mRNA_S-ischiensis_contig1.1155.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1155.1
Unique NamemRNA_S-ischiensis_contig1.1155.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1155.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.520e-15
Identity = 91/275 (33.09%), Postives = 115/275 (41.82%), Query Frame = 1 
Query:  487 AEAVVDGLGPEGATRVLWGAPALLEDMPPEFFYRLAARQARADRARALGSDLLSQMAAQVWALGGGTAAAAPAGAWVPVGGEGGGSAAGSKNLCGLGPRMSWVACEELLAFFARGTDGEEVAAREPLPSALAGGALGDGGDDVLPSTMMTAVWMGRAAHAARXXXXXXXXXXXXXXXGEV----GVQDHGLDQQELQQDPA-----LLQDAARRLGLNLLLPGRSHLGVCKSDAA-CVLCGLPLPLAGPA----GAAATAAEVVPPCGHPYHALC 1269
            AEAV+DG+GPE    VL   P LLE +PP+FF  LA RQA   + RAL + LL Q  A +WA  G   A             G G    S +   LGPR++W+ACEEL +FF    D    A+  P  + L GG  G  G     S            H  R                 V    G  D GL +   +++P      L+      L LNL+LPG +H G     A+ C  CGL L   G A    G       V+  CG   H+ C
Sbjct: 1585 AEAVLDGVGPEATGDVLAACPHLLEGIPPKFFQDLADRQAALSQQRALEAALLHQATAAIWASRGRRRATV----------TGAGDTGDSSDASPLGPRLAWLACEELTSFFQ---DNANSASASPN-ARLLGGEPGSAGSSCAGSPP-------GLQHHHRATMEVFAAGIGGDNLSRVFNGSGGNDDGLFRSLRRKEPGSVSQGLVASMGVNLDLNLVLPGNAHRGAAFDPASPCGFCGLALSGGGVACDGGGEEGEGELVLCACGRGIHSRC 1838
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BLAST of mRNA_S-ischiensis_contig1.1155.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.590e-10
Identity = 85/274 (31.02%), Postives = 114/274 (41.61%), Query Frame = 1 
Query:  487 AEAVVDGLGPEGATRVLWGAPALLEDMPPEFFYRLAARQARADRARALGSDLLSQMAAQVWALGGGTAAAAPAGAWVPVGGEGGGSAAGSKNLCGLGPRMSWVACEELLAFFARGTDGEEVAAREPLPSALAGGALGDGGDDVLPSTMMTAVWMGRAAHAARXXXXXXXXXXXXXXXGEV----GVQDHGLDQQELQQDPA-----LLQDAARRLGLNLLLPGRSHLGVCKSDAA-CVLCGLPLP---LAGPAGAAATAAEVVPPCGHPYHALC 1269
            AEAV+D +GPE    VL   P LLE +PP+         A   + RAL + LL Q  A +WA  G     A           G G+  GS +   LGPR++W+ACEEL +FF    D    A+  P  + L GG  G  G    PS   +   +    H  R                 V    G  D GL +   +++P      L+      L LNL+LPG +H G   + A+ C  CGL L    +A   G       V+  CG   H+ C
Sbjct: 1052 AEAVLDAVGPEATGDVLAACPHLLEGIPPK---------AALSQQRALEAALLHQATAAIWASRGRRRTTA----------TGAGNKGGSSDASPLGPRLAWLACEELTSFFQ---DNANSASASPN-ARLLGGEPGSAG----PSCAESPPGL---QHHHRATTDVFAAGVGGDNLSRVFSGFGGNDDGLFRSLRRKEPGSVSQGLVATMGVNLDLNLVLPGNAHRGAAFNPASPCGFCGLALSGGAVACDGGGEGEGKLVLCACGRGIHSRC 1295
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF16_ECTSI1.520e-1533.09PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMZ7_9PHAE4.590e-1031.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7824069..7825917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1409
Cds size1407
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.6575308-CDS-S-ischiensis_contig1:7824068..78246441622815486.6575308-CDS-S-ischiensis_contig1:7824068..7824644Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7824069..7824644 +
1695739729.333609-CDS-S-ischiensis_contig1:7824068..78246441695739729.333609-CDS-S-ischiensis_contig1:7824068..7824644Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7824069..7824644 +
1622815486.6730196-CDS-S-ischiensis_contig1:7825086..78259171622815486.6730196-CDS-S-ischiensis_contig1:7825086..7825917Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7825087..7825917 +
1695739729.342131-CDS-S-ischiensis_contig1:7825086..78259171695739729.342131-CDS-S-ischiensis_contig1:7825086..7825917Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7825087..7825917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1155.1prot_S-ischiensis_contig1.1155.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7824069..7825917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1155.1

>prot_S-ischiensis_contig1.1155.1 ID=prot_S-ischiensis_contig1.1155.1|Name=mRNA_S-ischiensis_contig1.1155.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=469bp
AGSPDTGHGDEHGGAEASSSAASATATTAAAATLEGFARQHHQQQQAEEG
YGGAAVGRRGGGPSLSPRPRSCLGSSSRRGSVEVPRTVATVRALSERCHG
GGDGGGGSARRDRSLRGGSEAQSVPLSSRLSLSPLSPPRRRSLPSSGWLG
VGGGPGMSALELAEAVVDGLGPEGATRVLWGAPALLEDMPPEFFYRLAAR
QARADRARALGSDLLSQMAAQVWALGGGTAAAAPAGAWVPVGGEGGGSAA
GSKNLCGLGPRMSWVACEELLAFFARGTDGEEVAAREPLPSALAGGALGD
GGDDVLPSTMMTAVWMGRAAHAARAHEAAAAAAAMAATAGEVGVQDHGLD
QQELQQDPALLQDAARRLGLNLLLPGRSHLGVCKSDAACVLCGLPLPLAG
PAGAAATAAEVVPPCGHPYHALCGQQAVLQPPPCRQCLRERQRRGQRRLH
QQHLRRRDSPEELGHGWTE
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mRNA from alignment at S-ischiensis_contig1:7824069..7825917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1155.1 ID=mRNA_S-ischiensis_contig1.1155.1|Name=mRNA_S-ischiensis_contig1.1155.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1849bp|location=Sequence derived from alignment at S-ischiensis_contig1:7824069..7825917+ (Schizocladia ischiensis KU_0333)
GCTGGGTCTCCCGATACCGGGCACGGCGATGAGCATGGAGGCGCAGAGGC
ATCGTCATCTGCTGCCTCCGCCACCGCCACCACCGCCGCTGCTGCCACTC
TGGAGGGGTTTGCTCGACAGCATCATCAGCAGCAGCAGGCTGAGGAGGGC
TATGGTGGGGCAGCCGTAGGTCGACGCGGCGGTGGGCCTTCTCTGTCTCC
GCGGCCGCGGTCGTGCCTGGGGTCTTCCTCGCGGCGCGGGAGTGTGGAGG
TGCCAAGGACCGTGGCCACCGTTCGGGCGCTCTCCGAGCGTTGCCACGGC
GGCGGCGACGGCGGTGGCGGCAGTGCACGGCGTGACCGCTCATTGAGGGG
TGGGAGTGAAGCGCAGTCGGTGCCGCTGTCATCCCGGCTGTCGTTGTCCC
CTCTGTCGCCGCCAAGGCGGCGGTCTTTGCCGAGCTCCGGGTGGCTGGGG
GTCGGAGGAGGGCCCGGGATGTCGGCTCTGGAGCTGGCGGAGGCGGTGGT
GGACGGGCTGGGCCCTGAGGGGGCAACGCGGGTGCTGTGGGGGGCGCCGG
CGCTCCTGGAGGACATGCCGCCGGAGGTGTGTTCGTGTAGAGTACTTGGA
ATAGCTTGTATGAAGCAATTTGTGCGAGTAAATAGGTGCGCTTCGAAAGC
AAGTAAATCTACAGACTGTGCGTGCCACAGCCCAGAGACTGTTGGCGGTC
GCCTGCCTGGTTGACACTCACTTTTGAGCTGCTCGGATGTACAGTACAAG
TACAAGCACACCTGTGTTTGCACTACCTAGTTTGGCAAGGGGATGACCGC
CAGCCCCCCCATCGGCGTGCCCGCTGGTCCCCGCTGCCACACCCCTTCAC
ACCTGCGCTAAATCTGCATGAGACACCCGCCCACTTGCCCGCCTGTCCGG
CTCACCCTTGCTGCCCCCCCCCCCCCCCCCCTCCCCCACACGTCCCTCCC
TCCCCTCCTCCCGCCTGTGCTTCCTTTCACTTGTGTCTGCGCGTGTGTGC
TGCCATGCCCCCCACCAGTTCTTCTACCGGCTGGCAGCGAGGCAGGCACG
GGCGGATCGCGCGCGCGCTCTGGGGTCTGACCTGCTTAGCCAGATGGCAG
CTCAAGTCTGGGCCTTGGGGGGGGGGACGGCAGCGGCGGCGCCCGCGGGT
GCCTGGGTGCCTGTGGGGGGGGAAGGCGGTGGCAGCGCTGCCGGCAGCAA
AAACCTGTGCGGCCTTGGGCCGCGCATGTCATGGGTGGCCTGTGAGGAGC
TCCTCGCCTTCTTCGCTCGAGGCACAGATGGCGAGGAGGTGGCAGCACGT
GAGCCCTTGCCGTCCGCCCTGGCGGGCGGCGCACTGGGTGACGGGGGTGA
CGACGTGCTTCCGTCAACGATGATGACCGCGGTGTGGATGGGGCGTGCGG
CGCATGCGGCGCGTGCCCACGAGGCGGCGGCGGCAGCGGCGGCCATGGCT
GCCACGGCTGGGGAGGTGGGGGTTCAGGACCATGGCCTGGACCAGCAAGA
GCTGCAGCAGGATCCGGCACTCTTGCAAGACGCGGCTCGCAGGCTAGGGC
TGAATTTGCTCCTTCCCGGGCGGTCGCACTTAGGGGTCTGCAAGAGCGAC
GCCGCCTGCGTGCTTTGCGGCCTGCCCCTCCCCTTAGCCGGCCCGGCTGG
GGCCGCAGCGACGGCGGCGGAGGTGGTGCCCCCGTGCGGCCACCCTTACC
ACGCCCTCTGCGGACAGCAGGCAGTGCTTCAGCCCCCGCCGTGCCGCCAG
TGCTTGCGGGAACGGCAGCGGCGGGGGCAGCGGCGGCTGCACCAGCAGCA
CCTAAGGCGGCGGGACTCCCCAGAGGAGTTGGGTCATGGCTGGACCGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7824069..7825917+

>mRNA_S-ischiensis_contig1.1155.1 ID=mRNA_S-ischiensis_contig1.1155.1|Name=mRNA_S-ischiensis_contig1.1155.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2814bp|location=Sequence derived from alignment at S-ischiensis_contig1:7824069..7825917+ (Schizocladia ischiensis KU_0333)
GCTGGGTCTCCCGATACCGGGCACGGCGATGAGCATGGAGGCGCAGAGGC
ATCGTCATCTGCTGCCTCCGCCACCGCCACCACCGCCGCTGCTGCCACTC
TGGAGGGGTTTGCTCGACAGCATCATCAGCAGCAGCAGGCTGAGGAGGGC
TATGGTGGGGCAGCCGTAGGTCGACGCGGCGGTGGGCCTTCTCTGTCTCC
GCGGCCGCGGTCGTGCCTGGGGTCTTCCTCGCGGCGCGGGAGTGTGGAGG
TGCCAAGGACCGTGGCCACCGTTCGGGCGCTCTCCGAGCGTTGCCACGGC
GGCGGCGACGGCGGTGGCGGCAGTGCACGGCGTGACCGCTCATTGAGGGG
TGGGAGTGAAGCGCAGTCGGTGCCGCTGTCATCCCGGCTGTCGTTGTCCC
CTCTGTCGCCGCCAAGGCGGCGGTCTTTGCCGAGCTCCGGGTGGCTGGGG
GTCGGAGGAGGGCCCGGGATGTCGGCTCTGGAGCTGGCGGAGGCGGTGGT
GGACGGGCTGGGCCCTGAGGGGGCAACGCGGGTGCTGTGGGGGGCGCCGG
CGCTCCTGGAGGACATGCCGCCGGAGGCTGGGTCTCCCGATACCGGGCAC
GGCGATGAGCATGGAGGCGCAGAGGCATCGTCATCTGCTGCCTCCGCCAC
CGCCACCACCGCCGCTGCTGCCACTCTGGAGGGGTTTGCTCGACAGCATC
ATCAGCAGCAGCAGGCTGAGGAGGGCTATGGTGGGGCAGCCGTAGGTCGA
CGCGGCGGTGGGCCTTCTCTGTCTCCGCGGCCGCGGTCGTGCCTGGGGTC
TTCCTCGCGGCGCGGGAGTGTGGAGGTGCCAAGGACCGTGGCCACCGTTC
GGGCGCTCTCCGAGCGTTGCCACGGCGGCGGCGACGGCGGTGGCGGCAGT
GCACGGCGTGACCGCTCATTGAGGGGTGGGAGTGAAGCGCAGTCGGTGCC
GCTGTCATCCCGGCTGTCGTTGTCCCCTCTGTCGCCGCCAAGGCGGCGGT
CTTTGCCGAGCTCCGGGTGGCTGGGGGTCGGAGGAGGGCCCGGGATGTCG
GCTCTGGAGCTGGCGGAGGCGGTGGTGGACGGGCTGGGCCCTGAGGGGGC
AACGCGGGTGCTGTGGGGGGCGCCGGCGCTCCTGGAGGACATGCCGCCGG
AGTTCTTCTACCGGCTGGCAGCGAGGCAGGCACGGGCGGATCGCGCGCGC
GCTCTGGGGTCTGACCTGCTTAGCCAGATGGCAGCTCAAGTCTGGGCCTT
GGGGGGGGGGACGGCAGCGGCGGCGCCCGCGGGTGCCTGGGTGCCTGTGG
GGGGGGAAGGCGGTGGCAGCGCTGCCGGCAGCAAAAACCTGTGCGGCCTT
GGGCCGCGCATGTCATGGGTGGCCTGTGAGGAGCTCCTCGCCTTCTTCGC
TCGAGGCACAGATGGCGAGGAGGTGGCAGCACGTGAGCCCTTGCCGTCCG
CCCTGGCGGGCGGCGCACTGGGTGACGGGGGTGACGACGTGCTTCCGTCA
ACGATGATGACCGCGGTGTGGATGGGGCGTGCGGCGCATGCGGCGCGTGC
CCACGAGGCGGCGGCGGCAGCGGCGGCCATGGCTGCCACGGCTGGGGAGG
TGGGGGTTCAGGACCATGGCCTGGACCAGCAAGAGCTGCAGCAGGATCCG
GCACTCTTGCAAGACGCGGCTCGCAGGCTAGGGCTGAATTTGCTCCTTCC
CGGGCGGTCGCACTTAGGGGTCTGCAAGAGCGACGCCGCCTGCGTGCTTT
GCGGCCTGCCCCTCCCCTTAGCCGGCCCGGCTGGGGCCGCAGCGACGGCG
GCGGAGGTGGTGCCCCCGTGCGGCCACCCTTACCACGCCCTCTGCGGACA
GCAGGCAGTGCTTCAGCCCCCGCCGTGCCGCCAGTGCTTGCGGGAACGGC
AGCGGCGGGGGCAGCGGCGGCTGCACCAGCAGCACCTAAGGCGGCGGGAC
TCCCCAGAGGAGTTGGGTCATGGCTGGACCGAATTCTTCTACCGGCTGGC
AGCGAGGCAGGCACGGGCGGATCGCGCGCGCGCTCTGGGGTCTGACCTGC
TTAGCCAGATGGCAGCTCAAGTCTGGGCCTTGGGGGGGGGGACGGCAGCG
GCGGCGCCCGCGGGTGCCTGGGTGCCTGTGGGGGGGGAAGGCGGTGGCAG
CGCTGCCGGCAGCAAAAACCTGTGCGGCCTTGGGCCGCGCATGTCATGGG
TGGCCTGTGAGGAGCTCCTCGCCTTCTTCGCTCGAGGCACAGATGGCGAG
GAGGTGGCAGCACGTGAGCCCTTGCCGTCCGCCCTGGCGGGCGGCGCACT
GGGTGACGGGGGTGACGACGTGCTTCCGTCAACGATGATGACCGCGGTGT
GGATGGGGCGTGCGGCGCATGCGGCGCGTGCCCACGAGGCGGCGGCGGCA
GCGGCGGCCATGGCTGCCACGGCTGGGGAGGTGGGGGTTCAGGACCATGG
CCTGGACCAGCAAGAGCTGCAGCAGGATCCGGCACTCTTGCAAGACGCGG
CTCGCAGGCTAGGGCTGAATTTGCTCCTTCCCGGGCGGTCGCACTTAGGG
GTCTGCAAGAGCGACGCCGCCTGCGTGCTTTGCGGCCTGCCCCTCCCCTT
AGCCGGCCCGGCTGGGGCCGCAGCGACGGCGGCGGAGGTGGTGCCCCCGT
GCGGCCACCCTTACCACGCCCTCTGCGGACAGCAGGCAGTGCTTCAGCCC
CCGCCGTGCCGCCAGTGCTTGCGGGAACGGCAGCGGCGGGGGCAGCGGCG
GCTGCACCAGCAGCACCTAAGGCGGCGGGACTCCCCAGAGGAGTTGGGTC
ATGGCTGGACCGAA
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