mRNA_S-ischiensis_contig1.1152.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1152.1
Unique NamemRNA_S-ischiensis_contig1.1152.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1152.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.110e-10
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    4 GPEQWEDERAAGFVREYGAYVEVDAVAAAASARELGLALGQALELAGLDRDFCRRDRELRKLL 192
            GP QW++E+A GF+++YGAY+E DAVAAAAS RE+  AL + L LA    D+  ++R L +LL
Sbjct:  296 GPLQWDEEKAVGFIQDYGAYLEADAVAAAASCREMEWALDEVLRLAEQCEDYKSKERVLHQLL 358
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BLAST of mRNA_S-ischiensis_contig1.1152.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.340e-9
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    4 GPEQWEDERAAGFVREYGAYVEVDAVAAAASARELGLALGQALELAGLDRDFCRRDRELRKLL 192
            GP QW++E+A GF+++YGAY+E DAVAAAAS RE+  AL + L LA    D+  ++R L +LL
Sbjct:  827 GPLQWDEEKAVGFIQDYGAYLEGDAVAAAASCREMEWALDEVLRLAEQCEDYKSKERVLHQLL 889
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMZ7_9PHAE9.110e-1052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF16_ECTSI2.340e-952.38PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7821128..7821720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.4548287-CDS-S-ischiensis_contig1:7821127..78213001622815486.4548287-CDS-S-ischiensis_contig1:7821127..7821300Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7821128..7821300 +
1695739729.275957-CDS-S-ischiensis_contig1:7821127..78213001695739729.275957-CDS-S-ischiensis_contig1:7821127..7821300Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7821128..7821300 +
1622815486.4689233-CDS-S-ischiensis_contig1:7821649..78217191622815486.4689233-CDS-S-ischiensis_contig1:7821649..7821719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7821650..7821719 +
1695739729.2866213-CDS-S-ischiensis_contig1:7821649..78217191695739729.2866213-CDS-S-ischiensis_contig1:7821649..7821719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7821650..7821719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1152.1prot_S-ischiensis_contig1.1152.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7821128..7821719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1152.1

>prot_S-ischiensis_contig1.1152.1 ID=prot_S-ischiensis_contig1.1152.1|Name=mRNA_S-ischiensis_contig1.1152.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=81bp
GGPEQWEDERAAGFVREYGAYVEVDAVAAAASARELGLALGQALELAGLD
RDFCRRDRELRKLLGIGWGLGVAATSPPWRS
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mRNA from alignment at S-ischiensis_contig1:7821128..7821720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1152.1 ID=mRNA_S-ischiensis_contig1.1152.1|Name=mRNA_S-ischiensis_contig1.1152.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=593bp|location=Sequence derived from alignment at S-ischiensis_contig1:7821128..7821720+ (Schizocladia ischiensis KU_0333)
GGTGGGCCGGAGCAGTGGGAGGACGAGCGGGCAGCGGGCTTCGTCCGGGA
GTACGGCGCGTATGTGGAGGTGGATGCGGTGGCGGCGGCGGCGTCCGCGC
GGGAGCTGGGGCTGGCGCTTGGGCAGGCGTTGGAGCTGGCCGGCCTGGAC
CGGGACTTCTGCCGAAGGGACAGGTGCGTCCGATATGCTACTTCCGGAAG
TAGAGTACAAATTTGCGAGCTGTCACTGTGGTGCAAGGCCCGCTTGAGCG
AGCCCGCCAGGGAGCAACTTCGACTCTGCATGGGCACACAATCTCCCTGG
CTCCTGTAGCCGGCTCATTCGCTGGCTGCACTCGCGACTGAGATGATGCA
TCTCGCGCGACCTGCACTGCCCCACGGCGTACATGCATTCACTACTTAGT
CTCATCTGCCCCATTCCGATCCAGTTTGCTGCCTGGAAACTCATGCCCAA
GCGCTGCGGCCCTGACCCCAACACACACTGTTCTCGACCCCCCCACGCCC
CTGCCGCCGCGATGCCGTGCAGGGAGCTGCGCAAGCTTCTGGGGATCGGG
TGGGGGCTGGGCGTGGCAGCAACTAGCCCGCCTTGGAGAAGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7821128..7821720+

>mRNA_S-ischiensis_contig1.1152.1 ID=mRNA_S-ischiensis_contig1.1152.1|Name=mRNA_S-ischiensis_contig1.1152.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=486bp|location=Sequence derived from alignment at S-ischiensis_contig1:7821128..7821720+ (Schizocladia ischiensis KU_0333)
GGTGGGCCGGAGCAGTGGGAGGACGAGCGGGCAGCGGGCTTCGTCCGGGA
GTACGGCGCGTATGTGGAGGTGGATGCGGTGGCGGCGGCGGCGTCCGCGC
GGGAGCTGGGGCTGGCGCTTGGGCAGGCGTTGGAGCTGGCCGGCCTGGAC
CGGGACTTCTGCCGAAGGGACAGGGTGGGCCGGAGCAGTGGGAGGACGAG
CGGGCAGCGGGCTTCGTCCGGGAGTACGGCGCGTATGTGGAGGTGGATGC
GGTGGCGGCGGCGGCGTCCGCGCGGGAGCTGGGGCTGGCGCTTGGGCAGG
CGTTGGAGCTGGCCGGCCTGGACCGGGACTTCTGCCGAAGGGACAGGGAG
CTGCGCAAGCTTCTGGGGATCGGGTGGGGGCTGGGCGTGGCAGCAACTAG
CCCGCCTTGGAGAAGCGGAGCTGCGCAAGCTTCTGGGGATCGGGTGGGGG
CTGGGCGTGGCAGCAACTAGCCCGCCTTGGAGAAGC
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