mRNA_S-ischiensis_contig1.1162.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1162.1
Unique NamemRNA_S-ischiensis_contig1.1162.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 9.790e-57
Identity = 104/129 (80.62%), Postives = 112/129 (86.82%), Query Frame = 1 
Query:   28 RPPRGRGDRGGRFSRGGRSPGXXXXXXXXXXXGYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTG 414
            RPPRG   RGG   RG     XXXXXXXXXXX YDEGPP+EVVELG FVHA EGEM+YK+T+SMVPYFNAGAYLENKTKIGKVDEILGPIN + FTVKPD GVNATSF+DGDKV+IGP+KLLPMSRFTG
Sbjct:    3 RPPRG---RGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 164 bits (416), Expect = 4.180e-50
Identity = 83/123 (67.48%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:   52 RGGRFSRGGRSPGXXXXXXXXXXXGYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 420
            RGG   RGGR              GYDEGPP  VVELG F+H  EGEM+YK+T+ MVPYFNAGAYLENKTKIGKVDEI GP+N  +FTVKPD+GV ATSF+ GDKV+IG +KLLPMSRFTG G
Sbjct:    2 RGGGRGRGGR--------------GYDEGPPEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGG 110
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.200e-49
Identity = 72/98 (73.47%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:  127 YDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 420
            YD+GPP E+VELG F+H  E EM+YK+T+SMVPYFNAGAYL+NKTK+GKVDEILGP+N  +FTVKPD+GVNA+SF++GDK++IG +KLLP+SRFTGEG
Sbjct:   28 YDDGPPDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.370e-47
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:  124 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 420
            GY+EGPP EVVELGSF+H  EGEM+YK+ H+MVPYFNAGA+L++KTK+GKVDEI GPIN  +FTVKPD+GV+A SF+  DKV++  EKLLPMSRFTGEG
Sbjct:   38 GYEEGPPDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV)

HSP 1 Score: 157 bits (398), Expect = 3.650e-46
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:  124 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 420
            GYDEGPPA VVELG F+HA E EM+YK T+  VPYFNAG YLENKTKIGKVDEILG IN  +FTVKPD+GV+A SF+ GDKVYI P+KLLP+SRFT +G
Sbjct:   38 GYDEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.880e-44
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:  127 YDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 420
            ++EGPPA VVELG+F+HA E EM+YK T   VPYFNAG YLENKTKIGK+DEILG IN  +FTVKPDSGV A SF+ GDKVYI P+KLLP+SRFT +G
Sbjct:   40 FEEGPPATVVELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQG 137
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A3M6VHN5_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHN5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.810e-44
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:  133 EGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFT 411
            EGPPA V+ELGSFVHA E EM+YK T+  VPYFNAGA+LENKT+IGKVDEILG IN  +FTVKPD+GV+ATSFQ GDKV+I P+KLLP+SRFT
Sbjct:   42 EGPPAFVIELGSFVHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSATSFQAGDKVFISPDKLLPLSRFT 134
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: K8ZCA3_NANGC (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZCA3_NANGC)

HSP 1 Score: 149 bits (377), Expect = 9.100e-44
Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:  124 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTG 414
            GYDEGPP +VVE G+FVH VEGEML K+T+  +PYFNAG +LENKT++GKV+E+LGPIN   FTVKPD+GV+A SF+  DK+YIG +KLLP+SRFTG
Sbjct:   35 GYDEGPPEQVVEAGAFVHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTG 131
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.010e-43
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:  127 YDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 420
            ++EGPPA VVELG F+HA E EM+YK T   VPYFNAGA+LENKTKIGKVDEILG IN  +FTVKPD+GV A SF+ GDKVYI P+KLLP+SRFT +G
Sbjct:   38 FEEGPPATVVELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQG 135
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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A0W8CG70_PHYNI (H/ACA ribonucleoprotein complex subunit n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CG70_PHYNI)

HSP 1 Score: 149 bits (377), Expect = 1.400e-43
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:  133 EGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEGG 423
            EGPPA VVELGSF+HA E EM+YK T+  VPYFNAGA+LENKT+IGKVDEILG IN  +FTVKPD+GV+A SF  GDKVYI P+KLLP+SRFT + G
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSJ1_9STRA9.790e-5780.62H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr... [more]
A0A7S3USE8_HETAK4.180e-5067.48H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A6H5KV55_9PHAE1.200e-4973.47H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec... [more]
A0A7S2UZ93_9STRA3.370e-4772.73H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
T0QNK0_SAPDV3.650e-4674.75H/ACA ribonucleoprotein complex subunit n=2 Tax=Sa... [more]
A0A6A4XZY0_9STRA1.880e-4472.45H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A3M6VHN5_9STRA4.810e-4476.34H/ACA ribonucleoprotein complex subunit n=1 Tax=Pe... [more]
K8ZCA3_NANGC9.100e-4469.07H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A024U6J9_9STRA1.010e-4372.45H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap... [more]
A0A0W8CG70_PHYNI1.400e-4373.20H/ACA ribonucleoprotein complex subunit n=2 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7869845..7870400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue5.5e-36
Seed eggNOG ortholog112098.XP_008611150.1
Preferred nameGAR1
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K02866,ko:K11128,ko:K17103
KEGG ReactionR01800
KEGG Pathwayko00260,ko00564,ko01100,ko01110,ko03008,ko03010,map00260,map00564,map01100,map01110,map03008,map03010
KEGG ModuleM00093,M00177,M00179,M00425
GOsGO:0000154,GO:0000454,GO:0000723,GO:0001522,GO:0001650,GO:0001651,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016074,GO:0016604,GO:0018130,GO:0019438,GO:0022613,GO:0030097,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032200,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042592,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0051276,GO:0055035,GO:0060216,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.box H/ACA snoRNA binding
EggNOG OGsCOG3277@1,KOG3262@2759
EC2.7.8.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGar1 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-01_001890.1
Exons2
Model size425
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1162.1prot_S-ischiensis_contig1.1162.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7869869..7870400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.3795826-UTR-S-ischiensis_contig1:7869844..78698681622815487.3795826-UTR-S-ischiensis_contig1:7869844..7869868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7869845..7869868 +
1695739729.7481613-UTR-S-ischiensis_contig1:7869844..78698681695739729.7481613-UTR-S-ischiensis_contig1:7869844..7869868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7869845..7869868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.3937376-CDS-S-ischiensis_contig1:7869868..78700011622815487.3937376-CDS-S-ischiensis_contig1:7869868..7870001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7869869..7870001 +
1695739729.7651503-CDS-S-ischiensis_contig1:7869868..78700011695739729.7651503-CDS-S-ischiensis_contig1:7869868..7870001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7869869..7870001 +
1622815487.4106925-CDS-S-ischiensis_contig1:7870134..78704001622815487.4106925-CDS-S-ischiensis_contig1:7870134..7870400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7870135..7870400 +
1695739729.7776146-CDS-S-ischiensis_contig1:7870134..78704001695739729.7776146-CDS-S-ischiensis_contig1:7870134..7870400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7870135..7870400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1162.1

>prot_S-ischiensis_contig1.1162.1 ID=prot_S-ischiensis_contig1.1162.1|Name=mRNA_S-ischiensis_contig1.1162.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
MRPPRGRGDRGGRFSRGGRSPGRGGRFGGRGGRGYDEGPPAEVVELGSFV
HAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKP
DSGVNATSFQDGDKVYIGPEKLLPMSRFTGEGG
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mRNA from alignment at S-ischiensis_contig1:7869845..7870400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1162.1 ID=mRNA_S-ischiensis_contig1.1162.1|Name=mRNA_S-ischiensis_contig1.1162.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=556bp|location=Sequence derived from alignment at S-ischiensis_contig1:7869845..7870400+ (Schizocladia ischiensis KU_0333)
ATTGGGTTGTTTTGGGCGACTAGCATGAGACCTCCTCGCGGACGAGGAGA
CCGTGGCGGCCGTTTCTCGCGCGGGGGTCGTTCCCCAGGGCGTGGCGGGC
GCTTTGGCGGCCGTGGAGGTCGCGGTTATGACGAGGGTCCACCAGCGGAG
GTCGTGGGTGAGTAGCGTCAAGACGCCAATGTGTTGTTGCGCTCCGGTTA
TTTGACGCTGTGATCGGAACATCGCGGACACCATCACGGCAGCTTTCGAT
CTAACATAAATCCTCCGCCGTCCCCTGTCCGGCCGCGCAGAGCTGGGGTC
CTTCGTCCACGCGGTGGAGGGAGAAATGCTGTACAAGATGACCCACTCGA
TGGTCCCTTACTTCAACGCCGGGGCATACCTGGAGAACAAGACAAAAATC
GGGAAGGTGGATGAGATCCTGGGCCCCATTAACGCGGCCCTCTTTACGGT
CAAACCGGACTCCGGGGTCAACGCCACCTCCTTCCAGGATGGCGACAAGG
TGTACATTGGCCCGGAGAAGCTCCTGCCCATGTCGCGGTTCACGGGGGAG
GGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7869845..7870400+

>mRNA_S-ischiensis_contig1.1162.1 ID=mRNA_S-ischiensis_contig1.1162.1|Name=mRNA_S-ischiensis_contig1.1162.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig1:7869845..7870400+ (Schizocladia ischiensis KU_0333)
ATGAGACCTCCTCGCGGACGAGGAGACCGTGGCGGCCGTTTCTCGCGCGG
GGGTCGTTCCCCAGGGCGTGGCGGGCGCTTTGGCGGCCGTGGAGGTCGCG
GTTATGACGAGGGTCCACCAGCGGAGGTCGTGGATGAGACCTCCTCGCGG
ACGAGGAGACCGTGGCGGCCGTTTCTCGCGCGGGGGTCGTTCCCCAGGGC
GTGGCGGGCGCTTTGGCGGCCGTGGAGGTCGCGGTTATGACGAGGGTCCA
CCAGCGGAGGTCGTGGAGCTGGGGTCCTTCGTCCACGCGGTGGAGGGAGA
AATGCTGTACAAGATGACCCACTCGATGGTCCCTTACTTCAACGCCGGGG
CATACCTGGAGAACAAGACAAAAATCGGGAAGGTGGATGAGATCCTGGGC
CCCATTAACGCGGCCCTCTTTACGGTCAAACCGGACTCCGGGGTCAACGC
CACCTCCTTCCAGGATGGCGACAAGGTGTACATTGGCCCGGAGAAGCTCC
TGCCCATGTCGCGGTTCACGGGGGAGGGCGGCAGCTGGGGTCCTTCGTCC
ACGCGGTGGAGGGAGAAATGCTGTACAAGATGACCCACTCGATGGTCCCT
TACTTCAACGCCGGGGCATACCTGGAGAACAAGACAAAAATCGGGAAGGT
GGATGAGATCCTGGGCCCCATTAACGCGGCCCTCTTTACGGTCAAACCGG
ACTCCGGGGTCAACGCCACCTCCTTCCAGGATGGCGACAAGGTGTACATT
GGCCCGGAGAAGCTCCTGCCCATGTCGCGGTTCACGGGGGAGGGCGGC
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