mRNA_S-ischiensis_contig1.1145.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1145.1
Unique NamemRNA_S-ischiensis_contig1.1145.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7804310..7805428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1121
Cds size1119
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.9152193-CDS-S-ischiensis_contig1:7804309..78054281622815376.9152193-CDS-S-ischiensis_contig1:7804309..7805428Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7804310..7805428 +
1695739665.862838-CDS-S-ischiensis_contig1:7804309..78054281695739665.862838-CDS-S-ischiensis_contig1:7804309..7805428Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7804310..7805428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1145.1prot_S-ischiensis_contig1.1145.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7804310..7805428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1145.1

>prot_S-ischiensis_contig1.1145.1 ID=prot_S-ischiensis_contig1.1145.1|Name=mRNA_S-ischiensis_contig1.1145.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=373bp
GVGAEDAGAPPPPHGLQSSPSWSGSDGVNGSSSLIRTTDELLRQTSGLLE
RPSPGRGSGATDPSTESHRPTSPAPFLSPLTSPPLRHWSRPAGSDGGADP
HTPDGPDRDGRSGVSCASDADSGMHVPGDEEAGPGLFNPEGGAGADTREP
VYLAEEVLAAAAAAAAGAAAAAAPPPRGLGEAHSAASEPTGRRIPHTHGL
APPQTPVVPSPPPPPPPPHTPPPPPPPPPPHTPPSLSSTPSPRPPRAAAR
RGMAPASPPGTGDAAAATAILVTASQPGAGLPGRHSVGARAKVGAGLQRD
GERRGRHSPEDRPEARAATTGQGGKSPMQTIVRTLLQRSLRSMNAALQPG
KGAASDDDDDDDDDDDDCGSHQG
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mRNA from alignment at S-ischiensis_contig1:7804310..7805428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1145.1 ID=mRNA_S-ischiensis_contig1.1145.1|Name=mRNA_S-ischiensis_contig1.1145.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1119bp|location=Sequence derived from alignment at S-ischiensis_contig1:7804310..7805428+ (Schizocladia ischiensis KU_0333)
GGGGTGGGTGCTGAGGACGCCGGCGCCCCCCCTCCTCCCCACGGGCTGCA
AAGCTCTCCCTCCTGGTCGGGCAGCGACGGCGTCAACGGGTCGTCGTCGC
TGATCCGGACTACGGATGAGCTGCTGCGGCAGACGTCGGGCCTGTTGGAG
CGTCCCAGCCCCGGCCGGGGCAGTGGCGCCACTGACCCTTCCACGGAGTC
TCACCGCCCCACGTCGCCGGCGCCGTTCCTGAGCCCGCTGACATCCCCGC
CGTTGCGGCACTGGTCGCGTCCTGCCGGCAGCGACGGTGGCGCTGACCCA
CACACGCCCGATGGGCCTGACCGTGATGGCAGGTCTGGGGTCAGCTGTGC
CAGCGATGCGGATTCTGGCATGCACGTGCCCGGGGACGAGGAGGCTGGGC
CTGGCCTCTTCAACCCAGAGGGCGGGGCAGGTGCCGACACGAGGGAGCCT
GTTTACTTGGCGGAAGAGGTGCTGGCTGCAGCCGCAGCAGCTGCAGCCGG
AGCTGCCGCAGCAGCAGCACCTCCGCCCCGTGGGCTGGGGGAGGCCCACT
CGGCGGCGAGCGAACCCACTGGCAGACGCATACCGCACACGCATGGGCTG
GCTCCGCCGCAAACGCCGGTGGTACCGTCGCCGCCGCCGCCACCGCCACC
ACCTCACACGCCGCCGCCACCGCCGCCGCCGCCACCACCTCACACTCCGC
CGTCATTGTCGTCGACCCCGTCTCCACGGCCGCCTCGTGCGGCAGCTCGC
CGCGGGATGGCACCGGCTTCGCCACCAGGCACTGGCGATGCGGCGGCAGC
CACGGCAATACTCGTGACTGCATCCCAGCCTGGCGCGGGATTGCCCGGGA
GACATAGTGTTGGCGCCCGGGCAAAGGTGGGGGCTGGGCTCCAGCGGGAT
GGGGAGAGGCGTGGGAGGCACAGCCCTGAGGACCGGCCAGAGGCGAGGGC
GGCAACGACGGGGCAGGGTGGCAAGAGCCCAATGCAGACGATTGTGAGGA
CGCTGCTACAGCGGTCACTGCGGTCTATGAATGCCGCGCTGCAGCCGGGA
AAGGGTGCCGCCAGTGACGACGATGACGATGATGACGACGACGACGATGA
TTGCGGGAGTCACCAGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7804310..7805428+

>mRNA_S-ischiensis_contig1.1145.1 ID=mRNA_S-ischiensis_contig1.1145.1|Name=mRNA_S-ischiensis_contig1.1145.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2238bp|location=Sequence derived from alignment at S-ischiensis_contig1:7804310..7805428+ (Schizocladia ischiensis KU_0333)
GGGGTGGGTGCTGAGGACGCCGGCGCCCCCCCTCCTCCCCACGGGCTGCA
AAGCTCTCCCTCCTGGTCGGGCAGCGACGGCGTCAACGGGTCGTCGTCGC
TGATCCGGACTACGGATGAGCTGCTGCGGCAGACGTCGGGCCTGTTGGAG
CGTCCCAGCCCCGGCCGGGGCAGTGGCGCCACTGACCCTTCCACGGAGTC
TCACCGCCCCACGTCGCCGGCGCCGTTCCTGAGCCCGCTGACATCCCCGC
CGTTGCGGCACTGGTCGCGTCCTGCCGGCAGCGACGGTGGCGCTGACCCA
CACACGCCCGATGGGCCTGACCGTGATGGCAGGTCTGGGGTCAGCTGTGC
CAGCGATGCGGATTCTGGCATGCACGTGCCCGGGGACGAGGAGGCTGGGC
CTGGCCTCTTCAACCCAGAGGGCGGGGCAGGTGCCGACACGAGGGAGCCT
GTTTACTTGGCGGAAGAGGTGCTGGCTGCAGCCGCAGCAGCTGCAGCCGG
AGCTGCCGCAGCAGCAGCACCTCCGCCCCGTGGGCTGGGGGAGGCCCACT
CGGCGGCGAGCGAACCCACTGGCAGACGCATACCGCACACGCATGGGCTG
GCTCCGCCGCAAACGCCGGTGGTACCGTCGCCGCCGCCGCCACCGCCACC
ACCTCACACGCCGCCGCCACCGCCGCCGCCGCCACCACCTCACACTCCGC
CGTCATTGTCGTCGACCCCGTCTCCACGGCCGCCTCGTGCGGCAGCTCGC
CGCGGGATGGCACCGGCTTCGCCACCAGGCACTGGCGATGCGGCGGCAGC
CACGGCAATACTCGTGACTGCATCCCAGCCTGGCGCGGGATTGCCCGGGA
GACATAGTGTTGGCGCCCGGGCAAAGGTGGGGGCTGGGCTCCAGCGGGAT
GGGGAGAGGCGTGGGAGGCACAGCCCTGAGGACCGGCCAGAGGCGAGGGC
GGCAACGACGGGGCAGGGTGGCAAGAGCCCAATGCAGACGATTGTGAGGA
CGCTGCTACAGCGGTCACTGCGGTCTATGAATGCCGCGCTGCAGCCGGGA
AAGGGTGCCGCCAGTGACGACGATGACGATGATGACGACGACGACGATGA
TTGCGGGAGTCACCAGGGCGGGGTGGGTGCTGAGGACGCCGGCGCCCCCC
CTCCTCCCCACGGGCTGCAAAGCTCTCCCTCCTGGTCGGGCAGCGACGGC
GTCAACGGGTCGTCGTCGCTGATCCGGACTACGGATGAGCTGCTGCGGCA
GACGTCGGGCCTGTTGGAGCGTCCCAGCCCCGGCCGGGGCAGTGGCGCCA
CTGACCCTTCCACGGAGTCTCACCGCCCCACGTCGCCGGCGCCGTTCCTG
AGCCCGCTGACATCCCCGCCGTTGCGGCACTGGTCGCGTCCTGCCGGCAG
CGACGGTGGCGCTGACCCACACACGCCCGATGGGCCTGACCGTGATGGCA
GGTCTGGGGTCAGCTGTGCCAGCGATGCGGATTCTGGCATGCACGTGCCC
GGGGACGAGGAGGCTGGGCCTGGCCTCTTCAACCCAGAGGGCGGGGCAGG
TGCCGACACGAGGGAGCCTGTTTACTTGGCGGAAGAGGTGCTGGCTGCAG
CCGCAGCAGCTGCAGCCGGAGCTGCCGCAGCAGCAGCACCTCCGCCCCGT
GGGCTGGGGGAGGCCCACTCGGCGGCGAGCGAACCCACTGGCAGACGCAT
ACCGCACACGCATGGGCTGGCTCCGCCGCAAACGCCGGTGGTACCGTCGC
CGCCGCCGCCACCGCCACCACCTCACACGCCGCCGCCACCGCCGCCGCCG
CCACCACCTCACACTCCGCCGTCATTGTCGTCGACCCCGTCTCCACGGCC
GCCTCGTGCGGCAGCTCGCCGCGGGATGGCACCGGCTTCGCCACCAGGCA
CTGGCGATGCGGCGGCAGCCACGGCAATACTCGTGACTGCATCCCAGCCT
GGCGCGGGATTGCCCGGGAGACATAGTGTTGGCGCCCGGGCAAAGGTGGG
GGCTGGGCTCCAGCGGGATGGGGAGAGGCGTGGGAGGCACAGCCCTGAGG
ACCGGCCAGAGGCGAGGGCGGCAACGACGGGGCAGGGTGGCAAGAGCCCA
ATGCAGACGATTGTGAGGACGCTGCTACAGCGGTCACTGCGGTCTATGAA
TGCCGCGCTGCAGCCGGGAAAGGGTGCCGCCAGTGACGACGATGACGATG
ATGACGACGACGACGATGATTGCGGGAGTCACCAGGGC
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