mRNA_S-ischiensis_contig1.1142.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1142.1
Unique NamemRNA_S-ischiensis_contig1.1142.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7794631..7796832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTRAM/LAG1/CLN8 homology domain
Ec32 orthologEc-17_001340.1
Exons1
Model size2202
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1142.1prot_S-ischiensis_contig1.1142.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7794709..7795713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.0903847-UTR-S-ischiensis_contig1:7794630..77947081622815486.0903847-UTR-S-ischiensis_contig1:7794630..7794708Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7794631..7794708 +
1695739729.1361039-UTR-S-ischiensis_contig1:7794630..77947081695739729.1361039-UTR-S-ischiensis_contig1:7794630..7794708Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7794631..7794708 +
1622815486.1149487-UTR-S-ischiensis_contig1:7795713..77968321622815486.1149487-UTR-S-ischiensis_contig1:7795713..7796832Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7795714..7796832 +
1695739729.153279-UTR-S-ischiensis_contig1:7795713..77968321695739729.153279-UTR-S-ischiensis_contig1:7795713..7796832Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7795714..7796832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.104537-CDS-S-ischiensis_contig1:7794708..77957131622815486.104537-CDS-S-ischiensis_contig1:7794708..7795713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7794709..7795713 +
1695739729.1446295-CDS-S-ischiensis_contig1:7794708..77957131695739729.1446295-CDS-S-ischiensis_contig1:7794708..7795713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7794709..7795713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1142.1

>prot_S-ischiensis_contig1.1142.1 ID=prot_S-ischiensis_contig1.1142.1|Name=mRNA_S-ischiensis_contig1.1142.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=335bp
MCKAHVPSAESNPVPAYTLGKWVWAPAAVALGAWMLAWGPERETGAWDPA
LPTWDAGYPVFLLCEIVRLGGVRLLPVWWKRVAGRADLPAPDIQETFGGN
LVSLGMSLYLIGNLLVGYSGRLTDELPFWHANGDNRTLCHGLSVTMLAYL
LHDLLQICRCWRVVPNPAMVAHHVVFIVITGLGTTYPQPLYLYRVHAILF
SAEASTPLLNSRWILRNIVRLNKNAAVMTAISLGFFLLFTTTRIGLYLFL
IMDLFRRTGELGMPPPFQKVFTAAVALSYLINLHWFSVIIETLRKRKVRT
PSTDTPSSGLAAKPAPAEATGARAPGAGGSLKVE*
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mRNA from alignment at S-ischiensis_contig1:7794631..7796832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1142.1 ID=mRNA_S-ischiensis_contig1.1142.1|Name=mRNA_S-ischiensis_contig1.1142.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2202bp|location=Sequence derived from alignment at S-ischiensis_contig1:7794631..7796832+ (Schizocladia ischiensis KU_0333)
TAGAGCGCCCCGGGTTTTGTGGGACGTGGCCCCGCCAGCACGTGCGCCTG
GGGCAGTGTGCACCCCACAGAGGTGGCTATGTGCAAAGCTCATGTTCCCT
CGGCCGAGAGCAACCCCGTACCAGCGTACACCTTGGGGAAGTGGGTTTGG
GCGCCTGCGGCGGTAGCGCTGGGGGCATGGATGCTCGCTTGGGGCCCCGA
GCGGGAAACCGGAGCATGGGACCCGGCTCTCCCGACATGGGACGCGGGTT
ATCCCGTGTTTCTGCTGTGCGAAATTGTACGGTTGGGGGGCGTGCGCCTT
TTGCCCGTTTGGTGGAAGCGGGTAGCGGGGAGGGCGGATCTTCCCGCGCC
TGACATTCAGGAGACGTTCGGGGGGAATTTGGTATCCCTCGGCATGTCCC
TTTACCTCATCGGCAACCTCCTGGTCGGCTACAGCGGGCGCTTGACGGAC
GAGCTGCCGTTCTGGCATGCGAACGGTGACAATCGCACGTTGTGCCATGG
TCTGTCGGTCACGATGCTGGCGTACCTCCTGCACGACCTGCTGCAGATAT
GTCGGTGCTGGCGGGTAGTCCCCAACCCTGCCATGGTGGCGCACCACGTG
GTGTTTATCGTGATCACGGGGCTGGGCACGACATACCCGCAGCCGCTGTA
CCTGTACCGGGTGCACGCTATCCTCTTCTCCGCGGAGGCCTCCACTCCGC
TGCTCAACTCGCGGTGGATCCTGCGGAACATTGTGCGGCTCAACAAAAAC
GCGGCCGTCATGACCGCCATCTCCCTGGGATTCTTCCTCCTCTTCACGAC
CACGCGCATCGGCCTCTACCTCTTCCTCATCATGGACCTGTTCAGGCGGA
CCGGGGAGCTCGGCATGCCGCCGCCGTTCCAGAAGGTCTTCACAGCGGCC
GTGGCCTTGTCCTACCTCATCAACCTGCACTGGTTCTCCGTCATTATCGA
AACCCTCAGGAAGAGGAAGGTCAGGACACCCAGCACCGACACCCCGTCCT
CGGGTTTGGCAGCAAAACCCGCCCCGGCGGAAGCGACGGGCGCGAGGGCG
CCCGGGGCCGGAGGCTCGCTCAAGGTGGAGTGACCCAGGGCGACCAACTT
CCAGTTTTTTCCCCACAACGAGCAGAACAGTACTTGGGTAAGGAAGTGGG
GCCTTTTTTGTGGTTGTACTAATTTTAACATTATCGGGATTTTGTGGTAT
AGTAGCTTCTGAGCTACTGCAGTACGAGTAGTAGTTAGTTCAGTACTCCG
AGGTAGGTTGTACTCGCGAATGCAAGCATGTTGTTCAAGAGCCATGGGGT
GATCGGGTCGCCAGCTATATACGCATATAGTAACTTCTGAACTACTAGTG
TTTAGTTAAGTACCTCGAAGCTAGTGTTGTTGCTTGTGAGCCGCACGGTG
ATCGGTGGGTCGCCAAGAGGCGCACCCAGCCCTCTGGGGCTGGGGAGGTA
TAATTAGCCGCCTTAGCGACCAAAACCTAGAGGCATGTACATGTGCTGTT
ATCATAGACGTAGTTTTCCGCATCCCTATAGCCTGCGTGAGTGCTTGCGG
CGTGCGTGGAGCCGCGTGTCTCAGAGTGCGGTTTCATCCACGTTCCGCGT
ACAAGCCCCCAGTGCGTCCTCCCTACAGTAGTCCTCTCTCTATCAAGCAC
AGTGTGCGCCCGGGGCGCAGCTGGCGAGAGAGGCCTCTCTTCCTCGGCTA
GACCCCTTATTGCTTTGGTATGGGTACTTGTACTTGCGTAGTGAGGGGCG
TGCAGTTCCTCTTGTGTTCATCGTTGACTCCCGTTAGTATTGTCGTATGT
GTGTCTGCGTTAGTGAAGCGCGCGACATTGGCGAGGCGGGGCGGTTGTGC
ACGCCAATGCCATGCCCTGTCCCACGCGCGTGTGTCGTGTGTTTTCTTTT
CTTGTCGATGGTGATGAAGCATGGAAGTAGGGAGAGCTACTGTAGCTGCC
AAGCATACCTCAAGTACTTGCAAGTAGTTGCAAGTACAAATTGTGGCGGG
CACGGGAGGGTGGTCGCTCCGAGCTCGGAAGAGCACTCGTGATCAATCGT
GCCATGGCCCATCTCTGTACTGCGCCAAGCTCCGTTGGATGTGGGTACCT
ACTTTGAAGTGCGTACAAGTTCAGTATTTGGTGTGTGTGCTCAGTCATGA
GATCTGCGTGATGTCAAGTAGTCATAATAGTAAGTGAGCAGGCACTTTCC
AG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7794631..7796832+

>mRNA_S-ischiensis_contig1.1142.1 ID=mRNA_S-ischiensis_contig1.1142.1|Name=mRNA_S-ischiensis_contig1.1142.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2010bp|location=Sequence derived from alignment at S-ischiensis_contig1:7794631..7796832+ (Schizocladia ischiensis KU_0333)
ATGTGCAAAGCTCATGTTCCCTCGGCCGAGAGCAACCCCGTACCAGCGTA
CACCTTGGGGAAGTGGGTTTGGGCGCCTGCGGCGGTAGCGCTGGGGGCAT
GGATGCTCGCTTGGGGCCCCGAGCGGGAAACCGGAGCATGGGACCCGGCT
CTCCCGACATGGGACGCGGGTTATCCCGTGTTTCTGCTGTGCGAAATTGT
ACGGTTGGGGGGCGTGCGCCTTTTGCCCGTTTGGTGGAAGCGGGTAGCGG
GGAGGGCGGATCTTCCCGCGCCTGACATTCAGGAGACGTTCGGGGGGAAT
TTGGTATCCCTCGGCATGTCCCTTTACCTCATCGGCAACCTCCTGGTCGG
CTACAGCGGGCGCTTGACGGACGAGCTGCCGTTCTGGCATGCGAACGGTG
ACAATCGCACGTTGTGCCATGGTCTGTCGGTCACGATGCTGGCGTACCTC
CTGCACGACCTGCTGCAGATATGTCGGTGCTGGCGGGTAGTCCCCAACCC
TGCCATGGTGGCGCACCACGTGGTGTTTATCGTGATCACGGGGCTGGGCA
CGACATACCCGCAGCCGCTGTACCTGTACCGGGTGCACGCTATCCTCTTC
TCCGCGGAGGCCTCCACTCCGCTGCTCAACTCGCGGTGGATCCTGCGGAA
CATTGTGCGGCTCAACAAAAACGCGGCCGTCATGACCGCCATCTCCCTGG
GATTCTTCCTCCTCTTCACGACCACGCGCATCGGCCTCTACCTCTTCCTC
ATCATGGACCTGTTCAGGCGGACCGGGGAGCTCGGCATGCCGCCGCCGTT
CCAGAAGGTCTTCACAGCGGCCGTGGCCTTGTCCTACCTCATCAACCTGC
ACTGGTTCTCCGTCATTATCGAAACCCTCAGGAAGAGGAAGGTCAGGACA
CCCAGCACCGACACCCCGTCCTCGGGTTTGGCAGCAAAACCCGCCCCGGC
GGAAGCGACGGGCGCGAGGGCGCCCGGGGCCGGAGGCTCGCTCAAGGTGG
AGTGAATGTGCAAAGCTCATGTTCCCTCGGCCGAGAGCAACCCCGTACCA
GCGTACACCTTGGGGAAGTGGGTTTGGGCGCCTGCGGCGGTAGCGCTGGG
GGCATGGATGCTCGCTTGGGGCCCCGAGCGGGAAACCGGAGCATGGGACC
CGGCTCTCCCGACATGGGACGCGGGTTATCCCGTGTTTCTGCTGTGCGAA
ATTGTACGGTTGGGGGGCGTGCGCCTTTTGCCCGTTTGGTGGAAGCGGGT
AGCGGGGAGGGCGGATCTTCCCGCGCCTGACATTCAGGAGACGTTCGGGG
GGAATTTGGTATCCCTCGGCATGTCCCTTTACCTCATCGGCAACCTCCTG
GTCGGCTACAGCGGGCGCTTGACGGACGAGCTGCCGTTCTGGCATGCGAA
CGGTGACAATCGCACGTTGTGCCATGGTCTGTCGGTCACGATGCTGGCGT
ACCTCCTGCACGACCTGCTGCAGATATGTCGGTGCTGGCGGGTAGTCCCC
AACCCTGCCATGGTGGCGCACCACGTGGTGTTTATCGTGATCACGGGGCT
GGGCACGACATACCCGCAGCCGCTGTACCTGTACCGGGTGCACGCTATCC
TCTTCTCCGCGGAGGCCTCCACTCCGCTGCTCAACTCGCGGTGGATCCTG
CGGAACATTGTGCGGCTCAACAAAAACGCGGCCGTCATGACCGCCATCTC
CCTGGGATTCTTCCTCCTCTTCACGACCACGCGCATCGGCCTCTACCTCT
TCCTCATCATGGACCTGTTCAGGCGGACCGGGGAGCTCGGCATGCCGCCG
CCGTTCCAGAAGGTCTTCACAGCGGCCGTGGCCTTGTCCTACCTCATCAA
CCTGCACTGGTTCTCCGTCATTATCGAAACCCTCAGGAAGAGGAAGGTCA
GGACACCCAGCACCGACACCCCGTCCTCGGGTTTGGCAGCAAAACCCGCC
CCGGCGGAAGCGACGGGCGCGAGGGCGCCCGGGGCCGGAGGCTCGCTCAA
GGTGGAGTGA
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