mRNA_S-ischiensis_contig1.1156.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1156.1
Unique NamemRNA_S-ischiensis_contig1.1156.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A835Z0R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R4_9STRA)

HSP 1 Score: 303 bits (775), Expect = 3.200e-96
Identity = 161/244 (65.98%), Postives = 187/244 (76.64%), Query Frame = 2
Query:  365 MMMATGLRGDVTDKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFRLNRRYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPLETYGAYDSDEG-GGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIEE 1093
            MM ATG+RGD+ DKLGLNGRRDIDR+A IL  LV+ SFLSST+LI+ +PGPDIVRF+ASW++AF PY FL+LG+AKPALLQ  LV+ F +N  YRERL RHEAGHFL GYLCGMP+ESY+ADSVTNAV+FFP      Y SD     I E +LLRL  VSLGG+VAE + FG SEGGYADLMQL  LL   +++LS REQ+DR RFAAVMAH+YL TH  AL  L  A  R  SV  CIR IE+
Sbjct:    1 MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPA----FYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIED 240          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A7S4D6I6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6I6_HETAK)

HSP 1 Score: 246 bits (629), Expect = 1.430e-72
Identity = 148/348 (42.53%), Postives = 209/348 (60.06%), Query Frame = 2
Query:  224 GWSALESAMDSSNGTH--VRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLRG--DVTDKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFR-LNRRYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPL-------------------------------------ETYGAYDSD----------EG------GGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIEE 1093
            GWS LE AM SS      V  ++  M+  GD+ L+NST ++Y+R  VG + M T +RG  D+   LGL+G+ DID++A+IL A+++ S LSS T++Q +PGP+IVR+S +WL+AF PY +L+LGL+ PA+LQ  L+Q+FR ++  YRERL+ HEAGHFL GYL GMPV+SY AD+  NAV F+PL                                     + +   + D          EG      G ++ D L RL V SL GV+AE ++ G  EGGYADL+QLQ+ L   +++L+ ++Q++  R+ AV A T L   RA L AL++AF R  SV +C+RVIEE
Sbjct:   22 GWSTLEQAMSSSECQREDVVAIMEIMKSNGDINLWNSTFLYYQRYGVGDVRMLTRIRGEKDLIQTLGLDGKSDIDKIASILFAVIVGSILSSLTVLQNLPGPEIVRWSVTWLLAFAPYGYLALGLSFPAVLQRLLIQIFRAVDPAYRERLLYHEAGHFLVGYLVGMPVQSYSADAPINAVQFYPLAGLPQEIKQRSRNTEIPPESVKRNAKEEEEMSIEKLRQLWTKINQDPNGPTRRAVEEGAAIGRRGALSLDQLQRLTVTSLAGVMAEVVQLGEGEGGYADLVQLQNFLYFCEQRLTDQQQQEYVRWGAVQAFTLLEVRRAELAALVEAFRRGASVPECLRVIEE 369          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A7S0XV52_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XV52_HEMAN)

HSP 1 Score: 165 bits (417), Expect = 7.010e-43
Identity = 107/283 (37.81%), Postives = 163/283 (57.60%), Query Frame = 2
Query:  272 VRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLRGDVT-DKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDI-------VRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFRL-NRRYRERLVRHEAGHFLTGYLCGMPVESYRAD-SVTNAVSFFPLETYGAYDSDEGGGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIE 1090
            V + L   +  G+  ++N+T   +RR+  G++ M T  RG +  D +   G  D++ ++    A +  S L ST    AIP  D+        RF  +  +  TP+AFL +GL+ P LLQA L+Q  RL +  +R+RL+RHEAGHFL GY  G+P+  Y+AD ++ NA  FF      ++D+     ++ D +  L  VS+ GVVAE++ +    GGYADL QLQ  LS +   L+ +EQ++R R+ +V+A+T L TH  A  AL++   R ESV  C++VIE
Sbjct:   15 VMKALNDAKGAGEAAVWNNTQPMFRRVRQGEVRMLT--RGVIKEDTIDTRGDDDMEVLSTSFYATLATSMLLSTWASIAIPNMDLPFLRGSDTRFFVTIAIGSTPFAFLGMGLSLPGLLQAILIQARRLVSGEFRDRLIRHEAGHFLVGYCLGVPIAEYKADDAILNACQFFE----DSFDTGPARRLSHDQVDTLCAVSMAGVVAESITYEKGLGGYADLSQLQGFLSRATPILNDKEQQERVRWGSVLAYTVLRTHGEAFEALVECMGRGESVESCVKVIE 291          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A7S4KRX3_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KRX3_GUITH)

HSP 1 Score: 165 bits (417), Expect = 6.030e-42
Identity = 111/284 (39.08%), Postives = 164/284 (57.75%), Query Frame = 2
Query:  272 VRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLRGDVT-DKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPG--------PDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFRL-NRRYRERLVRHEAGHFLTGYLCGMPVESYRADS-VTNAVSFFPLETYGAYDSDEGGGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIE 1090
            V + L S++E   L +++S    YRR+ VG++ + T  RG V  D   L+G  D++ +     A +++S L ST     IP          D++R+  ++ +   P+AFL +GL+ P LLQ  L+Q+ R  ++ YRERL+ HEAGHFL GY  G+P+ +Y AD  + NAV FF        DS+E   I+ + L  L  VS  GVVAE + FG++ GGYAD  QLQ  L  S+ +L+ REQ++R R+  V A T L     +L+AL++A  R+ S+ QCI  IE
Sbjct:   92 VVDALNSLKERSQLSMWDSVPSLYRRVSVGEVRLLT--RGLVKEDTFDLSGNNDMEVLNVSFYATLLSSMLLSTLAACFIPEYPNLPFLQGDLLRYVVTFGLGSLPFAFLGMGLSVPGLLQLVLIQIRRAASQEYRERLLWHEAGHFLVGYCLGLPIAAYSADDPILNAVQFF--------DSEEDS-ISHEFLDVLCAVSTAGVVAEAIRFGDAIGGYADFSQLQSFLYRSRPRLNDREQQERVRWGCVAAFTILKNREESLKALIEAMSRKSSISQCILAIE 364          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A7S0V097_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V097_9CRYP)

HSP 1 Score: 157 bits (397), Expect = 4.010e-40
Identity = 110/281 (39.15%), Postives = 159/281 (56.58%), Query Frame = 2
Query:  251 DSSNGTHVRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLRGDVT-DKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDI-------VRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFR-LNRRYRERLVRHEAGHFLTGYLCGMPVESYRA-DSVTNAVSFFPLETYGAYDSDEGGGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRES 1063
            D   G  VR+ L   ++ G+  ++NST   +RR+  G++ M T  RG +  D +   G  D++ ++    A +  S   ST    AIP  DI       VRF  +  +  +P+AFL LGL+ P LLQA L+Q  R ++  +R+RLVRHEAGHFL GY  G+P+  Y A D++ NA  FF      A+D+     +T + +  L  VS+ GVVAE++ +    GGYADL QLQ  LS +   L  REQ+D+ R+ +V+A+T L TH  AL AL++A  R  S
Sbjct:   12 DGWTGQLVRKALNDAKQAGEATVWNSTQPMFRRVRQGEVRMLT--RGVIKEDTIDTRGDDDMEVLSTSFYATLATSMALSTWASIAIPNMDIPFLRGSDVRFFVTIAIGSSPFAFLGLGLSLPGLLQAILIQARRAVSGEFRDRLVRHEAGHFLVGYCLGVPIAEYAAGDAILNACQFFE----DAFDTPARR-LTHNQVDTLCAVSMAGVVAESLAYDKGLGGYADLSQLQGFLSRATPILDDREQQDKVRWGSVLAYTVLRTHGGALEALVEAMGRGAS 285          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: W7TKF4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.000e-39
Identity = 108/298 (36.24%), Postives = 157/298 (52.68%), Query Frame = 2
Query:  305 GDLRLFNSTVMFYRRMDVGQMMMATGLRGDVTDKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQ-LFRLNRRYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSF-----FPLETYGA----YDSDEGGG-----------------------ITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIEEAG 1099
            G LR +NS  + +  +    + +   +R  V   LG      ++RV + +  ++  S  S+ T +  +PGPDIVR+ A+  +   P+A++SLGL+ P +L     Q LF LNR Y+ERL+RHEAGHFL GYLCG+PV SY      NAV F     F  E   A     DS E G                        + +++L RL VVSL GVV+E + +G +EGG  DL QL  L +L+   +S REQ     +  + ++  +  +  AL ALM AF R ESVV C++++E+ G
Sbjct:  172 GFLRFWNSVPLEFFGVSRNDLRVYARMRERVEKALGFTASPAVERVESGIAIVMALSITSALTTLDKLPGPDIVRWFATSFLVSIPFAYISLGLSFPEVLMRAANQVLFALNREYKERLLRHEAGHFLVGYLCGLPVLSYSVSGRLNAVEFAQILSFAQEAAAAATVPQDSSETGPAMLPSKSGPVSREEAERWTPRGVLLKEELARLTVVSLAGVVSEYIAYGKAEGGGNDLSQLLALFNLADPAMSDREQERWLNWGVLQSYNMIRQNEKALVALMAAFERGESVVTCMQIVEQEG 469          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A7S3AC95_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC95_9RHOD)

HSP 1 Score: 155 bits (392), Expect = 7.270e-39
Identity = 103/279 (36.92%), Postives = 161/279 (57.71%), Query Frame = 2
Query:  272 VRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLRGDVTDKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFRLNRR--YRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPLETYGAYDSDE--GGGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIEEA 1096
             RELL  + E+GDL+ +N   +  R + + ++ M   L  D    LGL  +  ID   A    +  +S L+   L QA+   D+  FS S+L+     AFL++G   P LL A L+     N R  ++ERL+ HEAGHFL GYLCG+PV+ Y  + +T  V+ F     G + +++   G ++ DD+  L VV+L G  AE +++G +EGG ADL  LQ+LL  ++  +  +EQ+++TR+ A+MA+T L  + A   AL++A   ++SV  CI+ IE+A
Sbjct:   69 ARELLDGLSEQGDLKKWNRQKLSVRPVSIAELKMNARLDAD---SLGLTQKNTIDLKLASFAVIGGSSLLA--VLCQAVFSGDLAYFS-SYLIGGLSIAFLAIGSTAPGLLTA-LITTISANLRPDFKERLLLHEAGHFLAGYLCGVPVKKYDVNPITTGVTIFG----GKFLTEDVAQGRVSRDDVNALSVVALAGPAAEVIKYGQAEGGMADLNLLQNLLVRTKPPMLSKEQQEQTRWGALMAYTVLKKYSAEYEALVEAMKAKKSVADCIKAIEQA 336          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A7S2SMI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMI0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.110e-37
Identity = 84/172 (48.84%), Postives = 115/172 (66.86%), Query Frame = 2
Query:  260 NGTHVRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLR---GDVTDKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFRLNR-RYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPL 763
            +G   R +L+++RE+G  RL+NST +   R  V +  + T  R   GD+  KL ++G RD+DR+AA L A    SF  ++  +  +PGP+ +RF+  WL+ FTPY FLSLGLA P  LQ GL+Q+ RL    YR+RL+RHEAGHFL GYL G+PV SY A++V NAV F+PL
Sbjct:   14 SGETARSMLKALREDGQARLWNSTALVGSRR-VSEAELRTLARIPGGDLISKLNIDGGRDVDRIAAGLLATTGISFTLASQAVS-LPGPESLRFALVWLLTFTPYIFLSLGLALPGSLQTGLIQVQRLALPTYRDRLLRHEAGHFLVGYLIGLPVRSYSANAVANAVQFWPL 183          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A5J4YTJ7_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTJ7_PORPP)

HSP 1 Score: 153 bits (387), Expect = 5.950e-37
Identity = 102/286 (35.66%), Postives = 153/286 (53.50%), Query Frame = 2
Query:  245 AMDSSNGTHVRELLRSMREEGDLRLFNSTVMFYRRMDVGQMMMATGLRGDVTDK-LGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFR-LNRRYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPLETYGAYDSDEGGGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIEEA 1096
            A+D ++  +V   L  M+E+G L+ + S     R +   +M + T  R  VT K L   G  D   +     A++  S  S+  + Q +PGPD+VR++A++ V   PY FL  G++ P LLQ  L+   R  ++ +R RL  HEAGHFL GYL G+PV  Y+AD+V NAV F+  +   A    +    T + +  L ++SL GVV+E + F  + GGYAD MQLQ + + S   L  R  + + R+  V A+T L  + AAL  L         + +CI  IE+A
Sbjct:  185 AIDWTDRENVVSKLEEMKEQGLLKKYGSAQTLARPISFQEMQLLT--RRKVTPKTLDFKGEGDKSAITVSFFAVLALSISSALAIEQYLPGPDVVRYAAAFSVGGLPYVFLLFGISVPDLLQFALILARRTFSKEFRTRLAAHEAGHFLVGYLLGVPVREYKADAVMNAVQFY-FDFEEAQQDSKPLRFTHEQVDELAIISLAGVVSEILLFKQASGGYADFMQLQRVANRSVPPLEPRAVQAKVRWGCVRAYTLLQQNAAALEQLTAKMAVGRPLDECIAAIEDA 467          
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Match: A0A4D9DAM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.430e-35
Identity = 106/323 (32.82%), Postives = 160/323 (49.54%), Query Frame = 2
Query:  305 GDLRLFNSTVMFYRRMDVGQMMMATGLRGDVTDKLGLNGRRDIDRVAAILGALVIASFLSSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQ-LFRLNRRYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPLETY--------------------------GAYDSDEG------GGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSLSQKKLSGREQR----------------------DRTRFAA---VMAHTYLTTHRAALRALMDAFLRRESVVQCIRVIEEAG 1099
            G LR +NS  + +  +    + +   +R  V   LG N    ++RV + +  ++  S  S+ T +  +PGPDIVR+ A+  +   P+A++SLGL+ P +L     Q LF LNR Y+ERL+RHEAGHFL GYLCG+PV SY      NAV F  + ++                          G    +E       G + +++L RL VVSL GVV+E + +G +EGG  DL QL  L +L+   +S REQ                           F++   + ++  +  +  AL ALM AF R ESVV C++++E+ G
Sbjct:  130 GFLRFWNSVPLEFFGVSRNDLRVYARMRERVEKALGFNASPAVERVESGVAIVMALSIASALTTLDKLPGPDIVRWFATSFLVSIPFAYISLGLSFPEVLMRAANQFLFALNREYKERLLRHEAGHFLVGYLCGLPVLSYSVSGRLNAVEFAQILSFAQEAAAAATVPQDSTEIGPPMLPSLPGPVSREEAERWTPRGVLLKEELARLTVVSLAGVVSEYIAYGKAEGGGNDLSQLLALFNLADPAMSDREQERWLNCKEGREGGIXXXXXXXXXXXFHFSSGGVLQSYNMIRQNEKALVALMAAFERGESVVACMQIVEQEG 452          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0R4_9STRA3.200e-9665.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6I6_HETAK1.430e-7242.53Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0XV52_HEMAN7.010e-4337.81Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4KRX3_GUITH6.030e-4239.08Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S0V097_9CRYP4.010e-4039.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
W7TKF4_9STRA2.000e-3936.24Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3AC95_9RHOD7.270e-3936.92Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S2SMI0_9STRA1.110e-3748.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5J4YTJ7_PORPP5.950e-3735.66Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A4D9DAM4_9STRA9.430e-3532.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7834493..7837029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog55529.EKX38672
EggNOG OGs28PSE@1,2QWEW@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size1770
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1156.1prot_S-ischiensis_contig1.1156.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7835152..7836998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.7143493-UTR-S-ischiensis_contig1:7834492..78351511622815486.7143493-UTR-S-ischiensis_contig1:7834492..7835151Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7834493..7835151 -
1695739729.351285-UTR-S-ischiensis_contig1:7834492..78351511695739729.351285-UTR-S-ischiensis_contig1:7834492..7835151Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7834493..7835151 -
1622815486.748425-UTR-S-ischiensis_contig1:7836998..78370291622815486.748425-UTR-S-ischiensis_contig1:7836998..7837029Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7836999..7837029 -
1695739729.3825219-UTR-S-ischiensis_contig1:7836998..78370291695739729.3825219-UTR-S-ischiensis_contig1:7836998..7837029Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7836999..7837029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.7263212-CDS-S-ischiensis_contig1:7835151..78353911622815486.7263212-CDS-S-ischiensis_contig1:7835151..7835391Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7835152..7835391 -
1695739729.363693-CDS-S-ischiensis_contig1:7835151..78353911695739729.363693-CDS-S-ischiensis_contig1:7835151..7835391Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7835152..7835391 -
1622815486.737345-CDS-S-ischiensis_contig1:7836158..78369981622815486.737345-CDS-S-ischiensis_contig1:7836158..7836998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7836159..7836998 -
1695739729.3733695-CDS-S-ischiensis_contig1:7836158..78369981695739729.3733695-CDS-S-ischiensis_contig1:7836158..7836998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7836159..7836998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1156.1

>prot_S-ischiensis_contig1.1156.1 ID=prot_S-ischiensis_contig1.1156.1|Name=mRNA_S-ischiensis_contig1.1156.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=360bp
MVRTRAGWGVAAALAVLPLCRGFVPCGLTGTARSRRPSPLVTECTVCADA
QVAEARSTSPGSSSGWSALESAMDSSNGTHVRELLRSMREEGDLRLFNST
VMFYRRMDVGQMMMATGLRGDVTDKLGLNGRRDIDRVAAILGALVIASFL
SSTTLIQAIPGPDIVRFSASWLVAFTPYAFLSLGLAKPALLQAGLVQLFR
LNRRYRERLVRHEAGHFLTGYLCGMPVESYRADSVTNAVSFFPLETYGAY
DSDEGGGITEDDLLRLGVVSLGGVVAETMEFGNSEGGYADLMQLQDLLSL
SQKKLSGREQRDRTRFAAVMAHTYLTTHRAALRALMDAFLRRESVVQCIR
VIEEAGKDP*
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mRNA from alignment at S-ischiensis_contig1:7834493..7837029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1156.1 ID=mRNA_S-ischiensis_contig1.1156.1|Name=mRNA_S-ischiensis_contig1.1156.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2537bp|location=Sequence derived from alignment at S-ischiensis_contig1:7834493..7837029- (Schizocladia ischiensis KU_0333)
CGGTGCCACTGGACCACTATAGAGCTCTAGGATGGTGCGAACACGGGCGG GCTGGGGGGTGGCAGCGGCCCTTGCTGTTCTCCCGCTTTGCCGGGGGTTT GTTCCGTGCGGCCTGACTGGCACGGCGAGGTCCAGAAGACCGTCGCCGCT CGTCACAGAGTGCACCGTCTGTGCCGATGCACAAGTAGCAGAGGCTCGTT CCACCTCCCCTGGCTCCAGCTCTGGATGGAGCGCTTTGGAGTCCGCGATG GACTCGTCAAACGGAACCCACGTGAGGGAGCTGCTCCGGAGCATGCGGGA GGAAGGCGATTTGCGGCTTTTTAATAGTACCGTCATGTTCTATAGGCGAA TGGACGTGGGGCAAATGATGATGGCGACCGGTTTGCGGGGCGACGTCACC GACAAGCTGGGCCTCAACGGGCGACGAGACATTGACCGCGTTGCAGCTAT CCTCGGGGCGCTGGTCATCGCCTCGTTCCTTAGCTCAACCACCCTCATCC AGGCCATCCCCGGCCCGGACATTGTCCGTTTTTCCGCCTCGTGGCTCGTG GCGTTCACGCCCTACGCTTTCCTGTCCCTGGGCCTCGCCAAGCCGGCACT GCTGCAGGCCGGTCTGGTGCAGCTTTTTCGCCTGAACCGGCGGTACCGGG AGCGCTTGGTGCGCCACGAGGCGGGCCACTTTCTCACGGGCTACCTGTGC GGGATGCCCGTGGAGAGCTATCGGGCCGACAGCGTGACCAACGCCGTGTC TTTCTTTCCTCTCGAGACGTACGGGGCGTACGATTCCGATGAGGGCGGGG GCATCACGGAGGACGACCTCCTTCGCCTGGGAGTGGTGTCTCTTGGGGGA GTTGTGGCCGAGACAATGGAGGTGCGATTGGGGCGGCTTCGCGTGGCATG GCGTGGCGTATGGCTTTGATCTGCACGTGCACTATTTGTGACTTGTGCGC TTCCTACTGTGATGGTCGTTTATAGAGATACACGAATAACCCACACTGCA AAATTTACCACTGTATGAAGTTGTACCAGCTACTGCACCAGCTACAAGTG CAGTCTACTCGTACAGTTTCCAGTGGTTTGGTGTGCTCGAGTGAGTACGC ATGCAACTGTGGCACTCAAACTCTGTGCACTTGTACATGTGAGGCATGAT TAGACTTACGGCCATGCTATACGTCAAAGTAACTGTGTGAGGCGCTGGGT GGGACTTAGTAAAGGCTGTTGTGGCTGGCCGACAGTGCGCTGCCAGGACC GTGCCTGCCTCCCTGCCTGCCTGTATGTCCGCCCGCCCGCCCGCCTGCCT GCCTGCCTGCCTGTTTATCTGTCCATCCGCCCACCCGTACGCCCGCTTGT CTGCCTATCTGCCTCCCTGCCTCCCTCCCCGCCTGCCCCCCCGCCTGCCT ACCTGCGTTGCTGGCCTGCTGCCTGCCTCCCTCCCCGCCTCCCTGCCTGT CTTGCCTGTCGGCCCGCCTGCCTTGCCGCCTGCCCGCCCGCGTTGGTATA CTGCACACATTGTCAATTCGCAAGAACGACATGTCGTGTCCGGCTGTCAT GGCCCACCCCACATCCCGCAAACCCCACCCTAAACCCTGACCCAAGAGTC ACCGCCACCGCGCACCCGCTGCACGTCGTTCGCCACAGTTCGGGAACTCT GAGGGAGGCTACGCGGACCTTATGCAGCTGCAGGACCTGCTATCCCTGTC GCAGAAGAAACTGAGCGGGCGGGAGCAGCGTGACCGCACGCGCTTTGCCG CCGTCATGGCGCACACCTACCTGACCACGCACCGGGCGGCGCTGCGCGCG CTCATGGACGCCTTCCTGCGTCGCGAGTCCGTTGTGCAGTGCATACGCGT GATTGAGGAGGCGGGGAAAGACCCGTGAAGCCTCCTGGCCTTAGGCACCG AGAGGGTCGCTGGTACCGTACAGAAGCAAGCAAATGCTTACTAACTGTAG GTATGCTTACAGGACGTATACTCGTAGTTTACTCGTAATTTACTTGGCGC AATGGGAGGGTTGCTCCAAGCTCGGAAGAGGGTGCATGATCAGTGGTCCC TGGGCAGCTGCGGCAAGCACAACGTGAGCACATGTACTGTGCAGTCAAGC ACACTAGTTAACAATGATTTTCGGATTTTCGGATATCGACAACGGCTGAA CTTCTGCCCCGATCGCGCTGCAAATCGGCATGGCATGAGCCGGGGGCACG GGCAAGACAACCTCATCTCCTCGGCACCATGCTGTCGAAAACGGACGGCG AAGGTCCCCCTGCTATCGGGAAAAACGTGTTTGAACTATGTGGACTGACT GTTTGCAAGTAGTAAATGTGCACTCGGTCCTGTGCCTTGGTAGTGTAGCA AGAGCTTGGCGCAAGCGCTGACCAGCCGGCCAAGCACAGTACTGTACTGT AAGTAGCTTTGCATGTTCCGACGCACACCTTGTGTTTTTTTGTGCTTTCC ACTTGACGGCAGGCAGTCCCTGTACGTAACTAAACCGGCCTTTGGGGTTG CATATGTCAACACACTAAAGAGCTCCCCTTCCACTAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7834493..7837029-

>mRNA_S-ischiensis_contig1.1156.1 ID=mRNA_S-ischiensis_contig1.1156.1|Name=mRNA_S-ischiensis_contig1.1156.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2160bp|location=Sequence derived from alignment at S-ischiensis_contig1:7834493..7837029- (Schizocladia ischiensis KU_0333)
ATGGTGCGAACACGGGCGGGCTGGGGGGTGGCAGCGGCCCTTGCTGTTCT
CCCGCTTTGCCGGGGGTTTGTTCCGTGCGGCCTGACTGGCACGGCGAGGT
CCAGAAGACCGTCGCCGCTCGTCACAGAGTGCACCGTCTGTGCCGATGCA
CAAGTAGCAGAGGCTCGTTCCACCTCCCCTGGCTCCAGCTCTGGATGGAG
CGCTTTGGAGTCCGCGATGGACTCGTCAAACGGAACCCACGTGAGGGAGC
TGCTCCGGAGCATGCGGGAGGAAGGCGATTTGCGGCTTTTTAATAGTACC
GTCATGTTCTATAGGCGAATGGACGTGGGGCAAATGATGATGGCGACCGG
TTTGCGGGGCGACGTCACCGACAAGCTGGGCCTCAACGGGCGACGAGACA
TTGACCGCGTTGCAGCTATCCTCGGGGCGCTGGTCATCGCCTCGTTCCTT
AGCTCAACCACCCTCATCCAGGCCATCCCCGGCCCGGACATTGTCCGTTT
TTCCGCCTCGTGGCTCGTGGCGTTCACGCCCTACGCTTTCCTGTCCCTGG
GCCTCGCCAAGCCGGCACTGCTGCAGGCCGGTCTGGTGCAGCTTTTTCGC
CTGAACCGGCGGTACCGGGAGCGCTTGGTGCGCCACGAGGCGGGCCACTT
TCTCACGGGCTACCTGTGCGGGATGCCCGTGGAGAGCTATCGGGCCGACA
GCGTGACCAACGCCGTGTCTTTCTTTCCTCTCGAGACGTACGGGGCGTAC
GATTCCGATGAGGGCGGGGGCATCACGGAGGACGACCTCCTTCGCCTGGG
AGTGGTGTCTCTTGGGGGAGTTGTGGCCGAGACAATGGAGATGGTGCGAA
CACGGGCGGGCTGGGGGGTGGCAGCGGCCCTTGCTGTTCTCCCGCTTTGC
CGGGGGTTTGTTCCGTGCGGCCTGACTGGCACGGCGAGGTCCAGAAGACC
GTCGCCGCTCGTCACAGAGTGCACCGTCTGTGCCGATGCACAAGTAGCAG
AGGCTCGTTCCACCTCCCCTGGCTCCAGCTCTGGATGGAGCGCTTTGGAG
TCCGCGATGGACTCGTCAAACGGAACCCACGTGAGGGAGCTGCTCCGGAG
CATGCGGGAGGAAGGCGATTTGCGGCTTTTTAATAGTACCGTCATGTTCT
ATAGGCGAATGGACGTGGGGCAAATGATGATGGCGACCGGTTTGCGGGGC
GACGTCACCGACAAGCTGGGCCTCAACGGGCGACGAGACATTGACCGCGT
TGCAGCTATCCTCGGGGCGCTGGTCATCGCCTCGTTCCTTAGCTCAACCA
CCCTCATCCAGGCCATCCCCGGCCCGGACATTGTCCGTTTTTCCGCCTCG
TGGCTCGTGGCGTTCACGCCCTACGCTTTCCTGTCCCTGGGCCTCGCCAA
GCCGGCACTGCTGCAGGCCGGTCTGGTGCAGCTTTTTCGCCTGAACCGGC
GGTACCGGGAGCGCTTGGTGCGCCACGAGGCGGGCCACTTTCTCACGGGC
TACCTGTGCGGGATGCCCGTGGAGAGCTATCGGGCCGACAGCGTGACCAA
CGCCGTGTCTTTCTTTCCTCTCGAGACGTACGGGGCGTACGATTCCGATG
AGGGCGGGGGCATCACGGAGGACGACCTCCTTCGCCTGGGAGTGGTGTCT
CTTGGGGGAGTTGTGGCCGAGACAATGGAGTTCGGGAACTCTGAGGGAGG
CTACGCGGACCTTATGCAGCTGCAGGACCTGCTATCCCTGTCGCAGAAGA
AACTGAGCGGGCGGGAGCAGCGTGACCGCACGCGCTTTGCCGCCGTCATG
GCGCACACCTACCTGACCACGCACCGGGCGGCGCTGCGCGCGCTCATGGA
CGCCTTCCTGCGTCGCGAGTCCGTTGTGCAGTGCATACGCGTGATTGAGG
AGGCGGGGAAAGACCCGTGATTCGGGAACTCTGAGGGAGGCTACGCGGAC
CTTATGCAGCTGCAGGACCTGCTATCCCTGTCGCAGAAGAAACTGAGCGG
GCGGGAGCAGCGTGACCGCACGCGCTTTGCCGCCGTCATGGCGCACACCT
ACCTGACCACGCACCGGGCGGCGCTGCGCGCGCTCATGGACGCCTTCCTG
CGTCGCGAGTCCGTTGTGCAGTGCATACGCGTGATTGAGGAGGCGGGGAA
AGACCCGTGA
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