mRNA_S-ischiensis_contig1.1144.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1144.1
Unique NamemRNA_S-ischiensis_contig1.1144.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1144.1 vs. uniprot
Match: D8LF17_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF17_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 3.160e-29
Identity = 104/279 (37.28%), Postives = 132/279 (47.31%), Query Frame = 1 
Query:   19 SPEAVVVAQEQCPIVQLDLGRTRTALPGVPP---ECDVLLAMTRRRALLLYFPCAPGSRMLPPFETAIDLDILPARLSTAGE---------------GRHPELGGCLWAKPAQPPNHLNQRRRDPSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDA-NLRPRPVSCALIAQPGGRLWRVGLYDGEVESTHRPTPTLGAILAGWRGGGDGGQQAALGTVDLGRLQVIDVGGSEAVLCWRLSGGGGDEGTGGVILLQPSTDTIVDCHVGLGEIKDIS 798
            SP+A+VV     P V LDLGRTR +LPG       CDVLL MTR++A+L YF       ++ P +T++DL+++    +  G+                   + GGCLW  PAQ P             XXXXXX                         A    PR V  A +AQPGGRLWRVGL DGEVESTHRP         G   GGDG        V+LG +  +DVG + A+LCWR SG    +G G   LL P+T + V    G+    D+S
Sbjct:  249 SPQAIVVGHTGSPGVSLDLGRTRASLPGATKGFLACDVLLVMTRKQAVLFYFAVGEDVSIVAPHKTSVDLNVVDHTTADTGQPSGGNXXXXXXXXXXXSRTDFGGCLWG-PAQMPGVGGXXXXXXXXXXXXXXXARGRSSAGMRTPERRESCEALPAAAAVAAAPRAVLFAYVAQPGGRLWRVGLSDGEVESTHRPL--------GVDEGGDG--LPVESGVELGEMWAVDVGDARALLCWR-SGFTSKKG-GEFALLDPNTHSFVAACPGMSGTVDVS 514
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BLAST of mRNA_S-ischiensis_contig1.1144.1 vs. uniprot
Match: A0A835ZFL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFL9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.480e-10
Identity = 62/183 (33.88%), Postives = 80/183 (43.72%), Query Frame = 1 
Query:   28 AVVVAQEQCPIVQLDLGRTRTALPGVPPEC-DVLLAMTRRRALLLYFPCAPG-SRMLPP------FETAIDLDILPARLSTAGEGRHPELGGCLWAKPAQPPNHLNQRRRDPSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDANLRPRPVSC-ALIAQPGGRLWRVGLYDGEVESTHRP 549
            A+VVA+E  P+VQLD G       GV     DVLL ++ RRALLLYF   P   +  PP         A+DLD+ P  +  AG+      GGCLW         L +   D +                                +  + P  V   A ++QPGGRLW + L DGEV+STHRP
Sbjct:  157 AMVVAKEGAPVVQLDWGE------GVATAVRDVLLVVSPRRALLLYFSTRPPPDQPAPPGAGDVVASAAVDLDLRPVDIDGAGKAPLTH-GGCLWGP-------LPEAGGDGA------------------------------GDETGVSPPVVPTKAFVSQPGGRLWCMSLADGEVQSTHRP 295
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF17_ECTSI3.160e-2937.28Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A835ZFL9_9STRA4.480e-1033.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7800795..7803948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-21_006370.1
Exons3
Model size1028
Cds size1026
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1144.1prot_S-ischiensis_contig1.1144.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7800795..7803946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.1778111-CDS-S-ischiensis_contig1:7800794..78009791622815486.1778111-CDS-S-ischiensis_contig1:7800794..7800979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7800795..7800979 +
1695739729.163946-CDS-S-ischiensis_contig1:7800794..78009791695739729.163946-CDS-S-ischiensis_contig1:7800794..7800979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7800795..7800979 +
1622815486.1944623-CDS-S-ischiensis_contig1:7801630..78021141622815486.1944623-CDS-S-ischiensis_contig1:7801630..7802114Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7801631..7802114 +
1695739729.1762693-CDS-S-ischiensis_contig1:7801630..78021141695739729.1762693-CDS-S-ischiensis_contig1:7801630..7802114Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7801631..7802114 +
1622815486.215258-CDS-S-ischiensis_contig1:7803589..78039461622815486.215258-CDS-S-ischiensis_contig1:7803589..7803946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7803590..7803946 +
1695739729.1844711-CDS-S-ischiensis_contig1:7803589..78039461695739729.1844711-CDS-S-ischiensis_contig1:7803589..7803946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7803590..7803946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1144.1

>prot_S-ischiensis_contig1.1144.1 ID=prot_S-ischiensis_contig1.1144.1|Name=mRNA_S-ischiensis_contig1.1144.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=342bp
QLEGGQSPEAVVVAQEQCPIVQLDLGRTRTALPGVPPECDVLLAMTRRRA
LLLYFPCAPGSRMLPPFETAIDLDILPARLSTAGEGRHPELGGCLWAKPA
QPPNHLNQRRRDPSPGGPGNGEGGAGPDPSSASTGQAGGAAAAVATDANL
RPRPVSCALIAQPGGRLWRVGLYDGEVESTHRPTPTLGAILAGWRGGGDG
GQQAALGTVDLGRLQVIDVGGSEAVLCWRLSGGGGDEGTGGVILLQPSTD
TIVDCHVGLGEIKDISVPRVVPGDAAAAAAATATTATGEPPPLVELAATG
PCVLHGRDGVISRLSYSTTPSRLPALLAQAPLSLSAASTAAS
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mRNA from alignment at S-ischiensis_contig1:7800795..7803948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1144.1 ID=mRNA_S-ischiensis_contig1.1144.1|Name=mRNA_S-ischiensis_contig1.1144.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3154bp|location=Sequence derived from alignment at S-ischiensis_contig1:7800795..7803948+ (Schizocladia ischiensis KU_0333)
CAGCTCGAGGGCGGCCAGTCCCCAGAGGCGGTGGTGGTTGCACAGGAACA
GTGCCCCATTGTGCAGCTGGACCTGGGCCGGACACGAACAGCGCTACCGG
GAGTGCCGCCCGAGTGCGATGTTCTGCTGGCCATGACCCGCCGGAGAGCC
CTCCTGCTCTACTTTCCTTGCGCCCCGGGCTCAAGGTGATGCGCTATTTC
GAAGCATGCTTGCATTGATTGTGGCAATTCTCTGGTGCACACTGAGCTGG
GCAGAGGGTGGTGGGGCTGTTGAGTTGTATCCAGTGCACTCGGCAGGGCC
TACCCCGTATGTGGATGTGTGTGAGGACAAAGCTCCGGCATGTGTAGCCA
GGCAGTGAATGATGGTATGGCTCACTGGCCCTAGGCAGCGGCCTCCCCCT
TGACCTTGACAACCGTCTGCTGAAGCAGGCATGGTGGTGAAGGGCGAAGG
GTGGACGACTGATGGGGATGCGGGAGACGTGTTTTCTGTCCGGCGTGATG
CAGTCCTTGCTGCTGGCTTCACTGGCCTTCTGCCCACAATTGTGAATGAC
GATCTTCCGGTAGAGACTGAATTTGTACTATAGTGGGCACCGCCATCGCC
CAAGCTGGCCGTTGTTGCCATTGATGTTGATGCGTGCAGGGAAGCATCGG
ACGAGCAGTAGCATGGCCCGCTCCACGAGTTTTGCTACACGCAGAGCACT
ACAAATGCCCGTTCCCGCTCGAGGAGAGGCGCCGGTGCTGTTTGCTGGCC
CGCTGCTGTCTCCTGCTGCACGCATGCTTGACAAAATGCTGCTCCCCCCC
CCCCCTGTGCCCCTGCTGCCTCCTCCCTCCGGCCAGAATGCTCCCGCCGT
TCGAGACCGCCATAGATCTGGACATCCTCCCAGCGCGACTCTCCACCGCT
GGTGAGGGGCGTCACCCCGAGCTTGGCGGCTGCCTGTGGGCCAAGCCCGC
CCAGCCCCCCAACCACCTTAACCAACGGCGACGAGACCCTTCCCCGGGCG
GCCCGGGGAATGGCGAGGGGGGGGCAGGCCCGGACCCAAGCTCGGCCTCG
ACGGGCCAGGCCGGGGGAGCTGCGGCAGCTGTGGCAACGGACGCGAATTT
GAGACCGCGCCCTGTGTCCTGCGCCCTCATCGCCCAGCCTGGGGGGCGGT
TGTGGCGGGTGGGCCTGTATGATGGTGAAGTGGAGTCCACACATCGCCCG
ACCCCTACCCTGGGGGCCATCCTTGCTGGGTGGCGCGGCGGCGGCGACGG
TGGGCAGCAGGCGGCGCTCGGGACGGTGGACCTGGGCCGCTTGCAAGTGA
TTGATGTGGGGGGATCTGAGGTGCGTTCACGAATGCACGTGTAGGGTGTG
CATGCAAGTACTTCCAGCTCCTTAGTACAGCAGTATTTCGAAGTACTTAG
AAGGTACTTGTACTGTGTGTTGCTTGAAGCTACTTGGGGCGATGAGAGGC
TACTTGCCACAGATCGCTCTCCCCGCGCTGTGGTGTCTTTGTTCCCCGTG
GGCTGTTTCTCCTGGTAGGCGAGTGGGCTCGGCTCGTCCGCCTGCTACCC
ACCCTCGATGTCTGCCGTACGAAAGGTGCTGTGACACTCCCTACAGCCTG
CAATACCTACAAGTATACCCTCTGTACGCTGCACAGCGTAAAGATCGATG
GAGGTCTCCCTCTCTTCGCACCACTTGAAAGTATGTGCTGTACACCTCAC
TTGGCTCGTCATTGTGTTTGGAAATACAGTACGTGCTACTGTATTCTGGG
CATACGTCGGAAGTAGGTACTCGAGTACATGCGTAAAGTAGGGACACCTC
TTCTTTCCCACTCGCTTGTTTGTCTTCTTGCAAAAAGCTGCCTAGTTATC
CCGAAACAATTGCCCTCAGATGCCGCCTGCACCTCCCCACCTGGGGTTAC
GCACCACACGATCGGCGATAGCTCGTGAACTCCCGCGATCCAGAAGGTGC
TGGTTGTTGCGATTTGCAGCTAATCATGTATCAGCTACTTCGAGTGCAAC
AATGATTAGGAGCCATTGGCCATCACGTAGCGGTTCGCAATCAAACGGCG
ACACTCGGCAATTTTTCGCTGCCAAAGCTAGTCCAATCAGACCCATTTTG
GCGGGGATTTGAACGGTGGAGTACTGTACTGTACATGGGTGACCTCTGTG
AGGTGCCCGAGGGTAGCCCAGGCCGTTCCCTTGCGGCGGTGCACCCCCTG
TGGGCGACAAACAAGCACAATGCATTTGAGGGTCATTCCGCCCGGTGCCC
AGACTGCACGTGGACTATTTGTTTAATTTGTAGGTGGTGTTGTGCGTGAG
TCCAGTTGTAGCTACTCGCCTGGAAATGCGTTCACCTAGTTGTCCCCGAA
CAACTCCGGCGCCAGATGGTGTAGCAACTAGTTTTCCCCGGACAACTACA
GTACCCTCTTCAGATATTGGGACTCTAGTCGGTCCGGGAAATAGCTGCCC
TCGCCAGATTGTGTGCAACTAGTTGGTCCCCGGGACAGCTGACCTCGTGG
AATCGTGTGCAACTTGTTGGTCCGGGGAACAAGTACCCTCGCCAGCCTAT
GTGCAACTATGTACTCGTAGTTGCTCACCAAACCAACTGACCTCCTGGAA
GCGTGAGCCCTACAGCAGTTGGTTGGCCTGATCTACTGTAGTAAGTACAG
TAGTTCCAACTACTCCGGAAGTACCAACTAATTGTAGTGTATTGAACAAC
CTGCAGTAGTTGTATTTGTCCGGGGTGTACACATGCTCTGAAACCCCGCC
CCCCGCCGCCCGCACCACACCTGTGCCACCCGTGCTGATGACAAGGCTGT
CCTCTGTTGGAGGCTCAGTGGCGGAGGCGGCGATGAGGGCACCGGGGGCG
TGATATTGCTCCAGCCCTCGACAGACACCATTGTGGACTGCCATGTGGGC
CTGGGGGAGATCAAAGATATCTCAGTCCCGCGGGTGGTACCGGGCGATGC
TGCTGCCGCTGCTGCTGCCACCGCCACCACCGCCACAGGCGAACCACCTC
CGCTGGTCGAGCTGGCCGCAACGGGCCCGTGTGTACTCCACGGGAGGGAC
GGGGTGATAAGCCGCCTCTCCTACTCCACCACGCCATCCAGGCTGCCTGC
GCTCCTTGCACAAGCCCCGCTGTCCCTCTCCGCCGCCTCCACCGCTGCTT
CCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7800795..7803948+

>mRNA_S-ischiensis_contig1.1144.1 ID=mRNA_S-ischiensis_contig1.1144.1|Name=mRNA_S-ischiensis_contig1.1144.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2052bp|location=Sequence derived from alignment at S-ischiensis_contig1:7800795..7803948+ (Schizocladia ischiensis KU_0333)
CAGCTCGAGGGCGGCCAGTCCCCAGAGGCGGTGGTGGTTGCACAGGAACA
GTGCCCCATTGTGCAGCTGGACCTGGGCCGGACACGAACAGCGCTACCGG
GAGTGCCGCCCGAGTGCGATGTTCTGCTGGCCATGACCCGCCGGAGAGCC
CTCCTGCTCTACTTTCCTTGCGCCCCGGGCTCAAGCAGCTCGAGGGCGGC
CAGTCCCCAGAGGCGGTGGTGGTTGCACAGGAACAGTGCCCCATTGTGCA
GCTGGACCTGGGCCGGACACGAACAGCGCTACCGGGAGTGCCGCCCGAGT
GCGATGTTCTGCTGGCCATGACCCGCCGGAGAGCCCTCCTGCTCTACTTT
CCTTGCGCCCCGGGCTCAAGAATGCTCCCGCCGTTCGAGACCGCCATAGA
TCTGGACATCCTCCCAGCGCGACTCTCCACCGCTGGTGAGGGGCGTCACC
CCGAGCTTGGCGGCTGCCTGTGGGCCAAGCCCGCCCAGCCCCCCAACCAC
CTTAACCAACGGCGACGAGACCCTTCCCCGGGCGGCCCGGGGAATGGCGA
GGGGGGGGCAGGCCCGGACCCAAGCTCGGCCTCGACGGGCCAGGCCGGGG
GAGCTGCGGCAGCTGTGGCAACGGACGCGAATTTGAGACCGCGCCCTGTG
TCCTGCGCCCTCATCGCCCAGCCTGGGGGGCGGTTGTGGCGGGTGGGCCT
GTATGATGGTGAAGTGGAGTCCACACATCGCCCGACCCCTACCCTGGGGG
CCATCCTTGCTGGGTGGCGCGGCGGCGGCGACGGTGGGCAGCAGGCGGCG
CTCGGGACGGTGGACCTGGGCCGCTTGCAAGTGATTGATGTGGGGGGATC
TGAGAATGCTCCCGCCGTTCGAGACCGCCATAGATCTGGACATCCTCCCA
GCGCGACTCTCCACCGCTGGTGAGGGGCGTCACCCCGAGCTTGGCGGCTG
CCTGTGGGCCAAGCCCGCCCAGCCCCCCAACCACCTTAACCAACGGCGAC
GAGACCCTTCCCCGGGCGGCCCGGGGAATGGCGAGGGGGGGGCAGGCCCG
GACCCAAGCTCGGCCTCGACGGGCCAGGCCGGGGGAGCTGCGGCAGCTGT
GGCAACGGACGCGAATTTGAGACCGCGCCCTGTGTCCTGCGCCCTCATCG
CCCAGCCTGGGGGGCGGTTGTGGCGGGTGGGCCTGTATGATGGTGAAGTG
GAGTCCACACATCGCCCGACCCCTACCCTGGGGGCCATCCTTGCTGGGTG
GCGCGGCGGCGGCGACGGTGGGCAGCAGGCGGCGCTCGGGACGGTGGACC
TGGGCCGCTTGCAAGTGATTGATGTGGGGGGATCTGAGGCTGTCCTCTGT
TGGAGGCTCAGTGGCGGAGGCGGCGATGAGGGCACCGGGGGCGTGATATT
GCTCCAGCCCTCGACAGACACCATTGTGGACTGCCATGTGGGCCTGGGGG
AGATCAAAGATATCTCAGTCCCGCGGGTGGTACCGGGCGATGCTGCTGCC
GCTGCTGCTGCCACCGCCACCACCGCCACAGGCGAACCACCTCCGCTGGT
CGAGCTGGCCGCAACGGGCCCGTGTGTACTCCACGGGAGGGACGGGGTGA
TAAGCCGCCTCTCCTACTCCACCACGCCATCCAGGCTGCCTGCGCTCCTT
GCACAAGCCCCGCTGTCCCTCTCCGCCGCCTCCACCGCTGCTTCCGCTGT
CCTCTGTTGGAGGCTCAGTGGCGGAGGCGGCGATGAGGGCACCGGGGGCG
TGATATTGCTCCAGCCCTCGACAGACACCATTGTGGACTGCCATGTGGGC
CTGGGGGAGATCAAAGATATCTCAGTCCCGCGGGTGGTACCGGGCGATGC
TGCTGCCGCTGCTGCTGCCACCGCCACCACCGCCACAGGCGAACCACCTC
CGCTGGTCGAGCTGGCCGCAACGGGCCCGTGTGTACTCCACGGGAGGGAC
GGGGTGATAAGCCGCCTCTCCTACTCCACCACGCCATCCAGGCTGCCTGC
GCTCCTTGCACAAGCCCCGCTGTCCCTCTCCGCCGCCTCCACCGCTGCTT
CC
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