTCCCAGCTCGTTGGCCGCATGCCAGCAT
TGGGCGGGTTTGGGCAGGTTTGCGTCCTCGCTTTCGCATCCTCTCCCGGT
ATAGGATCGCGCTCTTCCCCCCACTTCCTCCCCCTTCCACTGCTGCCCTG
GCCCGGTCCGCCGTAGTCTTGCACGACCCCCCCCCGCCCGACATGCACAC
TCCGGCTATTGACCTATCTCGCTGTCCCCCTCCTTGGCGGCCGCCGGCAG
GTGGTGCGGCTGTGCACTGGCAAGGAGCGGCGGGCCCTCCACGCAGCCTG
GGTACAGCTCCGGCACGGGGGCGCGAGGGCAGCGGCCGTGGGACAGCAGG
CCCAGCTGCGGCGGGAGTGTGCGACACGCCTGGTGAGCTGGGTTTGTCGA
CAGCGGGGGCTGGTCTGCAAAGATGAGGGGATTGTGTTGGGTGGGTGGGT
GGGTGGGTGGCGGCGGCACCGATGGCAGCAGTAGCGGCTGGCGGGTGGCT
GCGGTGGACTGCCTCGCTTCCCGCCCCGCTTGGCTCTTCCAGCCACCGTC
TCTACTTTCCTCACAATAGCTCTACACCTGCCTCGCTGACATGAGAAAAA
GTGGCCATAATGGCTCAATGGCGGGCAGAATCTGGTCGATGGCCACCCTG
CCCCCCCCCCCCTCCCTTGCCCCTTACACCTGCAACTGCATGCGTTCCTT
GCCCCCCCCCCCTTCCCTGCACCCCTTCCCCCTTGGCCCCTCCGCCCTTC
GCCGCAGCTCCTCCGGCATGTGGCGGGCAGAGACCGCCGCGCGCTGGCCC
GGGGATGGCACCGCCTCACCCAGCAGGCCGAGGTGACCCGTGCCATGGCT
GCCGCGGCAAAGGCTGCACAGGTGGCGGCGGAAGCGGAGGCCACCGAGCA
GCATGAAGCTGCGGAGCAGGAGGCGGCCACGGCACGCTGCAGGCGTCTGG
TGAGCCAGGCCTCGTTTGCCATGGGGGGGGGAGGGTTGCCGGCGGGGGCA
CGGGTAGAGTACGCCCTGCCCGTCTTGCTACTGTACTGTACCGTATTGCA
GAGTATGTGTACAGTTTGAAGCCATTCCAAGTACAGTAAAAGATATACTT
CGTCCTTCCAAGTACAGTACTCGAGTACAAGGAATATTCCACCCACACAT
GCGCTAAAAATGGGAGGCCCGCCTGCCCGCTCGCTCGCCCACCCGCCCAC
CCGCTTCCATCCCCTGGGCAGATAATCCGCCTGTGTGGGAACAAGGACAG
GCAGGCCTTGTCAAGGGCGTGGCGCTGCCTCCTCCCACCACCCCCTGCCG
CAGCAGGTCAGGATGCCCAGGCCAGTGCCGTCGCCGGCAGCGGCAAGGGG
CCCCGGCGCTCCCGACGACCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7898746..7900316-

>mRNA_S-ischiensis_contig1.1168.1 ID=mRNA_S-ischiensis_contig1.1168.1|Name=mRNA_S-ischiensis_contig1.1168.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig1:7898746..7900316- (Schizocladia ischiensis KU_0333)
ATGGCCGCCACTGTGGCGGCGGCCGCTGCTGCTGCGGCCTCAGTCGCAGG
AGAGGAGCAGCGGTCGCTGGCGGCGGAGCAGGAGGCACAGAAGGCCCGGT
TCAAGCGCCTGATGGCCGCCACTGTGGCGGCGGCCGCTGCTGCTGCGGCC
TCAGTCGCAGGAGAGGAGCAGCGGTCGCTGGCGGCGGAGCAGGAGGCACA
GAAGGCCCGGTTCAAGCGCCTGGTGGTGCGGCTGTGCACTGGCAAGGAGC
GGCGGGCCCTCCACGCAGCCTGGGTACAGCTCCGGCACGGGGGCGCGAGG
GCAGCGGCCGTGGGACAGCAGGCCCAGCTGCGGCGGGAGTGTGCGACACG
CCTGGTGGTGCGGCTGTGCACTGGCAAGGAGCGGCGGGCCCTCCACGCAG
CCTGGGTACAGCTCCGGCACGGGGGCGCGAGGGCAGCGGCCGTGGGACAG
CAGGCCCAGCTGCGGCGGGAGTGTGCGACACGCCTGCTCCTCCGGCATGT
GGCGGGCAGAGACCGCCGCGCGCTGGCCCGGGGATGGCACCGCCTCACCC
AGCAGGCCGAGGTGACCCGTGCCATGGCTGCCGCGGCAAAGGCTGCACAG
GTGGCGGCGGAAGCGGAGGCCACCGAGCAGCATGAAGCTGCGGAGCAGGA
GGCGGCCACGGCACGCTGCAGGCGTCTGCTCCTCCGGCATGTGGCGGGCA
GAGACCGCCGCGCGCTGGCCCGGGGATGGCACCGCCTCACCCAGCAGGCC
GAGGTGACCCGTGCCATGGCTGCCGCGGCAAAGGCTGCACAGGTGGCGGC
GGAAGCGGAGGCCACCGAGCAGCATGAAGCTGCGGAGCAGGAGGCGGCCA
CGGCACGCTGCAGGCGTCTGATAATCCGCCTGTGTGGGAACAAGGACAGG
CAGGCCTTGTCAAGGGCGTGGCGCTGCCTCCTCCCACCACCCCCTGCCGC
AGCAGGTCAGGATGCCCAGGCCAGTGCCGTCGCCGGCAGCGGCAAGGGGC
CCCGGCGCTCCCGACGACCGATAATCCGCCTGTGTGGGAACAAGGACAGG
CAGGCCTTGTCAAGGGCGTGGCGCTGCCTCCTCCCACCACCCCCTGCCGC
AGCAGGTCAGGATGCCCAGGCCAGTGCCGTCGCCGGCAGCGGCAAGGGGC
CCCGGCGCTCCCGACGACCG
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