mRNA_S-ischiensis_contig1.1143.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1143.1
Unique NamemRNA_S-ischiensis_contig1.1143.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1143.1 vs. uniprot
Match: A0A4D9D6T8_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6T8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.420e-8
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 2 
Query:   47 GSRNPAPAVTCVRQSPSGNLLAVGAADGSVSVTEFVARPPQGRRTGFQHQSHRGKPLTCLLWDTSGQRLFSGCAGGIIVLILF-----PPSAVAGVGQN 328
            GS++    VTC++  P+  +LAVG   G+V+V        Q +R    H  H+G  + CL WD  GQRL+SGC GG++V  L      P    AG G N
Sbjct:   96 GSQHVNVKVTCIKLDPTQRILAVGNILGAVNVLLLNFNGGQPQRLLHSHVLHQGS-VRCLAWDDLGQRLYSGCDGGMVVETLLARQDGPSEHGAGGGDN 193
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BLAST of mRNA_S-ischiensis_contig1.1143.1 vs. uniprot
Match: A0A8K1CNV4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNV4_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-6
Identity = 29/79 (36.71%), Postives = 39/79 (49.37%), Query Frame = 2 
Query:   50 SRNPAPAVTCVRQSPSGNLLAVGAADGSVSVTEFVARPPQGRRTGFQHQSHRGKPLTCLLWDTSGQRLFSGCAGGIIVL 286
            S N    V+C+   P+   L VG + G V           G +  F H  H G P+TCLLWD  G +L+S C GG++ L
Sbjct:   97 SNNDRIGVSCLSICPAQKRLVVGTSRGVVYGILLTDYNKIGEKVEFSHDFHSGFPVTCLLWDRQGVKLYSACNGGMVAL 175
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4D9D6T8_9STRA8.420e-838.38PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A8K1CNV4_PYTOL1.010e-636.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7800359..7800719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.8702857-CDS-S-ischiensis_contig1:7800358..78007181622815376.8702857-CDS-S-ischiensis_contig1:7800358..7800718Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7800359..7800718 +
1695739665.8526375-CDS-S-ischiensis_contig1:7800358..78007181695739665.8526375-CDS-S-ischiensis_contig1:7800358..7800718Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7800359..7800718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1143.1prot_S-ischiensis_contig1.1143.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7800359..7800718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1143.1

>prot_S-ischiensis_contig1.1143.1 ID=prot_S-ischiensis_contig1.1143.1|Name=mRNA_S-ischiensis_contig1.1143.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
RSTGCDGATPVVSPWRLSQSGTGRDLRAAEPERQFACRRGGRRLRVGDRV
CRTPPPGQENWIPAPESSRQAIDVSAVGHIRATPVLRVCGWHHCPYSIPS
LRRGRSGAKQWGYPSTGPAA
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mRNA from alignment at S-ischiensis_contig1:7800359..7800719+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1143.1 ID=mRNA_S-ischiensis_contig1.1143.1|Name=mRNA_S-ischiensis_contig1.1143.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=361bp|location=Sequence derived from alignment at S-ischiensis_contig1:7800359..7800719+ (Schizocladia ischiensis KU_0333)
CGCTCTACAGGATGTGACGGTGCTACACCCGTCGTCAGCCCGTGGAGGCT
CTCGCAATCCGGCACCGGCCGTGACCTGCGTGCGGCAGAGCCCGAGCGGC
AATTTGCTTGCCGTAGGGGCGGCCGACGGCTCCGTGTCGGTGACCGAGTT
TGTCGCACGCCCCCCCCAGGGCAGGAGAACTGGATTCCAGCACCAGAGTC
ATCGCGGCAAGCCATTGACGTGTCTGCTGTGGGACACATCAGGGCAACGC
CTGTTCTCAGGGTGTGCGGGTGGCATCATTGTCCTTATTCTATTCCCTCC
CTCCGCCGTGGCCGGAGTGGGGCAAAACAGTGGGGCTACCCAAGCACCGG
ACCAGCAGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7800359..7800719+

>mRNA_S-ischiensis_contig1.1143.1 ID=mRNA_S-ischiensis_contig1.1143.1|Name=mRNA_S-ischiensis_contig1.1143.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig1:7800359..7800719+ (Schizocladia ischiensis KU_0333)
CGCTCTACAGGATGTGACGGTGCTACACCCGTCGTCAGCCCGTGGAGGCT
CTCGCAATCCGGCACCGGCCGTGACCTGCGTGCGGCAGAGCCCGAGCGGC
AATTTGCTTGCCGTAGGGGCGGCCGACGGCTCCGTGTCGGTGACCGAGTT
TGTCGCACGCCCCCCCCAGGGCAGGAGAACTGGATTCCAGCACCAGAGTC
ATCGCGGCAAGCCATTGACGTGTCTGCTGTGGGACACATCAGGGCAACGC
CTGTTCTCAGGGTGTGCGGGTGGCATCATTGTCCTTATTCTATTCCCTCC
CTCCGCCGTGGCCGGAGTGGGGCAAAACAGTGGGGCTACCCAAGCACCGG
ACCAGCAGCACGCTCTACAGGATGTGACGGTGCTACACCCGTCGTCAGCC
CGTGGAGGCTCTCGCAATCCGGCACCGGCCGTGACCTGCGTGCGGCAGAG
CCCGAGCGGCAATTTGCTTGCCGTAGGGGCGGCCGACGGCTCCGTGTCGG
TGACCGAGTTTGTCGCACGCCCCCCCCAGGGCAGGAGAACTGGATTCCAG
CACCAGAGTCATCGCGGCAAGCCATTGACGTGTCTGCTGTGGGACACATC
AGGGCAACGCCTGTTCTCAGGGTGTGCGGGTGGCATCATTGTCCTTATTC
TATTCCCTCCCTCCGCCGTGGCCGGAGTGGGGCAAAACAGTGGGGCTACC
CAAGCACCGGACCAGCAGCA
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