mRNA_S-ischiensis_contig1.1148.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1148.1
Unique NamemRNA_S-ischiensis_contig1.1148.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7809037..7810126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size371
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.6465895-CDS-S-ischiensis_contig1:7809036..78090911622815360.6465895-CDS-S-ischiensis_contig1:7809036..7809091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7809037..7809091 +
1695739659.624171-CDS-S-ischiensis_contig1:7809036..78090911695739659.624171-CDS-S-ischiensis_contig1:7809036..7809091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7809037..7809091 +
1622815360.6633694-CDS-S-ischiensis_contig1:7809810..78101241622815360.6633694-CDS-S-ischiensis_contig1:7809810..7810124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7809811..7810124 +
1695739659.6345098-CDS-S-ischiensis_contig1:7809810..78101241695739659.6345098-CDS-S-ischiensis_contig1:7809810..7810124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7809811..7810124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1148.1prot_S-ischiensis_contig1.1148.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7809037..7810124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1148.1

>prot_S-ischiensis_contig1.1148.1 ID=prot_S-ischiensis_contig1.1148.1|Name=mRNA_S-ischiensis_contig1.1148.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
HGSGAGTDEPGSHCGGRPGAAQRPRPGPGLRLLPRPEGVRPAGPAPGRRA
NRRSCCSRSEEGVGTAGSRAQGGDRGSHGRGRGRWCRWELGPGGVPGLGG
RGADAPGEQPVEACPQPAGGGAQ
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mRNA from alignment at S-ischiensis_contig1:7809037..7810126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1148.1 ID=mRNA_S-ischiensis_contig1.1148.1|Name=mRNA_S-ischiensis_contig1.1148.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1090bp|location=Sequence derived from alignment at S-ischiensis_contig1:7809037..7810126+ (Schizocladia ischiensis KU_0333)
CATGGGTCAGGAGCTGGCACGGATGAGCCTGGCAGCCATTGCGGAGGACG
TCCAGGTTGGTGTAGGTATATGGAGAGAGGGAGGGCTCGAGCTGTCGGGG
CCCTCAAGGAAAGGGGCAGGGAATGGAGGGAGGGAGGGGGGGAGGGAGGG
AGGGAGGGAGGGATGAAGTTCAAGGTTGATGGAGGCGCAGAGGAAGAATG
AGAGGGTGGAGGGGGGGTCTATGGTGAGGGGGGGCGGGGGTGGGGGACCA
CGCCGTGTCGTTCTGCTTTCTTTCCTCCCATGTGTGGCAACCTGCCTGTA
CTATATATATCCCCGGTATATATGTACTCGGGTACTGACGTTGTGCTTGC
TGTACATCGTTTCGAGATCACGGACCACGCACTGTTGACTACGGAGCAAT
CTCCCTCCCTGTACCACTATACAAAGTACAGCAGGCGTTCGCCGAGTGCG
CAAAAGCACGGTCCATTCGCTGATCTCCGCACACACTGCTGTATGTGATA
AGCTTGCCCTAGTCCCGAGACCATGGGCCGCGTTCCTCGACCGCAACACT
GTGTGCAGCACATGCCAGGCTTGCCTGCGTCCGGACACGCCGCCCTTAAC
ACGCTTGCCTGCCTCTCTTCCTGCCGCCTCTGTCCCCCTCGCCCCCCCCT
TCCTCTGTCCCACCCCCCCGTCCCGCTCCTCCTCCTCCGCCTCCTCCTCC
TCCCCCTTCTCCTCCTCCCCCTCCTCCTCCTCCATCCTCCTCGCCTCCCC
CCCCCCAATCCCCGCCCGCTCCAGGAGCTGCACAACGTCCGCGACCGGGC
CCAGGCCTCCGGCTTCTACCACGGCCGGAAGGTGTCCGCCCTGCTGGCCC
CGCCCCTGGAAGGCGGGCAAACCGCCGCAGCTGCTGCTCCCGGAGCGAGG
AAGGTGTTGGCACCGCGGGTTCAAGGGCACAAGGCGGGGACCGAGGCAGC
CACGGCCGCGGCCGCGGGCGCTGGTGCCGGTGGGAGCTCGGGCCTGGTGG
AGTACCAGGGCTTGGTGGACGGGGAGCTGACGCGCCTGGGGAACAACCTG
TTGAGGCGTGCCCACAGCCTGCGGGGGGAGGGGCGCAGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7809037..7810126+

>mRNA_S-ischiensis_contig1.1148.1 ID=mRNA_S-ischiensis_contig1.1148.1|Name=mRNA_S-ischiensis_contig1.1148.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig1:7809037..7810126+ (Schizocladia ischiensis KU_0333)
CATGGGTCAGGAGCTGGCACGGATGAGCCTGGCAGCCATTGCGGAGGACG
TCCAGCATGGGTCAGGAGCTGGCACGGATGAGCCTGGCAGCCATTGCGGA
GGACGTCCAGGAGCTGCACAACGTCCGCGACCGGGCCCAGGCCTCCGGCT
TCTACCACGGCCGGAAGGTGTCCGCCCTGCTGGCCCCGCCCCTGGAAGGC
GGGCAAACCGCCGCAGCTGCTGCTCCCGGAGCGAGGAAGGTGTTGGCACC
GCGGGTTCAAGGGCACAAGGCGGGGACCGAGGCAGCCACGGCCGCGGCCG
CGGGCGCTGGTGCCGGTGGGAGCTCGGGCCTGGTGGAGTACCAGGGCTTG
GTGGACGGGGAGCTGACGCGCCTGGGGAACAACCTGTTGAGGCGTGCCCA
CAGCCTGCGGGGGGAGGGGCGCAGGAGCTGCACAACGTCCGCGACCGGGC
CCAGGCCTCCGGCTTCTACCACGGCCGGAAGGTGTCCGCCCTGCTGGCCC
CGCCCCTGGAAGGCGGGCAAACCGCCGCAGCTGCTGCTCCCGGAGCGAGG
AAGGTGTTGGCACCGCGGGTTCAAGGGCACAAGGCGGGGACCGAGGCAGC
CACGGCCGCGGCCGCGGGCGCTGGTGCCGGTGGGAGCTCGGGCCTGGTGG
AGTACCAGGGCTTGGTGGACGGGGAGCTGACGCGCCTGGGGAACAACCTG
TTGAGGCGTGCCCACAGCCTGCGGGGGGAGGGGCGCAG
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