mRNA_S-ischiensis_contig1.1153.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1153.1
Unique NamemRNA_S-ischiensis_contig1.1153.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1153.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.250e-17
Identity = 81/218 (37.16%), Postives = 98/218 (44.95%), Query Frame = 1 
Query:   22 GPLAQEAVASALSL-----------------PRFTAEEVGTEAGFVAGKSAGAAGLGGLGAWRARRPPGT-LCLLLKNLPALFRWDAAVAAELCAQAFPEVRPWNVYEALYGGSE--WCGPEPAFLPPDVAALAFGPEPTASVGGSATGSGPGQGLEASDDGSVGSIGAGSGADELAEMLSDCAFQAYLWELLRAGSAAGTACRRDRLVVYRCLQLSL 615
            GP+ ++AV  AL L                  R   EE G   GF   ++ G+  L  LG   ++ P G  LCLLL NL  LFRWD A AAE+CA AFP VRPWNV+ AL+   +  W   EP                T   GGSA          A   G+  + G G G        +D AF AYLW +LR        CR D  V+ RCLQLSL
Sbjct:  458 GPMEEDAVRKALGLLVPPADPAGNVVEDENHRRHANEEHGQGVGFSGHEAGGSGRL--LGQTTSQAPGGAPLCLLLNNLGELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPV---------------TPVEGGSAR-----YQTHAPPAGAGVARGDGDGGTR-----TDAAFHAYLWAVLRKHPGE---CRGDWKVIQRCLQLSL 645
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BLAST of mRNA_S-ischiensis_contig1.1153.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 6.920e-16
Identity = 80/219 (36.53%), Postives = 95/219 (43.38%), Query Frame = 1 
Query:   22 GPLAQEAVASALSL-----------------PRFTAEEVGTEAGFVAGKSAGAAGLGGLGAWRARRPPG--TLCLLLKNLPALFRWDAAVAAELCAQAFPEVRPWNVYEALYGGSE--WCGPEPAFLPPDVAALAFGPEPTASVGGSATGSGPGQGLEASDDGSVGSIGAGSGADELAEMLSDCAFQAYLWELLRAGSAAGTACRRDRLVVYRCLQLSL 615
            GP+ ++AV  AL L                  R    E G   GF +G  AG  G G L +   ++ PG   LCLLL NL  LFRWD A AAE+CA AFP VRPWNV+ AL+   +  W   EP        A      P A  G             A  DG  G+              +D AF AYLW +LR        CR D  V+ RCLQLSL
Sbjct:  989 GPMEEDAVRKALGLLVPPADPAGNVVEDENHRRHANAEHGQGVGF-SGHEAG--GSGRLLSQTTKQAPGGAPLCLLLNNLRELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPVTPVGGGTARYQAQAPPAGAG------------VAGGDGDGGTR-------------TDAAFHAYLWAVLRKHPGE---CRGDWKVIQRCLQLSL 1176
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMZ7_9PHAE4.250e-1737.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF16_ECTSI6.920e-1636.53PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7821803..7822687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size616
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.5108013-CDS-S-ischiensis_contig1:7821802..78220801622815486.5108013-CDS-S-ischiensis_contig1:7821802..7822080Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7821803..7822080 +
1695739729.2950482-CDS-S-ischiensis_contig1:7821802..78220801695739729.2950482-CDS-S-ischiensis_contig1:7821802..7822080Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7821803..7822080 +
1622815486.569463-CDS-S-ischiensis_contig1:7822350..78226871622815486.569463-CDS-S-ischiensis_contig1:7822350..7822687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7822351..7822687 +
1695739729.3039298-CDS-S-ischiensis_contig1:7822350..78226871695739729.3039298-CDS-S-ischiensis_contig1:7822350..7822687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7822351..7822687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1153.1prot_S-ischiensis_contig1.1153.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7821803..7822687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1153.1

>prot_S-ischiensis_contig1.1153.1 ID=prot_S-ischiensis_contig1.1153.1|Name=mRNA_S-ischiensis_contig1.1153.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=205bp
KIPARPPGPLAQEAVASALSLPRFTAEEVGTEAGFVAGKSAGAAGLGGLG
AWRARRPPGTLCLLLKNLPALFRWDAAVAAELCAQAFPEVRPWNVYEALY
GGSEWCGPEPAFLPPDVAALAFGPEPTASVGGSATGSGPGQGLEASDDGS
VGSIGAGSGADELAEMLSDCAFQAYLWELLRAGSAAGTACRRDRLVVYRC
LQLSL
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mRNA from alignment at S-ischiensis_contig1:7821803..7822687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1153.1 ID=mRNA_S-ischiensis_contig1.1153.1|Name=mRNA_S-ischiensis_contig1.1153.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=885bp|location=Sequence derived from alignment at S-ischiensis_contig1:7821803..7822687+ (Schizocladia ischiensis KU_0333)
AAGATTCCCGCCCGGCCGCCCGGCCCGCTGGCTCAAGAGGCCGTAGCCTC
TGCGCTGTCCCTGCCGCGCTTCACTGCCGAGGAGGTAGGGACAGAGGCGG
GGTTTGTGGCTGGCAAGAGCGCTGGAGCCGCGGGGCTTGGTGGATTGGGG
GCGTGGCGGGCCCGGCGCCCGCCGGGCACGCTATGCCTGCTGTTGAAGAA
CCTCCCAGCGCTGTTCCGGTGGGATGCGGCAGTGGCAGCGGAGCTGTGCG
CGCAAGCTTTCCCCGAGGTCCGCCCCTGGTGAGGCCCGCCGTTTTACCAG
CGCGACGGGGAAGCGGAGGTGTCGAGGGAGGAACGAAACGCGTGTACAGT
AGAGTACAGTACGCGCGCTGCGGTGTTTCCAAGTTGTGCTGCGTGCTGGT
ATGGTGCGGGGTTACGCCCCCCTTGACATGGACGTGACCCTCAAATCTTG
TGTGGACTACTACTGTGGTGCACGCCGCACATGTGCAGTGCTTATTAGTT
ATTTTTCTAGATGCCACTGACGGGCGCCAACGCTTCCGCCCCAAACAGGA
ATGTGTACGAGGCCCTGTACGGTGGCTCCGAGTGGTGCGGCCCCGAACCC
GCCTTCCTGCCCCCGGATGTAGCGGCCCTAGCCTTTGGGCCCGAACCCAC
TGCCAGCGTGGGCGGCTCCGCCACGGGGTCTGGCCCAGGACAAGGTCTGG
AGGCCAGCGACGACGGGAGCGTAGGCAGCATCGGCGCCGGCAGCGGGGCC
GATGAATTGGCGGAGATGCTCAGCGACTGCGCCTTCCAGGCCTACCTCTG
GGAGCTGCTCCGGGCGGGGAGCGCTGCGGGCACCGCCTGCCGGCGCGACC
GTCTGGTGGTGTACCGGTGCCTCCAGTTGTCCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7821803..7822687+

>mRNA_S-ischiensis_contig1.1153.1 ID=mRNA_S-ischiensis_contig1.1153.1|Name=mRNA_S-ischiensis_contig1.1153.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1230bp|location=Sequence derived from alignment at S-ischiensis_contig1:7821803..7822687+ (Schizocladia ischiensis KU_0333)
AAGATTCCCGCCCGGCCGCCCGGCCCGCTGGCTCAAGAGGCCGTAGCCTC
TGCGCTGTCCCTGCCGCGCTTCACTGCCGAGGAGGTAGGGACAGAGGCGG
GGTTTGTGGCTGGCAAGAGCGCTGGAGCCGCGGGGCTTGGTGGATTGGGG
GCGTGGCGGGCCCGGCGCCCGCCGGGCACGCTATGCCTGCTGTTGAAGAA
CCTCCCAGCGCTGTTCCGGTGGGATGCGGCAGTGGCAGCGGAGCTGTGCG
CGCAAGCTTTCCCCGAGGTCCGCCCCTGAAGATTCCCGCCCGGCCGCCCG
GCCCGCTGGCTCAAGAGGCCGTAGCCTCTGCGCTGTCCCTGCCGCGCTTC
ACTGCCGAGGAGGTAGGGACAGAGGCGGGGTTTGTGGCTGGCAAGAGCGC
TGGAGCCGCGGGGCTTGGTGGATTGGGGGCGTGGCGGGCCCGGCGCCCGC
CGGGCACGCTATGCCTGCTGTTGAAGAACCTCCCAGCGCTGTTCCGGTGG
GATGCGGCAGTGGCAGCGGAGCTGTGCGCGCAAGCTTTCCCCGAGGTCCG
CCCCTGGAATGTGTACGAGGCCCTGTACGGTGGCTCCGAGTGGTGCGGCC
CCGAACCCGCCTTCCTGCCCCCGGATGTAGCGGCCCTAGCCTTTGGGCCC
GAACCCACTGCCAGCGTGGGCGGCTCCGCCACGGGGTCTGGCCCAGGACA
AGGTCTGGAGGCCAGCGACGACGGGAGCGTAGGCAGCATCGGCGCCGGCA
GCGGGGCCGATGAATTGGCGGAGATGCTCAGCGACTGCGCCTTCCAGGCC
TACCTCTGGGAGCTGCTCCGGGCGGGGAGCGCTGCGGGCACCGCCTGCCG
GCGCGACCGTCTGGTGGTGTACCGGTGCCTCCAGTTGTCCCTGGAATGTG
TACGAGGCCCTGTACGGTGGCTCCGAGTGGTGCGGCCCCGAACCCGCCTT
CCTGCCCCCGGATGTAGCGGCCCTAGCCTTTGGGCCCGAACCCACTGCCA
GCGTGGGCGGCTCCGCCACGGGGTCTGGCCCAGGACAAGGTCTGGAGGCC
AGCGACGACGGGAGCGTAGGCAGCATCGGCGCCGGCAGCGGGGCCGATGA
ATTGGCGGAGATGCTCAGCGACTGCGCCTTCCAGGCCTACCTCTGGGAGC
TGCTCCGGGCGGGGAGCGCTGCGGGCACCGCCTGCCGGCGCGACCGTCTG
GTGGTGTACCGGTGCCTCCAGTTGTCCCTG
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