mRNA_S-ischiensis_contig1.1164.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1164.1
Unique NamemRNA_S-ischiensis_contig1.1164.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A6H5KWQ1_9PHAE (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ1_9PHAE)

HSP 1 Score: 452 bits (1163), Expect = 1.610e-146
Identity = 244/530 (46.04%), Postives = 324/530 (61.13%), Query Frame = 1
Query:  145 ELERVLRAMGVYEDASRSNKRKASHTATFNPPRPDHVIRCRVGLA*NIENRVSVVARLPDLCQTVMETMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKD-WNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNPEVGARGPGWRCSSFFIGLAPGDVNQ--------LDLSPAWRDFIMKVQPF---EGRTAAMDVDIHIRRGTELPEFCFPEGQVRRPGNRLQP 1698
            EL++ L+AMG+YE+A    +R+A                                         V+  ++ LVK+WS ++A ++  GLD+  V +AT++ FGSY LGV TPDADID+L L P HC+RE FF+SF  +L     ++EL PV EA+ PV+KF   GV +D+LFCSL Y KLP   NV    HL  LD+ A   +LNG+RV+E+IL ++PNHE FR TLRA+KEWARRRGIYSNVLGCLGGVN+AI+V FV + +P+  P  L+ K F  + +WKWPN + LN   ++ +L    N T      L   WNP  + +D   LMPI+TPAYP MNSSYNVGEPQ+R+IR+E  RG  IT  +      W  LF R+DFFWRF  YVQVD+ A +A D+R+WFGW+ESRMR  +V +D    +EA PF N L NP +     G   +SFFIGL   ++ +        +DL+PAWRDF+M+V  +     R   M+VD+    G  LP+FCFPE QVRR   R++P
Sbjct:   30 ELKKFLKAMGLYENAEGRTRRQA-----------------------------------------VLRMLLNLVKEWSGKIAAEE--GLDKEEVSTATLKTFGSYHLGVHTPDADIDVLCLAPRHCSRESFFTSFCQILRNHTEIDELFPVPEAYTPVIKFKAQGVSIDMLFCSLHYPKLPRQCNVHVEEHLRYLDD-AGVRSLNGVRVAELILSLVPNHEAFRTTLRAVKEWARRRGIYSNVLGCLGGVNWAILVAFVVQRYPNASPSVLLTKFFLMYHRWKWPNHVSLN---ELQSLQE-TNATEGHPFPLHTVWNPVSNPRDKAHLMPIITPAYPAMNSSYNVGEPQMRLIREEFARGWRITKGISLGVANWANLFERSDFFWRFELYVQVDISARSAADHRLWFGWIESRMRSFLVCLDQIDMVEAYPFVNPLPNPYLTNAETGAVGNSFFIGLGFPEIAKGRSPAGVPVDLTPAWRDFMMRVDSWGDRRRRREGMEVDVKAVHGVHLPDFCFPEDQVRR---RMRP 508          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: D7FQE0_ECTSI (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE0_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 7.990e-141
Identity = 232/502 (46.22%), Postives = 306/502 (60.96%), Query Frame = 1
Query:  145 ELERVLRAMGVYEDASRSNKRKASHTATFNPPRPDHVIRCRVGLA*NIENRVSVVARLPDLCQTVMETMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNPEVGARGPGWRCSSFFIGLAPGDVNQ--------LDLSPAWRDFIMKVQPF---EGRTAAMDVDI 1617
            ELE+ L+AMG+YE+A  S +RKA                                         V+  ++ LVK+WS ++A ++  GLD+  V  AT++ FGSY LGV TPDADID+L L P HC+RE FF+SF  +L     ++EL PV EA+ PV+KF   GV +D+LFCSL Y KLP   NV    HL  LD+ A   +LNG+RV+E+IL ++PNH+ FR TLRA+KEWARRRGIYSNVLGCLGGVN+AI+V FV + +P+  P  L+ K F  + +WKWPN + LN   ++ +L   N            WNP  + +D   LMPI+TPAYP MNSSYNVGEPQ+R+IR+EI RG  IT  +      W  LF R+DFFWRF  YVQVD+ A +A D+R+WFGW+ESRMR  +V +D    +EA PF N L NP +     G   +SFFIGL   +V          +DL+PAWRDF+M+V+ +     R   M+VD+
Sbjct:   30 ELEKFLKAMGLYENAEGSKRRKA-----------------------------------------VLLMLLKLVKEWSGKIAAEE--GLDKEEVSPATLKTFGSYHLGVHTPDADIDVLCLAPRHCSRESFFTSFCQILRNHTEIDELFPVPEAYTPVIKFKAQGVSIDMLFCSLHYPKLPRLCNVHVQEHLRHLDD-AGVRSLNGVRVAELILSLVPNHQAFRTTLRAVKEWARRRGIYSNVLGCLGGVNWAILVAFVVQRYPNASPSVLLTKFFLMYHRWKWPNHVSLN---ELQSLQETNVTEGHPFPLHAVWNPVANPRDKAHLMPIITPAYPAMNSSYNVGEPQMRLIREEIARGWRITKGISLGIANWANLFERSDFFWRFELYVQVDISARSAADHRLWFGWIESRMRSFLVCLDQIDMVEAYPFVNPLPNPYLTNAETGAVGNSFFIGLGFPEVANGRSPSGVPVDLTPAWRDFMMRVELWGDRRRRREGMEVDV 484          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A836C8Y5_9STRA (Poly(A) polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y5_9STRA)

HSP 1 Score: 405 bits (1040), Expect = 9.370e-133
Identity = 218/463 (47.08%), Postives = 294/463 (63.50%), Query Frame = 1
Query:  133 QSAAELERVLRAMGVYEDASRSNKRKASHTATFNPPRPDHVIRCRVGLA*NIENRVSVVARLPDLCQTVMETMMILVKKWSAELATKKRLGLDEASVRS-ATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIA-MLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNPEVGARGPGWRCSSFFIGLA 1515
            +S A+LE+VL+A G +E A +  +R+                              SV+A L  + Q           +WS +L   +  G++E +V+S AT+R FGSY LGV TPDADID L+L P HC REDFF+SF    LA    V E+ PV EA+ PV+KF +  V VD+LFCSL++ +LP PL+V ++ HL DLD +   S LNG+RV+E+IL ++PN   FR  LRAIKEWARRRGIYSNVLGCLGGVN+AI+V FVC+ +P+  P  L+ ++F+ + KW WP PI++  T +  A       T   V     WNP+   +D   LMPI+TPAYP MNSSYNVGEPQLR++++EI RGL +T ++Q+    W ELF  +DFF+RF +YVQVDV+A N  D+R WFGW+ESR+R L + ++ PP+L A P+AN +      A GP   C+SFFIGL+
Sbjct:   37 ESTAQLEQVLQACGCFETAEQKARRE------------------------------SVIADLEAMAQ-----------QWSKDLGRSR--GIEEQAVQSVATLRTFGSYRLGVNTPDADIDCLLLCPRHCAREDFFNSFCRDYLATRDDVSEVFPVPEAYTPVMKFKMRDVPVDMLFCSLQHAQLPRPLDVQEDRHLRDLDAEGVRS-LNGVRVAELILQLVPNQTTFRTALRAIKEWARRRGIYSNVLGCLGGVNWAILVAFVCQKYPNAAPSTLLHRLFRLYFKWSWPMPILITPTREEPA----EGCTPHAV-----WNPKVDLRDRAHLMPIVTPAYPAMNSSYNVGEPQLRLLKEEIARGLELTEKIQEERSHWAELFEPSDFFYRFQHYVQVDVLADNPEDHRRWFGWIESRLRHLTLALERPPQLLAHPYANTIFQRVAAASGPPQLCTSFFIGLS 446          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A1V9YEI6_9STRA (Poly(A) polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEI6_9STRA)

HSP 1 Score: 343 bits (879), Expect = 1.360e-107
Identity = 193/450 (42.89%), Postives = 272/450 (60.44%), Query Frame = 1
Query:  325 LCQTVMETMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNP--EVGARGPGWRCSSFFIGL---APGDVNQ--LDLSPAWRDFIMKVQPFEGRTAAMDVDIHIRRGTELPEFC 1653
            L +  + T+  LV++W+ + A K  + L+  + R + VR FGSY LGV +P+ADID L L P HC R +FF +F + L   P V  +  V +A+VPV+KF + G+ +DLLF +L  + +P  L+VLD+ HL ++DEQ   S LNG RV+EMIL ++PN E FR TL A+K WAR RGIYSNVLG LGGVN+AI+V  VC+ +P  L   L+ K ++ + +W WPNPI+LN   D               L +  WNP+ + +D   LMPI+TPAYP MNSSYNV E  L +++ E     A  + ++ +   W ELF    FF R+ +++Q+DV A+ A+ + VWFGWVESR+R L   ++  P L+  PFA   D P  + GA G     SS FIGL    P    +  +DL+ A +DF   +  + GRT+ MDV +H +R  ELP + 
Sbjct:   60 LREKALGTVKSLVEEWAVDEAAKAGVTLEAPATRFSQVRTFGSYRLGVHSPEADIDTLCLMPRHCLRINFFQAFPSRLQAHPAVTGVQSVPDAYVPVIKFKVHGISIDLLFVTLALSAVPSDLDVLDSKHLVEVDEQGVRS-LNGCRVAEMILQLVPNLEQFRTTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPQSLAGPLLTKFYRVYHQWTWPNPILLN-RLDAPQ----------PELAIASWNPKLNPRDRGHLMPIITPAYPAMNSSYNVLECTLHMMKAEFRTAAATCVDIEMQSAPWEELFDDATFFDRWDHFLQLDVSAAPAQ-FAVWFGWVESRLRQLFSRLEQVPDLQVFPFARVFDLPPCDDGASG-----SSLFIGLNFTVPRGATRFSVDLTAAIQDFAALLDTWLGRTSDMDVTVHYKRRAELPPWA 491          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A067CCL2_SAPPC (Poly(A) polymerase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCL2_SAPPC)

HSP 1 Score: 335 bits (858), Expect = 1.480e-104
Identity = 189/454 (41.63%), Postives = 271/454 (59.69%), Query Frame = 1
Query:  331 QTVMETMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLD-NPEVGARGPGWRCS--SFFIGL---APGDVNQ--LDLSPAWRDFIMKVQPFEGRTAAMDVDIHIRRGTELPEFCFPEGQ 1668
            +  ++ +  LV++W+   A K  + L+E +   + +R FGSY LGV +P+ADID L L P HC R  FF +F + L   P V  +  V +A+VPV+KF L G+ +DLLF +L    +P  ++VLD  +L D+DE    S LNG RV+EMIL ++PN E FR TL A+K WAR RGIYSNVLG LGGVN+AI+V  VC+ +P  L   L+ K F+ + +W WPNPI+LN            + ++ D L +  WNP+ + +D   LMPI+TPAYP MNSSYNV E  L +++ E     A  + ++ + V W +LF  + FF R+ +++Q+DV+A+ A  +  WFGWVESR+R L   ++  P ++  PFA   D  PEV   G    CS  S FI L    P    +  +DL+ A +DF   V  + GRT+ MDV +H +R + LP +   + Q
Sbjct:   49 EKALDVVRGLVEEWATAEAAKLGVTLEEPATCFSQIRTFGSYRLGVHSPEADIDTLCLMPRHCLRTSFFQTFPSRLQEHPEVASVQSVPDAYVPVIKFKLSGISIDLLFATLNVAAVPVDIDVLDVKYLVDVDEPGVRS-LNGCRVAEMILQLVPNIEQFRTTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPQSLAGTLLTKFFRVYHQWTWPNPILLNRI----------DESLGD-LSIPTWNPKLNPRDRSHLMPIITPAYPAMNSSYNVLESTLAMMKSEFRSAAATCVDIEIQSVPWEDLFEDSTFFKRWDHFLQLDVLAATA-SFPAWFGWVESRLRQLFSRLEQVPDVQIFPFARVFDLPPEVLDEG----CSGGSLFIALNFTVPRGATRFSVDLTAAVQDFAALVDTWLGRTSDMDVTVHYKRRSALPSWVLTQTQ 485          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A7S2GC92_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC92_9STRA)

HSP 1 Score: 334 bits (856), Expect = 5.750e-103
Identity = 181/439 (41.23%), Postives = 263/439 (59.91%), Query Frame = 1
Query:  403 GLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFS----SFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLF-CSLRYTKLPHPLN-VLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLD------------NPEVGA--RGPGWRCSSFFIGL--APGDVNQLDLSPAWRDFIMKVQPFEGRTAAMDVDIHIRRGTELPEFC 1653
            G D AS  SA +  FGSYAL   +PDADID+L + P HCTR DFF     S  A L  +P V EL  V EA+ PV+KF + GV +D+LF C   +  LP P   +L + HL  LD+  +  +LNG RV+  +L ++P+ + FR  LRA K WAR RG+YSNVLG LGG+N+AI+V F+C+ +P  +P  L+ + F+ + +W+WP PI+L   ++      +           + WNP+ + +D   LMPI+TP+YP MNSSYNVGEPQLR +R+EI RG+ +T  ++     W+ELF+  +FF ++ +Y+QVDV A +A  +R WFGW ESR+R L++ +D PP ++A P A   +               V A   G G   +SF++ L  APG V Q DL+ +  D++ ++  ++ R   MD+ I+  R   LP +C
Sbjct:   28 GDDGASTLSAHLISFGSYALNCHSPDADIDVLCIAPQHCTRADFFGTGPGSLHARLVADPSVAELLAVPEAYTPVLKFRMRGVSIDMLFACMPAHKVLPSPPEAILRDQHLKGLDD-CTIRSLNGARVTRTLLTLVPDPDRFRTALRATKAWARARGVYSNVLGYLGGINWAILVAFICQRYPSAVPSTLLSRFFRVYHQWQWPAPILLKSIHEEHPEGMF----------CQVWNPKVYPRDRAHLMPIITPSYPEMNSSYNVGEPQLRSLREEIARGVELTFAIEQGKAVWSELFIGHNFFAQYQHYIQVDVSAHDAAAHRAWFGWCESRLRQLVLCLDQPPSVQAHPHAEFFEWTATRGSKERRPRSAVAATPEGGGVIGTSFYVALSFAPG-VRQADLTASISDWVYRMNMWDRRQPGMDLSINHVRAKNLPAYC 454          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A024TBD6_9STRA (Poly(A) polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBD6_9STRA)

HSP 1 Score: 327 bits (837), Expect = 2.950e-101
Identity = 177/452 (39.16%), Postives = 272/452 (60.18%), Query Frame = 1
Query:  331 QTVMETMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNPE-------VGARGPGWRCSSFFIGLA---PGDVNQ--LDLSPAWRDFIMKVQPFEGRTAAMDVDIHIRRGTELPEF 1650
            +  +E +   V++W+   ATK+ L +D  S+    +R FGSY LGV +P+ADID L L P HC+R  FF+SF  +L  +  V  +  + +A+VPV+KF ++GV +DLLF +L    +P  +++LD   L D+DE    S LNG RV+EMIL ++PN + FR+TL A+K WAR RGIYSNVLG LGGVN+AI+V  VC+ +P  L   L+ K F+ + +W WPNPI+LN   D            +++  L+ WNP+ + +D   LMPI+TPA+P MNSSYNV +  LR+++ E  +   + + ++ + + W ELFL + FF R+ +++++DV +S+   +  WFGWVESR+R L   ++    ++  PFA   D P          +   G   SS F+GLA   P +  +  +D + A ++F   +  +  RT+ MD+ +H  R T+LP +
Sbjct:   50 ENALELVGAWVEQWAQNEATKRGLVVDATSLTQ--IRTFGSYRLGVHSPEADIDTLCLAPRHCSRLGFFTSFPLLLKHQAQVTSVHSIPDAYVPVIKFQVLGVAIDLLFVALDVASVPEDIDLLDPKTLRDVDEPGVRS-LNGCRVAEMILQLVPNLDQFRLTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPQSLAGTLLTKFFRVYHQWIWPNPILLNNIMDDDGKH-------AELHHLQSWNPKLYPRDRLHLMPIITPAFPAMNSSYNVLDCTLRLMQAEFRQAATVCVDIELQSLPWEELFLESSFFNRWEHFLRIDV-SSDPAHFTSWFGWVESRLRSLFGRLEQMEDVDIAPFARFYDIPTDDQTDTATSSTSTGVTSSSCFVGLAFHLPDNAQRFSVDFTAAVQEFAAVLDLWPQRTSDMDLQVHYVRRTQLPRW 490          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: W4GGY7_9STRA (Poly(A) polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGY7_9STRA)

HSP 1 Score: 325 bits (833), Expect = 1.230e-100
Identity = 178/462 (38.53%), Postives = 267/462 (57.79%), Query Frame = 1
Query:  331 QTVMETMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELC-PVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNP--------EVGARGPGWRCSSFFIGLA---PGDVNQ--LDLSPAWRDFIMKVQPFEGRTAAMDVDIHIRRGTELPEFCFPEGQVR 1674
            +  +E +   V+ W+   ATK+ L +D A+ R   +R FGSY LGV +P+ADID L L P HC+R  FFSSF + L  +  V      + +A+VPV+K  ++GV +DLLF +L    +P  +NVLD   L D+DE    S LNG RV+EMIL ++PN + FR+TL A+K WAR RGIYSNVLG LGGVN+AI+V  VC+ +P  L   L+ K F+ + +W WPNPI+LN   D  A           +LGL  WNP+ + +D   LMPI+TPAYP MNSSYNV +  LR+++ E  +   + + ++ + + W ELF+ ++FF R+ +++++D+ +S+A  +  WFGWVE R+R     ++    ++  PFA   D P                      F+GLA   P +  +  +D + A ++F   +  +  RT+ MD+ +H  R  +LP +      V+
Sbjct:   50 ENALELVGDWVEHWAQAEATKRGLLIDGATTRLTQLRTFGSYRLGVHSPEADIDTLCLAPRHCSRLGFFSSFPSFLKQQSQVTAAVHAIPDAYVPVIKLEVLGVAIDLLFVTLDVASVPEDINVLDTNTLTDVDEPGVRS-LNGCRVAEMILQLVPNIDQFRLTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPHSLAGTLLTKFFRVYHQWIWPNPILLNNVMDDDA---------DQLLGLTSWNPKVYPRDRLHLMPIITPAYPAMNSSYNVMDSTLRLMQAEFRQAATVCVDIELQSLPWEELFVESNFFDRWEHFLRIDI-SSHASQFTAWFGWVECRLRSFFGRLEQMEDVDIAPFARFYDIPGDSDSTXXXXXXXXXXXXXXXXFVGLAFHLPDNAQRFSVDFTMAVQEFAAVLDMWPQRTSDMDLQVHYVRRNQLPSWIVRPSTVQ 500          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: W2RDI5_PHYPN (Poly(A) polymerase n=14 Tax=Phytophthora TaxID=4783 RepID=W2RDI5_PHYPN)

HSP 1 Score: 324 bits (830), Expect = 3.620e-100
Identity = 187/445 (42.02%), Postives = 261/445 (58.65%), Query Frame = 1
Query:  379 ELATKKRLGL---DEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNPEVGARGP--GWRC----SSFFIGL-------AP--GDVNQLDLSPAWRDFIMKVQPFEGRTAAMDVDI-HIRRGTELPEFCF 1656
            E A  + LGL    EA+V+   +R FGS  LGVQ+ +ADID L + P HCTR  FF     +L     V  L  + +AFVPV+K  + G+ VDLLF SL    +P  L++LD+  L  +DE AS  + NG+RV+E IL ++PN E FR TL A+K WAR RGIYSNVLG LGGVN+AI+V  +C+ +P+ LP  L+ + F+ +  W WPNPIML+         R +N      LG   WNP+ + +D   LMPI+TPAYP +NSSYNV    LRI++ E+ RG   T+ ++ +   WT+LF+   FF R  ++++V + A+NA D+  WFGWVESR+R L + ++  P +   PFA   D  E     P    +C    S  FIGL       AP  G  + +DL+   RDF +    +EGR   MD+ I H+ R +++PE+  
Sbjct:   59 EYALHEGLGLYSEAEAAVKRVQLRTFGSCRLGVQSCEADIDTLCVAPRHCTRTSFFEKAPILLEAASSVTGLRVISDAFVPVIKMQVDGIPVDLLFVSLDLDSVPEDLDMLDDQILRGMDE-ASVRSCNGVRVTERILQLVPNQERFRTTLIAVKHWARIRGIYSNVLGFLGGVNWAILVARICQFYPNSLPASLLSRFFRIYQMWTWPNPIMLD---------RVDNPL---NLGFSGWNPKINVRDRLHLMPIITPAYPALNSSYNVMASTLRILKAELGRGFDRTLEIETKKASWTKLFVAPVFFQRSKHFLRVQITANNAEDFDGWFGWVESRLRHLFLRLEALPDIRIHPFARFFDFVETKDESPESSSKCEVHTSWLFIGLKFPAPTAAPVTGATHNVDLTGVIRDFALYTDQWEGRHGGMDMQIDHVTR-SQIPEWVL 489          
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Match: A0A6A3E1X3_9STRA (Poly(A) polymerase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3E1X3_9STRA)

HSP 1 Score: 323 bits (827), Expect = 9.820e-100
Identity = 179/436 (41.06%), Postives = 254/436 (58.26%), Query Frame = 1
Query:  397 RLGLDEASVRSATVRPFGSYALGVQTPDADIDLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGVHVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDIMPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDELPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDWNPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMRVQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRGLMVNIDDPPRLEATPFANHLDNPEVGARGP--GWRC----SSFFIGL---APGDVN------QLDLSPAWRDFIMKVQPFEGRTAAMDVDI-HIRRGTELPEFCF 1656
            R G  EA+ R   +R FGSY LGVQ+ +ADID L + P HCTR  FF     +L   P V  L  + +AFVPV+K  + G+ VDLLF +L    +P  ++VLD+ +L  LDE +S  + NG+RV+E IL ++PN E+FR TL A+K WAR RGIYSNVLG LGGVN+AI+V  +C+ +P+ LP  L+ + F+ +  W WPNPIML+         R +N      LG   WNP+ + +D   LMPI+TPAYP +NSSYNV    L I++ E  +G   T+ ++ +   W +LF+   FF R  ++++V + A+NA D+  WFGWVESR+R L + ++  P L   PFA   D  E     P     C    S  ++GL   AP  ++       +DL+   RDF      +E R   MD+ I H+ R +++PE+  
Sbjct:   62 RFGESEAATRRVQLRTFGSYRLGVQSQEADIDTLCIAPRHCTRASFFEKAPILLEATPSVTGLQVISDAFVPVIKMKMDGIPVDLLFVALDLDSIPEDIDVLDDRYLRGLDE-SSVRSCNGVRVTERILQLVPNQEHFRTTLIAVKHWARVRGIYSNVLGFLGGVNWAILVARICQFYPNSLPASLLSRFFRIYQMWTWPNPIMLD---------RVDNPL---NLGFSRWNPKINVRDRLHLMPIITPAYPALNSSYNVMASTLHILKAEFGKGFNRTLEIETKKSSWAKLFIAPVFFQRSKHFLRVQITANNAEDFDGWFGWVESRLRHLFLRLEALPELRIHPFARFFDFVETKGVTPEGSTECEVHTSWLYVGLGFPAPDPISATDGTHDVDLTSVIRDFAYYTDQWEARHGGMDMQIDHVTR-SQIPEWVL 483          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWQ1_9PHAE1.610e-14646.04Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]
D7FQE0_ECTSI7.990e-14146.22Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]
A0A836C8Y5_9STRA9.370e-13347.08Poly(A) polymerase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A1V9YEI6_9STRA1.360e-10742.89Poly(A) polymerase n=1 Tax=Achlya hypogyna TaxID=1... [more]
A0A067CCL2_SAPPC1.480e-10441.63Poly(A) polymerase n=2 Tax=Saprolegnia TaxID=4769 ... [more]
A0A7S2GC92_9STRA5.750e-10341.23Polynucleotide adenylyltransferase n=1 Tax=Florenc... [more]
A0A024TBD6_9STRA2.950e-10139.16Poly(A) polymerase n=1 Tax=Aphanomyces invadans Ta... [more]
W4GGY7_9STRA1.230e-10038.53Poly(A) polymerase n=1 Tax=Aphanomyces astaci TaxI... [more]
W2RDI5_PHYPN3.620e-10042.02Poly(A) polymerase n=14 Tax=Phytophthora TaxID=478... [more]
A0A6A3E1X3_9STRA9.820e-10041.06Poly(A) polymerase n=2 Tax=Phytophthora TaxID=4783... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7878308..7886549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score421.4
Seed ortholog evalue5.8e-115
Seed eggNOG ortholog2880.D7FQE0
KEGG koko:K14376
KEGG Pathwayko03015,map03015
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004652,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019219,GO:0019222,GO:0030145,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031440,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1903311
EggNOG free text desc.interspecies interaction between organisms
EggNOG OGsCOG5186@1,KOG2245@2759
EC2.7.7.19
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPoly(A) polymerase, RNA-binding domain
Ec32 orthologEc-01_006460.1
Exons10
Model size1818
Cds size1479
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.6479633-UTR-S-ischiensis_contig1:7878307..78786461622815487.6479633-UTR-S-ischiensis_contig1:7878307..7878646Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7878308..7878646 +
1695739729.909387-UTR-S-ischiensis_contig1:7878307..78786461695739729.909387-UTR-S-ischiensis_contig1:7878307..7878646Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7878308..7878646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.6613507-CDS-S-ischiensis_contig1:7878646..78787721622815487.6613507-CDS-S-ischiensis_contig1:7878646..7878772Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7878647..7878772 +
1695739729.9261067-CDS-S-ischiensis_contig1:7878646..78787721695739729.9261067-CDS-S-ischiensis_contig1:7878646..7878772Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7878647..7878772 +
1622815487.6789937-CDS-S-ischiensis_contig1:7879177..78793241622815487.6789937-CDS-S-ischiensis_contig1:7879177..7879324Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7879178..7879324 +
1695739729.9373648-CDS-S-ischiensis_contig1:7879177..78793241695739729.9373648-CDS-S-ischiensis_contig1:7879177..7879324Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7879178..7879324 +
1622815487.6974483-CDS-S-ischiensis_contig1:7880566..78807031622815487.6974483-CDS-S-ischiensis_contig1:7880566..7880703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7880567..7880703 +
1695739729.9464939-CDS-S-ischiensis_contig1:7880566..78807031695739729.9464939-CDS-S-ischiensis_contig1:7880566..7880703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7880567..7880703 +
1622815487.7102199-CDS-S-ischiensis_contig1:7881587..78816931622815487.7102199-CDS-S-ischiensis_contig1:7881587..7881693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7881588..7881693 +
1695739729.9589438-CDS-S-ischiensis_contig1:7881587..78816931695739729.9589438-CDS-S-ischiensis_contig1:7881587..7881693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7881588..7881693 +
1622815487.7213528-CDS-S-ischiensis_contig1:7883066..78832591622815487.7213528-CDS-S-ischiensis_contig1:7883066..7883259Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7883067..7883259 +
1695739729.9706874-CDS-S-ischiensis_contig1:7883066..78832591695739729.9706874-CDS-S-ischiensis_contig1:7883066..7883259Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7883067..7883259 +
1622815487.733773-CDS-S-ischiensis_contig1:7883753..78838711622815487.733773-CDS-S-ischiensis_contig1:7883753..7883871Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7883754..7883871 +
1695739729.9797873-CDS-S-ischiensis_contig1:7883753..78838711695739729.9797873-CDS-S-ischiensis_contig1:7883753..7883871Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7883754..7883871 +
1622815487.7437518-CDS-S-ischiensis_contig1:7884372..78845231622815487.7437518-CDS-S-ischiensis_contig1:7884372..7884523Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7884373..7884523 +
1695739729.9886014-CDS-S-ischiensis_contig1:7884372..78845231695739729.9886014-CDS-S-ischiensis_contig1:7884372..7884523Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7884373..7884523 +
1622815487.7534869-CDS-S-ischiensis_contig1:7885240..78853391622815487.7534869-CDS-S-ischiensis_contig1:7885240..7885339Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7885241..7885339 +
1695739729.9982994-CDS-S-ischiensis_contig1:7885240..78853391695739729.9982994-CDS-S-ischiensis_contig1:7885240..7885339Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7885241..7885339 +
1622815487.7627501-CDS-S-ischiensis_contig1:7885792..78859481622815487.7627501-CDS-S-ischiensis_contig1:7885792..7885948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7885793..7885948 +
1695739730.0089219-CDS-S-ischiensis_contig1:7885792..78859481695739730.0089219-CDS-S-ischiensis_contig1:7885792..7885948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7885793..7885948 +
1622815487.7719653-CDS-S-ischiensis_contig1:7886303..78865491622815487.7719653-CDS-S-ischiensis_contig1:7886303..7886549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7886304..7886549 +
1695739730.0192757-CDS-S-ischiensis_contig1:7886303..78865491695739730.0192757-CDS-S-ischiensis_contig1:7886303..7886549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7886304..7886549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1164.1prot_S-ischiensis_contig1.1164.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7878647..7886549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1164.1

>prot_S-ischiensis_contig1.1164.1 ID=prot_S-ischiensis_contig1.1164.1|Name=mRNA_S-ischiensis_contig1.1164.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=493bp
METMMILVKKWSAELATKKRLGLDEASVRSATVRPFGSYALGVQTPDADI
DLLVLTPCHCTREDFFSSFIAMLAMEPGVEELCPVKEAFVPVVKFTLIGV
HVDLLFCSLRYTKLPHPLNVLDNIHLHDLDEQASTSNLNGLRVSEMILDI
MPNHENFRVTLRAIKEWARRRGIYSNVLGCLGGVNFAIMVGFVCRSFPDE
LPPFLVLKVFQWFMKWKWPNPIMLNVTYDVSALSRYNNRTISDVLGLKDW
NPRHHEQDAKDLMPILTPAYPRMNSSYNVGEPQLRIIRQEITRGLAITMR
VQDRGVEWTELFLRTDFFWRFSYYVQVDVMASNARDYRVWFGWVESRMRG
LMVNIDDPPRLEATPFANHLDNPEVGARGPGWRCSSFFIGLAPGDVNQLD
LSPAWRDFIMKVQPFEGRTAAMDVDIHIRRGTELPEFCFPEGQVRRPGNR
LQPYGQTAPGSGGNPASRGGGGGGGSGGSSGGDGGGPGGGDGD
back to top

mRNA from alignment at S-ischiensis_contig1:7878308..7886549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1164.1 ID=mRNA_S-ischiensis_contig1.1164.1|Name=mRNA_S-ischiensis_contig1.1164.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8242bp|location=Sequence derived from alignment at S-ischiensis_contig1:7878308..7886549+ (Schizocladia ischiensis KU_0333)
CCTCAACAAAGACAAAATAGAGGGGGTATTTGAGGTATCCCCTGCCCTTT TCGTAGAGGAGAGGAGTTACTGGGCGGTATGGCCCCGACCGCGCCTGCCC CTCCTGGCCCTGGCCCGGTAATCACGCCCGAGCAGAGTGCGGCCGAGCTT GAGAGGGTCCTCCGCGCCATGGGCGTCTACGAGGACGCATCGAGGTCCAA CAAGCGCAAGGCAAGCCACACCGCGACCTTCAATCCCCCACGTCCCGATC ATGTCATTCGCTGCCGTGTCGGGCTGGCATAAAATATTGAAAACCGGGTT TCCGTTGTCGCCCGCCTCCCCGATCTCTGCCAGACTGTGATGGAAACGAT GATGATCCTCGTGAAGAAATGGAGCGCTGAACTGGCGACGAAGAAGAGGC TCGGGCTCGATGAGGCCTCTGTCCGATCCGCCACCGTTCGGCCGTTCGGG TCCTATGCCCTCGGGGTGAGCTGCGTCCTGCCCATTGATGGGCTGGCTCC ATGTGGAGCTAAACTAGCTCTAGTCGAATGGATCGTGAACCACGGTCACC GCGGCCACAGTCACGACATTTTCTGATGCTGACACTCAGTGTCACTCCAG CGAGTCAGTAACCGCGGTAAAAAGAACATGAACTTGCTGGAGCTTGACTG TGGGATACACAACCGAACACCGATGCCGGTCCCAACACCTGGCTGTTGGC TCGGCACTGGTCCTGCCCAGAATCCCCATCACCTTGTTACGTGCTTCCCT GCTCTTTACTACTCGTACAAGTAGAGAGTGCCTGACTTGCAGCATTCAGT GCCCCTTCAGCGCCCCGACGCCCGTCTCTGGTGTTTCCCGCCCTGCTTGT ACCCCTCCTACACTCTTAAGGTTCAAACGCCGGACGCGGACATCGACCTG CTGGTGCTGACTCCCTGCCACTGCACCCGCGAAGACTTCTTCTCGTCCTT CATCGCCATGCTTGCCATGGAGCCCGGGGTGGAGGAGCTCTGCCCTGTGA AGGAGGCCTTTGTGCCGGTGAGCTTGAGTGCGTGCTTGTGCGCGCATGTG TGTTGTGTATATGCTCACCCAACTGTGCTGGCGCGCCTTGTCACGGTGAC GGTGACAGGCGAGATTTTGATGGCGGGTGACAGGGTTGGGGGGACACTAG CAGATATGTCGGGCCCTTTTGACATGGAGAACCCAATCGAGTGGAATGAT CGACAACCTCCACAGTACTCTACTTCCTCCAAGTACTCGCAATTCATACT CTTGTGTACCGTTGTGAGTACTTCCAAGTACACATCAGACCATTGTGCCC GTACTTGGAAGCCAGAGTGGAGTCTATCTACTTGTACGGTCAGATGATCC CACCACCCTCGGAACCAGGATTAAACAAGTATTTGCAAGGGAAACTCGGG CACGGGACGCGCCTCATGTTTCTTTTTCGGTCCGAGACCGTGCCGATACG GGCGTGTAGGATGTTGCGGGGATCACAGGGGTAGGGGGAACGGACCACCA AGTGTGGCGTGTGCGTAGAGGAGGATGAGACAGTGCAGCACATTGTGCTT GAGTGCCCCCACTACAGTTCCACCAGGATGACTCCACAGGCTACTCTCTC CGGATGTACCTGCACTGATACCCATACAAGCAGCTACAAAATCTTTCAAG TGCACCCACAGGAAAGCGGATTACATCGCTTCTGGATCCCTCATCTGAAA CTGCGATGTGGCCAGGGGAAACTCAGAGCAGATAGAGTCTGCGGTTCAAG ATTTTCTTGTGTCTGTGTGGGGTTCGCGGTGGACCGAGTAGCTAGGGTAG TAAATGGTGACCTTGGATTTCCCCCTCCATGCCCCGGCATGGCTGGGGAC CCCCCCCTCTGCTGAACCTCGGTCCGGCAGGGGAGGGGTCCCCACGCCCT GACACTCTCGAGTCAGAGGCGGGGGGGATATGGACCCAACCACTCCCCCG CCATGAGTGGGCGGGTGGCCCTCCCTCCCACCCTGGCTTGCCAGGGCCAG GAGGGAGATTGCTCCGTCTTCAACGGGGTGTGGTCAATTGCCTCGGGACT ACGGCAAGTACAACATGAGTACATATAATATATATACTTGGAAGCACTTG GAAGTTCTTCCGAAGCACTTCGTAGGAGGTACAGTAGTTCCTATCGCTTT GTTTGCCCCCGCTTGGAAGCAATCGTGTCCAAGTAGTTCAACTGCCTGTA CACACATGGAGCACTGTGCACTGTACTGTACTGTACTGTACGTCTACCCC GGGCGGCAGGTGGTGAAGTTCACCCTGATAGGCGTGCACGTGGACCTGCT CTTTTGCTCCCTGCGCTACACCAAGCTGCCCCACCCCCTCAACGTGCTGG ACAACATCCACCTTCACGACCTGGATGAGCAGGCGAGTACGTCGAAGTAC CACCCATTGCGCATATCGTGCGGGGCCACGGAAAGATTGAGGCAGGCGAT CAAGCCCCTCGGCCATCTGACTGCTTGCTGGCGATGGCGATGGTGGCTAT CGTGCCAGTGTCCCAATCCCTTGTAGTTCCCATAAATCGGGTCGGCGAGA GAGCAGCCATCCGCCACACTCCCAGTTTGCTCATTTTGCTCATGCTGGGG CGCCACTGCGGCTGTACTCGAATGTACCTCACGTGCAGTGTACTAGTGTA TTACTGTAGTGCCAAACCCCATGATTGTATGGACCCCAGGGGTAAAAGGG TCAAGGCCCGGCCCAGCAGTGTTCAGGCCCTTGAGCCCGGCCCGGTACTG GTGCTGTGTAGATCCGTGCAAGAAAGGCTTTTCACGCGCAGAGTGACAGC AACATATAGGCTGTCCCGCCCGGTGGCTTTCTGGGGAAGTGGGGGGGGGT TACGCCGAACTTGAAAGAGCACGTTGGCCGTCATGTCCGGGATAGATTTG AGTACAAATACGCATGTACTTGGACGCACTTACCCTGTGTGGAATAGGTA AGCTCTCCCATGACGGTCTAGGAGTACTACTGTAGGTACTTGCTCTAATA TAGCACGGTTAACTTTTTCGCGGGGTTGGAGGCGGAAAAGCTCAGGGGTA CAACAGGACGCTGTGCGCCGCGACCCGTCTGCACTGTGTATGTGTCCTGG TACTTGTGTGCTCACGTTGCGATAGGATTGCTGTAGTCCAGACACCATTG ACCACGCGCCGTCGGGGGCGGAGCAATCTGCACAGTACTGCCATACTCTA CAATACCTCATACTTGATGGGATTGGGACGTGATGGGCTGGCGCGCTGTG CTGTTGGCTTGGTTGGCAGGGCGTGCGGAGCCTGAACGGGTTGCGTGTGT CGGAGATGATCCTGGACATCATGCCCAATCACGAGAACTTCAGGGTCACT CTAAGGGCCATCAAGGAGTGGGCCAGGCGAAGGGGGGTGAGTGTCTCATC TCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTACTGGTATCTACGTAT CTATATATCTCTCCACTGTCTCTGTCACACACACACGCCTGCCCGTCCGC CAAACCACCCACCCACCACCCACTCACCCTTCCCAATGCACTTGCAGTGC TTGCACGGTACCTATCGAATACCGCACATAGATGTTGGTGCATGCATGTG TAAAGTGGTCTACTTAGAATTGCCGCCTTGTGCTTGCCGTGCCCTGCAGA GACCATTGGCATATTTGGATGGGGGTAGTTCGAAATACTACATTCGTACT GCAGCAGAGCTCTACACCAGTACTTAGAGTACCTTGTTGTCCATTTGGCC CCTTCCCTGACCAGACTCTCGCGGGCCACGGGGGGAGGGGTGGGGGGGGG GGTGGATCCCCCCTTCCCCCTGCCCTCGCTCACCAGGGAAGGGAAGGGGA CTGGATTGCTTCCGCCTCAGAAGAGGGTACTTCCAAGTGCTTCCATGTAC TGCTTGGTATGAAGTACTTTGAAGCGCTTGTGTCTACTGGTGTACCTGAC CTCAAACACAAACCGAGTAGTGCTATGCATACCAAGTCCTTCCAAGTACA AAGTATGTTACAAGTATTTCCCAAGTATGTCAGAAGTACTTCAAGTATCT TGGAGTGGACAGCAGGCTGGGGACCGAGCCTGATACACGGCCAGGTCCAC TGCACTGTAATAGTACTTCCAAGCGCTTTTTAGAAAAAGCATGCACTTCA CAAGTTGCACTAGTGCTGTAGTTTGACCTCACTTGGCTTACCAGAGCCGT ATCCACCACATTATAAGTAAATACTACAGTACAAGTATTGTACGCACTTG CAGTACTTATCGAACCAAGCGCGGGGTCAATGGTCTCGGGACTACGGCAA GCACCACGTGAGTACACATAGTATGTATGTATACCTCATACTGCACTACT AGTAGTTCAGGCGGGCACTGCTGGGGTGCGCGTGGGCCCAGTCTAAGTTA CGTGAAACATGTACTGTACTGTGTGCCGTACTTGGAAGTATGTACTGCGA AGTACTACTGTAGAGTACATATATGGCACCTCGATACTGTGTGTACTCGA GTACACAGCTGGCATCCCACCTGTCCTTCTGCGTGTGGCACAAGAGACTG ACTGCCCTTCGCCCTAATTTTGGCAACCCTGTGAGTGGAAGATGGGCTTC CGTTTTGGTCCCAACTCGGATATGATGGGGGCCCGTAGACTCGCTCGTTT CCAAGCCTACACAGGCAGATGTGCAGCCCTTTTAATGATCGTGATGGCAG TGCGGCAACCTCCTCTCTGGACCCGCTCAGCTGTTTTCGATTCCTCTCTA CCTACCCAGATCTACAGCAACGTCCTCGGCTGCCTGGGGGGGGTAAATTT CGCCATCATGGTGGGGTTTGTCTGCCGGAGCTTCCCGGACGAGCTACCGC CCTTCCTGGTGCTCAAGGTCTTCCAGTGGTTCATGAAGTGGAAATGGCCC AACCCCATCATGCTCAACGTCACCTACGACGTGAGTGCACTCAGCAGATA CAGTACAGCACAGTACAGTGGACTTCAACTTTGGCAATGGCACACTAAGT GCAGTACGAGTACAGTTCAGTGTTGACTTGAGTGAGGCAGCACACTGTAC TGCACTGTAGCGCACTGTAGGAGTTTATGGCGGTATGGAGGGCACGTCTG CCTGCGGTTCCATCCACAGAACGGCAGTGACACAATCACATCGTGCTCGA CAACGCCTACGTCGTATTGTGAGCGGCGGCCGTCAAGTCAAAGACGGCGC GCCTATCCCGCATTAAAAAAATGTAGCACCCAAGTGAGGTATAGAAAACT TCAGTATGGCGACGTTTACTACTCGAGTGGTGCAGTAAGTGGGGGTCACA CTGCTTCTGCTGCCGGACGTGCGGGTGCTCTTGTACGTTGCCACCCTACC TCTGTCCCACGCCGTTTGGTGGTTTTCAGTACGAGCGTGCGCACGCTCAC GACACCCGTATGAACGTGTGTGTGTGTGTGTGGCACGTGCAGCAAGACAA CAGGACCATCAGCGACGTGCTTGGACTGAAGGACTGGAATCCCAGGCACC ACGAGCAGGATGCCAAGGACCTGATGCCCATCCTCACGCCTGCCTACCCC CGGATGAACTCCAGGTCAGTCAATATACATACATCTACGGGCTTTTGTTG TGGCCCCGTTTGTTTCTTCCTCTCTTTCTCTCTCTCTCTCTAGTAGACAC GGAAGGGTAGGCCTTCCGTAGACATCTGTGGACATGGCTGAGAGTTACTT GTCATACGAGCAAATGCCACATGAACTGATACAAAACGCTAGTCGTGCGG AGGACGCCGCTGTGATGGATGAGGCTTTGCGACGTAGGGAGCGGGATGTT GTACTGTACAGCACAGTACTGTACTGCACTGTATTCTGCTCCAAATTACT CTACAGTACTACTGTACGAGTACAGTGGCAGTGCTGTAGTCCGGGTGCCA CGATTGCCCCAAGCGAGAAGACGGGGCTTTTGGCGATACACATGTGCTAC GGGCGAGACGCCGCGAACCCCTGAGCCCATATGGCCGGCTCAAATACTTG TGTACTTGCCACCCCGGCGTCCCGTTCTCTCTCGCCCCGCCCCACCCTCC CTATGCCCCCCCCAGCTACAACGTGGGGGAGCCGCAGCTGAGGATAATCC GCCAAGAGATAACCCGCGGGCTGGCAATCACCATGCGCGTGCAGGACAGG GGGGTGGAGTGGACAGAGCTGTTCCTGAGAACTGACTTCTTCTGGAGGTT CTCCTACTATGTACAGGTATTCTACTACTATGTATAGGTATTCTACTACT GTACTAGGTACACGTATTCTCCTACTATGTGCAGGTACAGCGCGCGTTTG TGTGTGGCATAGCTTGCGGTAGCTGTCTTGGGTGCGCTACAGTAGAGTAC AGCACTTCTGGAACGGGTGTATTTCTTACAGTTATATTGTGCTTCGAAGT ACCTCCCCTTCCCCGCACAAATTTCCCCTGGCAAGCTAGGGAAGGGCCAC TGCTGAGGTCTCTAGTGACGTGGCCCGCACCTCGCCCCGTGTTGTTCCTC ACAATACTTGCAAGTAAGCACACTCTGCGTAGCAGGCGCGACAGGGCCCA ATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACTCGTACATATATAT ATATATACTCGAGTACTCGTAATGTACTTCAAGTACTTGTATCGTACTTG TAGGAAGTACTCCCAACGTGGGGGAGTGAAAAATACGCAAGAAGCGCGTT GCGGGCCCCTTGCCCAAATTGCCACCTCGCCATAGGCCCTTGTTTCACAT GCAGGGCAGAATAGCCAAGGAGATGCTTTCCAAGTCTGCAACCTTAACCC TAGCCTGGCGAGTTTTCCTCCCACCAGCCAATGGCAGCCATGCATGCCCC TCCTATTGTGCGAGCCCCCCTGCATGTTAGCCCTAACCCAAGCCCTAGCC CCAGTCCTGACCCTGACCCTGGCTGTGCAACAGGTGGACGTCATGGCCTC CAACGCACGTGACTACCGCGTGTGGTTTGGGTGGGTGGAGTCTCGCATGC GAGGCCTGATGGTCAACATCGACGATCCCCCGGTGAGTGCCGCTCAACCA CCGCCTCCTGCAATCAACTAGTGCCAAGCGGCGGTCGGCCCTTGGGCAGA CTGCTCAATACATAGAGGAGGTATGTCTCCCCTCAGCTGCATGGCCGCCA AACGCAAAAACAGCGGGAAAATGGGGCTGGAGTTGCTACTGAACCGCTCG TTGCAGACAATTAGGGTATACCCGAGCCCTCCCCCTACTCTATCTCTAGC CATACGTGCAGGTTTGGGGCGTTTCAATGTATCAAGTATTGTCGTGACTT GCAGACTCGACCGCCCCTTGCAACCTCTGCACCTTGCCTGGTGGTAGCGT TTCTATACTACTAGTACTGTAGCAAGTGCTTGGAAGCACCAAGTACCAAG TACAGTAGTATGGTGTAGTTGCTGCACTCTCTCATGCAGCACAGACAAAC TTTGCTTGCACACAATGGTCTCCCCGCCCCGACAGAGGCTGGAGGCCACG CCATTTGCAAACCACCTGGACAACCCGGAGGTGGGCGCAAGGGGACCTGG CTGGCGGTGCAGCAGCTTCTTTATTGGCCTGGCGCCGGGCGACGTCAACC AGTTGGACCTCAGCCCCGCCTGGCGAGATTTTATCATGAAGGTGAGGGTC GGACCCGCAGCCGCCCCCCTGCACAGCTGCCGCCGCTGCTGCTCGAGCAA AGATCCTACTGTAAAATGTGCGCGCCATTGCAGATATCGTACGTGTTCTC AGTGAGAACATGAACCTGATCGTTGCTTTTTGGGCGATATACCGTGTGGC GGGGCTAGTGCCTGTCGCGATTGACTCTCCTTCTACTGTTGGGTTTGATG GAGTGATCAGTGCATACGCCCCTAGCGTACCTTCCTCGCGCTGTACTTGC GCAGTATATGTCATTCGAGTACATGCACTTTTACATAGTTCGCAGATAAA CGATTGCCACGCCGGCCGGTCGATCGGACTCGCACCCCGCCTGCAGGTGC AACCATTTGAGGGCCGCACCGCCGCCATGGATGTCGACATCCACATCCGC CGCGGGACTGAGCTGCCAGAGTTCTGCTTCCCCGAAGGCCAGGTGCGCCG CCCGGGCAACCGCCTGCAGCCGTACGGACAGACAGCCCCTGGCAGTGGCG GCAACCCCGCTTCTCGCGGTGGTGGTGGCGGCGGCGGGAGTGGGGGCAGC AGCGGCGGCGACGGCGGCGGGCCAGGCGGCGGCGATGGTGAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7878308..7886549+

>mRNA_S-ischiensis_contig1.1164.1 ID=mRNA_S-ischiensis_contig1.1164.1|Name=mRNA_S-ischiensis_contig1.1164.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2958bp|location=Sequence derived from alignment at S-ischiensis_contig1:7878308..7886549+ (Schizocladia ischiensis KU_0333)
ATGGAAACGATGATGATCCTCGTGAAGAAATGGAGCGCTGAACTGGCGAC
GAAGAAGAGGCTCGGGCTCGATGAGGCCTCTGTCCGATCCGCCACCGTTC
GGCCGTTCGGGTCCTATGCCCTCGGGATGGAAACGATGATGATCCTCGTG
AAGAAATGGAGCGCTGAACTGGCGACGAAGAAGAGGCTCGGGCTCGATGA
GGCCTCTGTCCGATCCGCCACCGTTCGGCCGTTCGGGTCCTATGCCCTCG
GGGTTCAAACGCCGGACGCGGACATCGACCTGCTGGTGCTGACTCCCTGC
CACTGCACCCGCGAAGACTTCTTCTCGTCCTTCATCGCCATGCTTGCCAT
GGAGCCCGGGGTGGAGGAGCTCTGCCCTGTGAAGGAGGCCTTTGTGCCGG
TTCAAACGCCGGACGCGGACATCGACCTGCTGGTGCTGACTCCCTGCCAC
TGCACCCGCGAAGACTTCTTCTCGTCCTTCATCGCCATGCTTGCCATGGA
GCCCGGGGTGGAGGAGCTCTGCCCTGTGAAGGAGGCCTTTGTGCCGGTGG
TGAAGTTCACCCTGATAGGCGTGCACGTGGACCTGCTCTTTTGCTCCCTG
CGCTACACCAAGCTGCCCCACCCCCTCAACGTGCTGGACAACATCCACCT
TCACGACCTGGATGAGCAGGCGAGTACGTCGAAGTGGTGAAGTTCACCCT
GATAGGCGTGCACGTGGACCTGCTCTTTTGCTCCCTGCGCTACACCAAGC
TGCCCCACCCCCTCAACGTGCTGGACAACATCCACCTTCACGACCTGGAT
GAGCAGGCGAGTACGTCGAACCTGAACGGGTTGCGTGTGTCGGAGATGAT
CCTGGACATCATGCCCAATCACGAGAACTTCAGGGTCACTCTAAGGGCCA
TCAAGGAGTGGGCCAGGCGAAGGGGGCCTGAACGGGTTGCGTGTGTCGGA
GATGATCCTGGACATCATGCCCAATCACGAGAACTTCAGGGTCACTCTAA
GGGCCATCAAGGAGTGGGCCAGGCGAAGGGGGATCTACAGCAACGTCCTC
GGCTGCCTGGGGGGGGTAAATTTCGCCATCATGGTGGGGTTTGTCTGCCG
GAGCTTCCCGGACGAGCTACCGCCCTTCCTGGTGCTCAAGGTCTTCCAGT
GGTTCATGAAGTGGAAATGGCCCAACCCCATCATGCTCAACGTCACCTAC
GACGTGAGTGCACTCAGCAGATACAATCTACAGCAACGTCCTCGGCTGCC
TGGGGGGGGTAAATTTCGCCATCATGGTGGGGTTTGTCTGCCGGAGCTTC
CCGGACGAGCTACCGCCCTTCCTGGTGCTCAAGGTCTTCCAGTGGTTCAT
GAAGTGGAAATGGCCCAACCCCATCATGCTCAACGTCACCTACGACGTGA
GTGCACTCAGCAGATACAACAACAGGACCATCAGCGACGTGCTTGGACTG
AAGGACTGGAATCCCAGGCACCACGAGCAGGATGCCAAGGACCTGATGCC
CATCCTCACGCCTGCCTACCCCCGGATGAACTCCAGACAACAGGACCATC
AGCGACGTGCTTGGACTGAAGGACTGGAATCCCAGGCACCACGAGCAGGA
TGCCAAGGACCTGATGCCCATCCTCACGCCTGCCTACCCCCGGATGAACT
CCAGCTACAACGTGGGGGAGCCGCAGCTGAGGATAATCCGCCAAGAGATA
ACCCGCGGGCTGGCAATCACCATGCGCGTGCAGGACAGGGGGGTGGAGTG
GACAGAGCTGTTCCTGAGAACTGACTTCTTCTGGAGGTTCTCCTACTATG
TACAGCTACAACGTGGGGGAGCCGCAGCTGAGGATAATCCGCCAAGAGAT
AACCCGCGGGCTGGCAATCACCATGCGCGTGCAGGACAGGGGGGTGGAGT
GGACAGAGCTGTTCCTGAGAACTGACTTCTTCTGGAGGTTCTCCTACTAT
GTACAGGTGGACGTCATGGCCTCCAACGCACGTGACTACCGCGTGTGGTT
TGGGTGGGTGGAGTCTCGCATGCGAGGCCTGATGGTCAACATCGACGATC
CCCCGGTGGACGTCATGGCCTCCAACGCACGTGACTACCGCGTGTGGTTT
GGGTGGGTGGAGTCTCGCATGCGAGGCCTGATGGTCAACATCGACGATCC
CCCGAGGCTGGAGGCCACGCCATTTGCAAACCACCTGGACAACCCGGAGG
TGGGCGCAAGGGGACCTGGCTGGCGGTGCAGCAGCTTCTTTATTGGCCTG
GCGCCGGGCGACGTCAACCAGTTGGACCTCAGCCCCGCCTGGCGAGATTT
TATCATGAAGAGGCTGGAGGCCACGCCATTTGCAAACCACCTGGACAACC
CGGAGGTGGGCGCAAGGGGACCTGGCTGGCGGTGCAGCAGCTTCTTTATT
GGCCTGGCGCCGGGCGACGTCAACCAGTTGGACCTCAGCCCCGCCTGGCG
AGATTTTATCATGAAGGTGCAACCATTTGAGGGCCGCACCGCCGCCATGG
ATGTCGACATCCACATCCGCCGCGGGACTGAGCTGCCAGAGTTCTGCTTC
CCCGAAGGCCAGGTGCGCCGCCCGGGCAACCGCCTGCAGCCGTACGGACA
GACAGCCCCTGGCAGTGGCGGCAACCCCGCTTCTCGCGGTGGTGGTGGCG
GCGGCGGGAGTGGGGGCAGCAGCGGCGGCGACGGCGGCGGGCCAGGCGGC
GGCGATGGTGACGTGCAACCATTTGAGGGCCGCACCGCCGCCATGGATGT
CGACATCCACATCCGCCGCGGGACTGAGCTGCCAGAGTTCTGCTTCCCCG
AAGGCCAGGTGCGCCGCCCGGGCAACCGCCTGCAGCCGTACGGACAGACA
GCCCCTGGCAGTGGCGGCAACCCCGCTTCTCGCGGTGGTGGTGGCGGCGG
CGGGAGTGGGGGCAGCAGCGGCGGCGACGGCGGCGGGCCAGGCGGCGGCG
ATGGTGAC
back to top