mRNA_S-ischiensis_contig1.1136.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1136.1
Unique NamemRNA_S-ischiensis_contig1.1136.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1136.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.930e-15
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:   91 FAGVTRDIETIAQGDLPASMQLLASLQAAGGSGSKPSANASIFERLSSTTTESRRLKVNDKNKVQENFRRKVHSTG--RKKDFKVVGGHGHPPPAPTFQPVVPGARGFPAG 417
            FAGVT D+E I QG +P SMQL+A + A  G         S+F+RL+STTTESRR KVND++++ EN RRK       +KKDFKVV GH            +PGA G P G
Sbjct: 1587 FAGVTSDLEAIRQGRMPESMQLVARVNAEAGG------KVSVFDRLASTTTESRRQKVNDRDQLHENLRRKAKQDAFRKKKDFKVVPGH------------LPGANGLPTG 1679
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BLAST of mRNA_S-ischiensis_contig1.1136.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.590e-15
Identity = 56/118 (47.46%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:   91 FAGVTRDIETIAQGDLPASMQLLASLQAAGGSGSKPSANASIFERLSSTTTESRRLKVNDKNKVQENFRRKVHSTG--RKKDFKVVGGHGHPPPAPTFQPVVPGARGFPAGL-GGSGG 435
            FAGVT D++ I +G +P SMQL+A + A  G         S+F+RL+STTTESRR KVND++++ EN RRK       +KKDFKVV GH            +PGA G P G  GG GG
Sbjct:  520 FAGVTSDLQAIREGRMPESMQLVARVNAEAGG------KVSVFDRLASTTTESRRQKVNDRDQLHENLRRKAKQDAFRKKKDFKVVPGH------------LPGANGLPTGTTGGPGG 619
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW93_9PHAE2.930e-1548.65Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LNZ6_ECTSI6.590e-1547.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7740164..7743319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size675
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1136.1prot_S-ischiensis_contig1.1136.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7740164..7743318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.4990704-CDS-S-ischiensis_contig1:7740163..77402461622815485.4990704-CDS-S-ischiensis_contig1:7740163..7740246Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7740164..7740246 +
1695739728.7437701-CDS-S-ischiensis_contig1:7740163..77402461695739728.7437701-CDS-S-ischiensis_contig1:7740163..7740246Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7740164..7740246 +
1622815485.5128524-CDS-S-ischiensis_contig1:7741376..77415891622815485.5128524-CDS-S-ischiensis_contig1:7741376..7741589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7741377..7741589 +
1695739728.7538164-CDS-S-ischiensis_contig1:7741376..77415891695739728.7538164-CDS-S-ischiensis_contig1:7741376..7741589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7741377..7741589 +
1622815485.5262866-CDS-S-ischiensis_contig1:7742097..77422881622815485.5262866-CDS-S-ischiensis_contig1:7742097..7742288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7742098..7742288 +
1695739728.7659318-CDS-S-ischiensis_contig1:7742097..77422881695739728.7659318-CDS-S-ischiensis_contig1:7742097..7742288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7742098..7742288 +
1622815485.5391433-CDS-S-ischiensis_contig1:7743133..77433181622815485.5391433-CDS-S-ischiensis_contig1:7743133..7743318Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7743134..7743318 +
1695739728.7775626-CDS-S-ischiensis_contig1:7743133..77433181695739728.7775626-CDS-S-ischiensis_contig1:7743133..7743318Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7743134..7743318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1136.1

>prot_S-ischiensis_contig1.1136.1 ID=prot_S-ischiensis_contig1.1136.1|Name=mRNA_S-ischiensis_contig1.1136.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=224bp
AAPVPRPEDVVSDDMEEDEFNDDDELDGSMFAGVTRDIETIAQGDLPASM
QLLASLQAAGGSGSKPSANASIFERLSSTTTESRRLKVNDKNKVQENFRR
KVHSTGRKKDFKVVGGHGHPPPAPTFQPVVPGARGFPAGLGGSGGSWDAT
ATGTGDAWGGSPGGEVRPTSASSTQGEPMLGGSNSHGEDDAPSSLPAAPL
GRPRGGAGGRPQSPADAHALPAAP
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mRNA from alignment at S-ischiensis_contig1:7740164..7743319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1136.1 ID=mRNA_S-ischiensis_contig1.1136.1|Name=mRNA_S-ischiensis_contig1.1136.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3156bp|location=Sequence derived from alignment at S-ischiensis_contig1:7740164..7743319+ (Schizocladia ischiensis KU_0333)
GCGGCTCCTGTGCCGCGGCCAGAGGACGTTGTGAGCGACGACATGGAGGA
AGACGAGTTCAACGACGACGACGAGTTGGATGGGTGAGTGGGGCCGCGCC
GCTGGTGGTCATATGCGGGAGTAGATGTACAAGTTGTCTTGGAAGAGTGT
GGCTTTGTGCACCCCGTATACTCGAGTGCAAGTGTGTAAAGCTCTAGCTT
TCTCTCTCTCGCCCTCTTTAGTTTTGTTCAGGGAATGTTTTCCGCCGAGT
ACACTATCGATCGGGTTGGCTCAAACATACTCGCGGGAAATCAGCCTCAG
CCAGGCAGTTGTTGTGTCCGAGGGTTTTCAGGTGAATCCGACAGTGCTTG
GCAAAGATTGTTCTCCTGGCGTAACGGTATGGGGTGCACCATGATTCCAA
TGACTATACTTAGGGAAGGCACATTGGTGGTGGTGGTGGGGGTGGTGGCG
GCGGTGAGGATGGAAGAGCGACAGTGCACCACATTATGCGTGAGTGTCTC
CAGTACAATGCCGCCAGGTTGACCCTTGACGCCGCCCTCTCTGCAGCTCT
CGCAGTAGAATGGGATATGGCAGATTTTGTGCCCGTACCCCTACTGCACT
GCACAGACAATAGCCCTCTTGGAACCAGCGGGTGAGCACGTCGGGTGGCC
AGTGGAGAAAGAGAGTGGTGTCGAGCCTGCAGTGAAAAATTTCCTTGTTT
CCGTGTGGTGTTTGCGGTTGGGGCGAGTACTGTAGGTAGCTCAGATGGTG
AACTTGGTCCCCCCCCTGCCGGACCCCGGCATGGCGAGGGACCCCTCCCC
CCTGGTGGGCCTCGGCCTAGCACGGAGGGCCTAACAGCCCCCCCCCACCT
GGGGGGGGTGGGTGGGTGTGGAAATGGCCACCCCTTCGCCCCTGGCGGAG
GTGTGCCCCACCCTACCCCACCCTGGCTCTGCCAGGTTTTTTTAAGGGAG
GGGGCCTCCTCCGTCTCGGTGGAGGCGCGGGGTCAATGGTCTCAGAACTA
TGGCAAGCACAGTGTCAGTACATACATACCACTACAGTATATCCCTAACT
ACTTCAACACAAGTGGGTGTGCAGGTGTACAAGGGTGCCCTCCTCCTCCT
CCCCCTCCTGCTCTTTCTCCTCTCCCCCGTATGCATTCGCGGCAACCCGC
CCCCTTGTTCCAAGCAAACGCTCCCCACCAAGCCCTCCCCCCGCCCCCGC
CCCAAACCCCCAGCTCCATGTTCGCAGGCGTGACCCGGGACATTGAGACC
ATCGCCCAGGGGGACCTGCCGGCATCCATGCAGCTTCTGGCCAGCCTGCA
AGCGGCTGGTGGCAGCGGCAGCAAGCCGTCGGCGAACGCCTCTATCTTTG
AGCGCTTGTCGAGCACCACTACGGAGAGCCGCCGCCTCAAGGTCAACGAC
AAGAACAAGGTGCAGGAGAACTTCAGGTGAGCGACCGCGTTCAGGCACCA
TTCATCTCTCATAAGTTGGCGGCGGGTTGGCGGCAGCGCGGAAGTGAAAA
CCAGGCCAGGGCACGGAAGGAGAGAAGATCGTTGGCCGTTTTGTGTATGC
TGGTGGAATTGTTGTGGCCCCGCTGATGACTTGTGCGTCGCGCCCAAAGA
TGGATGAGACAAGGGCCTAATTGAGGGAGGAGAGGGGGTTTTGTAGCATG
CATGTCTACTCTACATACTACGAGTACGTGTGTTGGTGTTTTGTACTCGT
ACAGGAGGTTGTAGAGCTGTGAACCGGCCTGACCATAACCACAGCTTGGG
CGGGGTTGGCACCCACGCACACAACACACATGGAAACGCACGCACTGTAC
CAAGCCTGCTTGCACACCCACCCGCGCGCACACGCACACACTTGTGCACA
CTCTTGCACCCCAACACGTGGGCACACACGCACTCACACAAACGCACGAC
GCACGCACGCACACACGCATATGCACGCACACAGACGCAAGGTGCACAGC
ACAGGCCGCAAGAAAGACTTCAAGGTTGTCGGAGGTCATGGACACCCTCC
GCCCGCTCCCACCTTCCAACCGGTGGTCCCGGGAGCGCGCGGTTTCCCGG
CGGGCCTAGGGGGTAGCGGCGGCAGCTGGGACGCCACCGCAACGGGAACA
GGGGACGCTTGGGGGGGCTCACCAGGTGAGAGCACGGCGAGGGGAGTGGA
GAGGTGCACGGGGGGGCGGGGGGGGGGGGGTATTCGAGACCTCTTGGCCG
TATTTAGCCTCATGGCCATGGACCATACGTCCCGTAGGTGGCGACCCCTC
ACAGGGGACGTACAGGTGCAGGGTATTTGAGAGGGTTGTGCCTTAGCCGC
AAGCTCATGGCCGTCGATCATGCGCCCCACTTACAGTACATGGGCCACCC
TAAGGGACGGAGGGGTACAATCACGAGTTGCTTGCTGCAGCCGCAGGTAT
GACCGTTGACTGCCACCTGGGGCATGGTGTAGATCCAGCTGTGCCGGACA
GAGCCGCGCTGTCCTGTTTTGCTGGGGGAGTGTTTTGATTCGACCCGGGC
GGCTCGGGGGCTGCTCGCTCTGCTGAAGACTGGTGGGAGGGGCAAAAGCG
AGATATTTCCCAAGTACAGCTACTATACGTACTTCGAAGTAGTTGGGAAT
ACGGGCATGTACTTTGAAGCACCGTGAGCACTAATACAGTAGTACGAGTA
CTACAGTACTATGTACTCGTACTACAGTAGTACTCCCCAGCACGAGTACT
ACTAGGACACGGCAGGCAAAGCTTTCACCGTACTTCCAAGGATGAATGAA
ATGCCATGTGTGGGCCACGCCAAGCCCCATTTCGTGAGCAACAATGTCCG
CATTCACCAGTCTCATAGAATGACGGTCTCATCGTCTTCCTCGTTCTGCC
CCCACTCCCGCCGACCCGCCCTCCCTCCCCCTCTACCTCGCCCCACTCCG
CCCACGACACTGCACGCCCCAACCACCATCTCCTGCGTGTACACGCCTCC
CGGCCCTCGCGTCTTGTCAGGAGGGGAGGTGAGGCCCACTTCTGCCTCGA
GCACACAGGGGGAGCCCATGCTGGGAGGGTCGAACTCTCACGGGGAGGAT
GACGCGCCATCGTCGTTGCCCGCAGCCCCGCTGGGGCGCCCCCGTGGCGG
AGCAGGGGGGCGGCCCCAGTCACCGGCGGACGCGCACGCGCTCCCTGCGG
CACCGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7740164..7743319+

>mRNA_S-ischiensis_contig1.1136.1 ID=mRNA_S-ischiensis_contig1.1136.1|Name=mRNA_S-ischiensis_contig1.1136.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1344bp|location=Sequence derived from alignment at S-ischiensis_contig1:7740164..7743319+ (Schizocladia ischiensis KU_0333)
GCGGCTCCTGTGCCGCGGCCAGAGGACGTTGTGAGCGACGACATGGAGGA
AGACGAGTTCAACGACGACGACGAGTTGGATGGGCGGCTCCTGTGCCGCG
GCCAGAGGACGTTGTGAGCGACGACATGGAGGAAGACGAGTTCAACGACG
ACGACGAGTTGGATGGCTCCATGTTCGCAGGCGTGACCCGGGACATTGAG
ACCATCGCCCAGGGGGACCTGCCGGCATCCATGCAGCTTCTGGCCAGCCT
GCAAGCGGCTGGTGGCAGCGGCAGCAAGCCGTCGGCGAACGCCTCTATCT
TTGAGCGCTTGTCGAGCACCACTACGGAGAGCCGCCGCCTCAAGGTCAAC
GACAAGAACAAGGTGCAGGAGAACTTCAGCTCCATGTTCGCAGGCGTGAC
CCGGGACATTGAGACCATCGCCCAGGGGGACCTGCCGGCATCCATGCAGC
TTCTGGCCAGCCTGCAAGCGGCTGGTGGCAGCGGCAGCAAGCCGTCGGCG
AACGCCTCTATCTTTGAGCGCTTGTCGAGCACCACTACGGAGAGCCGCCG
CCTCAAGGTCAACGACAAGAACAAGGTGCAGGAGAACTTCAGACGCAAGG
TGCACAGCACAGGCCGCAAGAAAGACTTCAAGGTTGTCGGAGGTCATGGA
CACCCTCCGCCCGCTCCCACCTTCCAACCGGTGGTCCCGGGAGCGCGCGG
TTTCCCGGCGGGCCTAGGGGGTAGCGGCGGCAGCTGGGACGCCACCGCAA
CGGGAACAGGGGACGCTTGGGGGGGCTCACCAGACGCAAGGTGCACAGCA
CAGGCCGCAAGAAAGACTTCAAGGTTGTCGGAGGTCATGGACACCCTCCG
CCCGCTCCCACCTTCCAACCGGTGGTCCCGGGAGCGCGCGGTTTCCCGGC
GGGCCTAGGGGGTAGCGGCGGCAGCTGGGACGCCACCGCAACGGGAACAG
GGGACGCTTGGGGGGGCTCACCAGGAGGGGAGGTGAGGCCCACTTCTGCC
TCGAGCACACAGGGGGAGCCCATGCTGGGAGGGTCGAACTCTCACGGGGA
GGATGACGCGCCATCGTCGTTGCCCGCAGCCCCGCTGGGGCGCCCCCGTG
GCGGAGCAGGGGGGCGGCCCCAGTCACCGGCGGACGCGCACGCGCTCCCT
GCGGCACCGGAGGGGAGGTGAGGCCCACTTCTGCCTCGAGCACACAGGGG
GAGCCCATGCTGGGAGGGTCGAACTCTCACGGGGAGGATGACGCGCCATC
GTCGTTGCCCGCAGCCCCGCTGGGGCGCCCCCGTGGCGGAGCAGGGGGGC
GGCCCCAGTCACCGGCGGACGCGCACGCGCTCCCTGCGGCACCG
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