mRNA_S-ischiensis_contig1.1117.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1117.1
Unique NamemRNA_S-ischiensis_contig1.1117.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: A0A6H5JX10_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX10_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 2.140e-71
Identity = 136/246 (55.28%), Postives = 174/246 (70.73%), Query Frame = 1 
Query:  253 GLTPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQN-LDLSQLKKNVWYV--DQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDTLNEDQRWAIARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGYT 981
            G TP+WE CCG D  Y  SM++VL H FG   + GNG+ELYF+V+ERG  GKV DV L+  G + RVTD NK+ FV  A RRR  GGAE  +AA+RSG+ DVIP + L++LLP E+ ++VSGPQ  ++LS+L+ NVWYV  D+GF  SH  +RWFW+WA E L E  RR+LLLFWSGSSR P FGF+DD LNED  WAI +    A+ CP  +TCDRR+ LP Y S EA  K++ +++  G +GYT
Sbjct: 1187 GSTPTWEECCGRDTQYLESMRKVLAHEFG-KGEGGNGMELYFSVSERGVDGKVADVPLLAGGENKRVTDNNKQEFVNLATRRRALGGAEKAIAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSKLRTNVWYVEGDEGFGCSHRSVRWFWEWANE-LTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHSWAIDKGPA-ANVCPTASTCDRRMSLPQYSSKEAAFKFLNITLELGCLGYT 1429
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: D8LKA6_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA6_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 7.740e-61
Identity = 122/214 (57.01%), Postives = 152/214 (71.03%), Query Frame = 1 
Query:  253 GLTPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQN-LDLSQLKKNVWYV--DQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDTLNEDQRWAIARLQRKADSCPEVTT 885
            G TP+WE CCG D  Y  SM++VL H FG   + GNG+ELYF+V+ERG  GKV DV L+  G + RVTD+NK+ FV  A RRR  GGAE  +AA+RSG+ DVIP + L++LLP E+ ++VSGPQ  ++LS+L+ NVWYV  D GF  SH  IRWFW+W  E L E  RR+LLLFWSGSSR P FGF+DD LNED RWAI +    A+ CP  +T
Sbjct: 1008 GSTPTWEDCCGRDTQYLESMRKVLAHEFG-KGEGGNGMELYFSVSERGIDGKVTDVPLLAGGENKRVTDKNKQEFVNLATRRRALGGAEKAVAALRSGMTDVIPKNLLSILLPPEVASIVSGPQGEVNLSELRTNVWYVESDGGFGCSHKSIRWFWEWTNE-LTESDRRKLLLFWSGSSRVPPFGFEDDALNEDHRWAIDKGPA-ANVCPTAST 1218
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: A0A6G0XGS7_9STRA (HECT domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGS7_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.400e-31
Identity = 91/253 (35.97%), Postives = 136/253 (53.75%), Query Frame = 1 
Query:  253 GLTPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYF------AVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDTLNEDQRWAIARLQRKADS---CPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGYTR 984
            G   +WE     + DY++S++ +LDH+F    D    LE+YF       V+E        +++L  NG + RVT+ NK+ FV+ +A R         + A + G++DVI    L    P+EL++VV GP  +DL  L+K+V Y      + H  I  FW   EE ++E   RRLLLFWSGSS  P FGFD    N    W+I  + R   +   CP+  TC+ +L LP YPS E L++ + +++ YG+ G+ R
Sbjct:  889 GERVTWEDYTAHNPDYQKSLRMILDHDF----DADPTLEMYFETCGSITVSESNSKIYTAEIELELNGKTKRVTNANKKRFVDLSAARYFCNSMPL-LNAFQKGVLDVIYKKDLKWFSPEELQSVVQGPVTIDLKALQKHVHYTRPAHSQ-HPTIAHFWAVVEE-IDESTLRRLLLFWSGSSLPPLFGFDSLGSN----WSIKLMSRDDSTQWPCPQAVTCEFQLLLPQYPSREILKEKLLVALTYGSFGFDR 1130
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: UPI001B88BC77 (E3 ubiquitin-protein ligase HACE1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88BC77)

HSP 1 Score: 126 bits (316), Expect = 7.550e-26
Identity = 79/243 (32.51%), Postives = 130/243 (53.50%), Query Frame = 1 
Query:  253 GLTPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDD-DTLNEDQRWAIARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGY 978
            G+  ++      D +Y +++Q +LDH+         GL+L F+V E    G + +VDL+PNG  + VT+ NKR +V+     R+T   + ++ +  SG  + IP   + +    ELE +VSG   +DL   + N+ Y   G+ E+  VI+WFWQ   E  ++E R  LL F +GSSR P  GF +  +      + I+ +   ++S P  +TC   L LP YPS + L+K + +++  G+ GY
Sbjct:  817 GIPVNYTDVASIDPEYAKNLQWILDHDI-----SELGLDLTFSV-ETDVFGVMEEVDLIPNGREIAVTEDNKREYVQLVTELRMTQAIKPQIESFLSGFHEYIPHGLVQLFDEYELELLVSGLPEIDLEDWRTNISYT--GYSETSPVIQWFWQIVSEFSQQE-RVLLLQFVTGSSRVPYGGFSNFSSSGFSHPFTISHVNSSSNSLPTASTCINLLKLPEYPSKKVLQKMLNIALQCGSQGY 1050
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: A0A067BRP0_SAPPC (HECT domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRP0_SAPPC)

HSP 1 Score: 125 bits (313), Expect = 1.670e-25
Identity = 88/251 (35.06%), Postives = 126/251 (50.20%), Query Frame = 1 
Query:  250 QGLTPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKV---RDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDTLNEDQRWAI---ARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGYTR 984
            Q  + SW      D   +RS+  VL H+F   S     LEL F   +R     V     V+L P+G    VT+ NK  +V A A        +A + A+R GL DV+P   +A+L P EL+ ++ G + LD++ L+ +  Y   G  E H  IR FW    E L    +R LL+FWSGSS  P FGF     +++  W+I   A    K    P+  TCDRR+ LPAY + + L   +A+++ +G  GY R
Sbjct:  779 QTSSMSWTDLVADDPVLRRSLDAVLAHDFERTSS----LELAFETCDRVEYNGVILTAQVELTPHGFETPVTNANKEEYVLALAMHHFCSNCDA-LDALRDGLFDVVPKREMALLRPDELQRLLGGDEALDMTALQASTTYGRLGSAE-HPTIRHFWA-VVEALPLATQRELLVFWSGSSLPPLFGFAH---SDEVAWSIDVVAVPAGKPSPLPQAHTCDRRIVLPAYATQDELATKLALALEFGTFGYDR 1019
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: Q8IYU2-2 (Isoform 2 of E3 ubiquitin-protein ligase HACE1 n=3 Tax=Eutheria TaxID=9347 RepID=Q8IYU2-2)

HSP 1 Score: 115 bits (289), Expect = 1.520e-24
Identity = 80/244 (32.79%), Postives = 126/244 (51.64%), Query Frame = 1 
Query:  253 GLTPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDTLNED-QRWAIARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGYT 981
            G+  +++     D +Y +++Q +LD++    SD   GLEL F+V E    G + +V L P G S+ VT  NK  +V+     R+T   + ++ A   G    IP   + +    ELE ++SG   +D+S   KN  Y   G++    VI+WFW+   ED+ +E R  LL F +GSSR P  GF +       Q + IA +    +  P  +TC   L LP YPS E L+  + ++++ G+ GYT
Sbjct:   81 GIPVNYQDVASIDPEYAKNLQWILDNDI---SD--LGLELTFSV-ETDVFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVSDWIKNTEYTS-GYEREDPVIQWFWE-VVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYT 316
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: A0A1X1BHT9_9APIC (HECT-type E3 ubiquitin transferase n=1 Tax=Babesia sp. Xinjiang TaxID=462227 RepID=A0A1X1BHT9_9APIC)

HSP 1 Score: 122 bits (307), Expect = 1.560e-24
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1 
Query:  361 GLELYFAVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDT-LNEDQRWAIARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGY 978
            GLEL+F+  E    GKV+ +DLVP+G ++ VTD NK+ ++E   R +VT G + ++ A  SG  ++IP   + +   KELE ++SG   +DL  L++NV YV   + E    I W W++ E  L++      L F +G+SR P  GF +   +   QR +I R    +D  P   TC  +L LPAYP+ E L + M  +I  G  G+
Sbjct: 4024 GLELFFST-EIDEFGKVKVIDLVPDGRNIPVTDENKQKYIELLCRHKVTNGIKDQLEAFMSGFQELIPPELICIFDDKELELLISGIPTIDLDNLRRNVEYVS--YSERSEQIVWLWEFLE-GLDQNNLAAFLQFVTGTSRVPLGGFKNLMGMRGPQRLSIHRTCG-SDRLPSAHTCFNQLDLPAYPTREKLHQKMMQAIMEGKEGF 4225
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: T0PVX2_SAPDV (HECT domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PVX2_SAPDV)

HSP 1 Score: 122 bits (305), Expect = 1.580e-24
Identity = 85/248 (34.27%), Postives = 123/248 (49.60%), Query Frame = 1 
Query:  259 TPSWELCCGPDEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVA---ERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDDDTLNEDQRWAI---ARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGYTR 984
            T  W      D   +RS++  L H+F  P D      L F +    E         V+L P G    VT+ NK  +V A A        +A + A+R GL DV+P   +A+L P EL+ V++G Q LD++ L+ +V Y   G  E H  IR FW    + + E  +R LL+FWSGSS  P FGF      ++  W+I   A    K    P+  TCDR++ LPAY + + L   +A+++ +G  GY R
Sbjct:  823 TVQWTDLVSDDPALRRSLEATLAHDFATPWD------LTFEMCDHVEYNGAMLTAQVELQPRGFETPVTNDNKEAYVLALAMHHFCSNRDA-LDAVRVGLYDVVPKREIALLRPDELQRVLAGDQALDMAALQAHVTYGRHGSAE-HPTIRHFWA-VVDGMAEPTQRELLVFWSGSSLPPLFGFAHA---DEVVWSIDVVAVPDGKTPPLPQAHTCDRKIVLPAYATQDELATKLALALEFGTFGYDR 1058
[Close]
BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: A0A482R2E6_9EURY (HECT domain-containing protein (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R2E6_9EURY)

HSP 1 Score: 110 bits (275), Expect = 6.470e-24
Identity = 65/194 (33.51%), Postives = 107/194 (55.15%), Query Frame = 1 
Query:  403 GKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDD-DTLNEDQRWAIARLQRKADSCPEVTTCDRRLYLPA-YPSLEALRKYMAMSINYGNVGY 978
            G+V++V+L+P GAS+ VTD NK  +V   A  ++T    A+  A  +G  ++IP   +++    ELE +++G   +D++ LK N  Y   GF  +  V+ WFW  A E ++E+ R RLL+F +G+S+ P  GF          ++ I +     D+ P+  TC   L LPA Y S + LR+ + ++I  G  G+
Sbjct:    4 GEVKEVELIPGGASIEVTDDNKWEYVTLLAAHKMTSSILAQTNAFLAGFHELIPPSLISIFTEAELELLIAGLPTIDIADLKANTDY--SGFRPADEVVTWFWD-AVESMDEQDRARLLMFVTGTSKVPLGGFKALQGQRGPHKFTIEKAFSSEDALPQSHTCFNTLTLPASYTSADVLREKLLIAIREGGEGF 194
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BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Match: D8U0D0_VOLCA (HECT domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U0D0_VOLCA)

HSP 1 Score: 115 bits (288), Expect = 7.730e-24
Identity = 71/231 (30.74%), Postives = 125/231 (54.11%), Query Frame = 1 
Query:  289 DEDYKRSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKVRDVDLVPNGASMRVTDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELEAVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRRLLLFWSGSSRTPAFGFDD-DTLNEDQRWAIARLQRKADSCPEVTTCDRRLYLPAYPSLEALRKYMAMSINYGNVGY 978
            D +Y +++  +L +      D  + L+L F  AE    G+   V+LVP G  +RVT+ NKR +V   AR R+T    A++ A   G   ++P H +A+    ELE ++SG  ++D+  L+ +  Y   G+  +  V+RWFW+ A  +++++ R +L+ F +G+S+ P  GF     ++  Q++ I +        P   TC  +L LP Y S E L + + ++++ GNVG+
Sbjct:  170 DPEYYKALAWMLSN------DITDVLDLTF-TAETDFFGRKETVELVPGGKDIRVTESNKREYVNLVARHRMTTSITAQINAFLEGFWQLVPRHLIAIFNDHELELLISGLPDIDVDDLRASTEY--SGYSATSPVVRWFWE-AVGEMDKQERAQLVQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGDGSRLPSAHTCFNQLDLPEYESKEQLVERLKVAVHEGNVGF 390
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX10_9PHAE2.140e-7155.28HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKA6_ECTSI7.740e-6157.01HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6G0XGS7_9STRA1.400e-3135.97HECT domain-containing protein n=1 Tax=Aphanomyces... [more]
UPI001B88BC777.550e-2632.51E3 ubiquitin-protein ligase HACE1-like n=1 Tax=Gig... [more]
A0A067BRP0_SAPPC1.670e-2535.06HECT domain-containing protein n=1 Tax=Saprolegnia... [more]
Q8IYU2-21.520e-2432.79Isoform 2 of E3 ubiquitin-protein ligase HACE1 n=3... [more]
A0A1X1BHT9_9APIC1.560e-2436.71HECT-type E3 ubiquitin transferase n=1 Tax=Babesia... [more]
T0PVX2_SAPDV1.580e-2434.27HECT domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A482R2E6_9EURY6.470e-2433.51HECT domain-containing protein (Fragment) n=1 Tax=... [more]
D8U0D0_VOLCA7.730e-2430.74HECT domain-containing protein n=1 Tax=Volvox cart... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7589976..7595646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue3.4e-59
Seed eggNOG ortholog2880.D8LKA6
KEGG koko:K10592
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size2680
Cds size837
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815483.6939485-UTR-S-ischiensis_contig1:7589975..75916651622815483.6939485-UTR-S-ischiensis_contig1:7589975..7591665Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7589976..7591665 -
1695739727.6015532-UTR-S-ischiensis_contig1:7589975..75916651695739727.6015532-UTR-S-ischiensis_contig1:7589975..7591665Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7589976..7591665 -
1622815483.7632303-UTR-S-ischiensis_contig1:7595493..75956461622815483.7632303-UTR-S-ischiensis_contig1:7595493..7595646Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7595494..7595646 -
1695739727.68669-UTR-S-ischiensis_contig1:7595493..75956461695739727.68669-UTR-S-ischiensis_contig1:7595493..7595646Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7595494..7595646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815483.7039747-CDS-S-ischiensis_contig1:7591665..75917681622815483.7039747-CDS-S-ischiensis_contig1:7591665..7591768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7591666..7591768 -
1695739727.6179328-CDS-S-ischiensis_contig1:7591665..75917681695739727.6179328-CDS-S-ischiensis_contig1:7591665..7591768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7591666..7591768 -
1622815483.717219-CDS-S-ischiensis_contig1:7592175..75924031622815483.717219-CDS-S-ischiensis_contig1:7592175..7592403Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7592176..7592403 -
1695739727.6294873-CDS-S-ischiensis_contig1:7592175..75924031695739727.6294873-CDS-S-ischiensis_contig1:7592175..7592403Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7592176..7592403 -
1622815483.72717-CDS-S-ischiensis_contig1:7593019..75930811622815483.72717-CDS-S-ischiensis_contig1:7593019..7593081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7593020..7593081 -
1695739727.6426268-CDS-S-ischiensis_contig1:7593019..75930811695739727.6426268-CDS-S-ischiensis_contig1:7593019..7593081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7593020..7593081 -
1622815483.736628-CDS-S-ischiensis_contig1:7594033..75942221622815483.736628-CDS-S-ischiensis_contig1:7594033..7594222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7594034..7594222 -
1695739727.656599-CDS-S-ischiensis_contig1:7594033..75942221695739727.656599-CDS-S-ischiensis_contig1:7594033..7594222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7594034..7594222 -
1622815483.7474718-CDS-S-ischiensis_contig1:7595238..75954931622815483.7474718-CDS-S-ischiensis_contig1:7595238..7595493Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7595239..7595493 -
1695739727.6749485-CDS-S-ischiensis_contig1:7595238..75954931695739727.6749485-CDS-S-ischiensis_contig1:7595238..7595493Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7595239..7595493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1117.1prot_S-ischiensis_contig1.1117.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7591666..7595493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1117.1

>prot_S-ischiensis_contig1.1117.1 ID=prot_S-ischiensis_contig1.1117.1|Name=mRNA_S-ischiensis_contig1.1117.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=279bp
MGLSTKHAASPPGPMLSRGVKSRRARTHTPRAQGLTPSWELCCGPDEDYK
RSMQQVLDHNFGGPSDDGNGLELYFAVAERGPGGKVRDVDLVPNGASMRV
TDRNKRLFVEAAARRRVTGGAEAEMAAMRSGLMDVIPGHTLAVLLPKELE
AVVSGPQNLDLSQLKKNVWYVDQGFDESHAVIRWFWQWAEEDLEEEGRRR
LLLFWSGSSRTPAFGFDDDTLNEDQRWAIARLQRKADSCPEVTTCDRRLY
LPAYPSLEALRKYMAMSINYGNVGYTRR*
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mRNA from alignment at S-ischiensis_contig1:7589976..7595646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1117.1 ID=mRNA_S-ischiensis_contig1.1117.1|Name=mRNA_S-ischiensis_contig1.1117.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5671bp|location=Sequence derived from alignment at S-ischiensis_contig1:7589976..7595646- (Schizocladia ischiensis KU_0333)
GTCATGGGTACCGGGCGTCCACGGAGCACTAAGTAGCGTAGAAGTTTGTT
TTGCGGTTCCAAGTGCCTCTCTGGGTAGAGTAGGAGTTTGTTTTGCAGTT
CCAAGTGCCTCTCTGTGCCTCGTGACTTGTCTGTCGGCAAGCGACACGCG
CCCATGGGCCTCTCAACGAAACATGCTGCCTCGCCCCCTGGGCCCATGCT
TTCCCGCGGGGTAAAATCACGGCGCGCACGCACACACACACCACGCGCTC
AGGGCTTAACGCCTTCCTGGGAGCTCTGCTGCGGGCCCGACGAGGACTAC
AAGCGCTCCATGCAACAGGTTCTGGACCACAATTTTGGGGGGCCGTCCGA
CGACGGCAACGGCCTGGAGCTGTACTTTGCCGTGGCAGAGAGGGGCCCCG
GGGGCAAGGTGCGTTGGCTCCTTCTCTACGAGTTAACCTATGTAACCATC
ATGAGTTGCCGGTGGCGTGCTTGGCAATGCCCTTGTTTGGAAGGCCACCT
TGCGTGAAGTGCCAGCAGAGTGCAGTAGTACGGAAGTACTGTGCAGTACA
TACCAGTAGTACCGCACAGGAATGCAGCACCGTACTGAATGGAGGGTTGT
GTTGGTCGTATTCCCCCCCCCCGGGCTGGTGTTCACGGAAAACGGGCATT
AAACCACAGATTTTGCCAGAGTAGGTGTTGGCTTTGGGCTGTCGACTATG
CACGAACGGCTATGTCGAATAACAAGTCAATGAGTACTACGAGTACTCTA
CTCCAGTACATGTAGTGACTGAACTGAGTAACTTTGGGGGGGCGGCTTTA
CGTTCGCAAGGTTGACAAATCCAGTGGGAATGTCGGCGACAAAAGGACCA
TCAGCCATGTCGATGCCGAGTCCTGATGGACTTGGGTTGTGCATACACAC
CGCGTATGGTACATGGCCTCGGGACTAGGGAGTACGTGTGTACGGCAAGC
ACAAGGTGAGTACATACGTACACTCCGGGCCGTTGCCAACGGTGGATGCG
GCTGTTCCTGTCCTTTCCGACCTTGGCTTGGCGTGCTTTCTGCATTCTTC
CAAGTACTTGCAAGTACGTCCCGGGCGGGTCCGACGCATGCGTGAACACT
GCGGTACGTTGCTGCTGTAGTGTACACTTTGCACGCTCCACCAACGACTT
GCGATGTCACTGCACGTCCCGTGGCTTCTAAGGTTGCCCTTCATCACAAG
AAGTACAGTACTGTACAAGTAGTAAGTACTTCGAAGTACTCGAGTACAAT
GGGCAGTAGACCGCAACACTATTGTACTGGCAAGTATGCTGTAACCTCCC
AGCTGTCAGCGGCCATTGACACCCTGGACCACCACCACCACCACCACCAC
CACCCAGCCATCACCCACCACCACCACGGGCACCAAACCCCCCACCGCCA
CCCGCCACGACTACTGCAACGCAGGTCCGGGACGTGGACCTGGTCCCGAA
CGGCGCGTCCATGCGCGTAACGGACCGCAACAAGCGCCTCTTTGTGGAGG
CGGCAGCACGGCGGCGGGTGACTGGTGGGGCGGAGGCGGAGATGGCGGCC
ATGCGCTCGGGGCTCATGGATGTCATCCCCGGGCACACCCTGGCCGTTTT
GCTGCCCAAGGAGGTGAGCGCGTAGAGGGCGTGGTGGAGGTGGTGGTGGT
GGTGGTGGTGGTGATGTTCGTGGCGGTGCGGCGGTGGTAGTTCGTGGTTG
TTGTGTTGGTGGTCGGTTTTGCGTCAGGTGCTTGCAAGCTTGGTATGGTT
GCAGCATGGCCATGAACTTTCAAAGCATCTCAAGACACCCGCTTCTCTAC
GTTTTGGCGGGAAGCGACATGAAGGTATTGTATGTCTTCGCTGGGTATTT
TGCGACTGCAGCAGCTGTACTCATACGTGTCGGTGACCTCTGTCCGTGTG
TACGCAATGGCAATACTTATGTGAGGCGAGTTTGACGGATGCTTTGACGG
GGACGTCCCCTATCGCGACGAAGAATCCCCAGCGATAGCACAGTATCCCC
AGATCATGAACCCGAGACTAAACCTCCCAATGTCCGCCATGTACTATTAA
GTTACTCGAGGACGAACAAGCGAGGTGCGGTCCACGTCAAAGGACTTCTC
CAAGTTCATACTGTAGAACCATGTAGTATGAGTACAGTACTTGTGAGCTA
CTTGGGAGTACATTGTACTGGTTGAGGTTGGGATATACTTGGAAGTATAC
AGTACTGTAGTACAGTACAGTAGTCCGCCAACGGCCCGTGGTCAATTGTC
TCAGATACAGTGTGGGATGGCTGTGTAGCCGTCGCCCTCTACTCTACAGG
TATCAAGTCCTGCTCCTATAGCCGTGCGTTTGTCGTCAAGCCATCCCCAC
GCGGCTCCCTTTGCCGTCCGTCCATCCGCTTGTCTGTCCGTCTTTGCCTG
TCTGCCCAACCATCCATCCGTCCATCCATACCATCAATCCATGCATCCAT
CCAATACATCTTCTCGTCCTATCAGCCATCCGTACGTGCTGTGTGTCTGT
CTGTCTGACTGACCATTCACCCGTCCGCTTGTCCGTCTGTCCGCTGGTCC
GCTGGGAGTGCGTAGCTGGAGGCCGTGGTGTCGGGGCCGCAGAATCTGGA
CCTGTCCCAGCTGAAGAAGAACGTTTGGTGAGGGACGGCTTCTTATTACT
TCCAAGTATTATTAGCCCTTGGCAGACGACGGTACACTGCAGTACATGTA
TGTAGACGATACGAGTTACCTTGTCGTGAGGAGTGACAGTGTTGTGCCAC
CGTCCTTTAGCTGTACGGGTTCACAGGGCCCTGTACATGGCACAAGAATC
TCGCGTTGTCCCCCCGTCTCTCTCTCTCTCCCTCTCCCCTCTCTCCCTCC
GTCCCTCCCTCTCTTTTCACCCCCCTTCTCTCTCCCTCCCTCCGCCCTCC
CCGCCCTCCCTCTCCCTCTCTTTCCCTCTCCCTCCTTCCCTCACCCGTAG
GATCACCCCTGCGAGATGCGTGGTCAGTGGTCAAATGGCTACGGCAGGCA
ACTCATGAGTACACCTCCTCCCTCCCTCACCCTGTCTCATGGTGTTTAGC
AAAGAGACTGGCGAACCCTAGCAATCCCCCCGACGATAGCAACAACGACA
GCAACAGGGGATACACTGCCCTGCGCCACCCATCTCACGCCCACGAACGA
ACGCAACTCAAGAGCACCCCCCCCCCCCCAACCCCCTTCCCCCGCACGCC
CCTTCCCTCCTCCTCCGCATCTCCCCCCCTCCGGCCGCGGCAGGTACGTG
GACCAGGGCTTTGACGAGTCCCACGCCGTGATCCGATGGTTCTGGCAGTG
GGCTGAGGAGGACCTGGAGGAGGAGGGCCGGCGCCGCCTGCTGCTCTTCT
GGTCGGGGAGCAGCCGCACCCCGGCCTTTGGCTTTGACGACGACACGCTG
AACGAGGACCAGCGCTGGGCCATCGCCCGCCTACAGCGCAAGGCGGACTC
GTGCCCGGAGGTGACCACATGGTGAGTGAGTGAGCCCATGCCGGTGGGGC
AGCACCGTGTTGTTATGTTGCTATTACTTCGTGTTTGTTTTCCCCATGGT
TTTTGCGCAGCGCTTGCAGCACGGCACTGTGCCTCTGCCCCCACCCACCC
CCCACCCACCCCCGGCTTTGCACGTGAAGGAAGGCCATTGCCGCTGTCGA
GGCCGTTTGTGATGTGATGCACGCCTACTATAGCTTGTTGTGTTCATTTC
TTCGTAGTATATCTTGCCGTTCACCCCATCGGGACGTGGTCTTCACACCT
CGCTCGGTTTCCCACCGTTCCACCACGCTCACCAACGCTAACGTCCCCGA
CCCCCACCTCCACCGCACCGCCGCCGCCACCGGCCGCCGCCGACGCCGTT
CCCGCCCCAATCACTGCCATCTCCGCAGTGACCGGCGGTTGTACCTCCCG
GCCTACCCAAGCCTGGAGGCCCTCCGAAAATACATGGCAATGTCCATCAA
CTACGGCAACGTCGGCTACACCAGGCGCTGAGGGGGAGACTCCGAACGAC
TCGAGTACAGCTTCAGCCAGCTAGACATGATTGCAGTACTGCACGGCTGC
CGCACCAAAGATCACAAGCTCCATGCCGGGTCATGCATGTGTGGAGCATG
CGGGCCCCACAGCACGGCATTGGGCACCTTTTTCTTCTGCAGTATGTACT
TCGAAGTACTACTACTGTTGTACTTTCAAGTAGTACGAGTAGTCTACTAC
AGTACTACGGCACTATACTAGAACTTTTTAGTGCACTGTAGTGCTTTGAA
GTACTCGAAGAATGCACCTCAAACACAAAGACGTACTGTAGTTTTGCGGT
GCGGTGGTGTAGTTTGGCCATACATGTCGGGTGATCATCAAGCATGTACT
TCAGAAGTACCTACAGTACACACAAGGTACCGGTACTACGTGCCCCGAGG
TGAGCCTGAGGGAAGCACGGGGGAAAATCCTGTTCTCCCGCACACGGCAC
TCGGTCCCTTGGCCCGCCGCCACGCCCCGCGCCCTAATCTTTCGTGATGT
GTTGTCATGTAATGTGATGTGATGTCAACCTCCAGTACATGAGCGTGCGC
ATCACATCGCGTTGCATGGAAAATGATGGTGCACTCATCCCTCCCTGTAC
TTTGCTGTACTGTCATCCTCCTCGGGTTACCTACATCGTCTTTCTGGCAT
TGCCCTGGATCCACACTTGGTGAACGGGGGGCGGCCCTGGCAGGGGTTCC
TGACCAGAACGTGTCGGCCAGCGTCCGTATGGCGACCGAACTGCCATCCA
CTGCCCTCGGATGTCTGCACAGGCCTGACGTGGCCGGCGGCCGCATGTGC
GGCGGATCCCCGACTGCCCATGCACACCCATGGCAGTGTGTGCCGTGTGT
CGAGCACCGCCTCAGTGCACCGCCCTGTCGTGGAACTAGGTATAACGACT
GCGACTTGGGCGCCGCATGCTACAGTAGCATAGAGTAGACAAGATTCCAA
AGTACTCGAGTACAGCACTTGGCTGCTGCGACTGTACCTACTCTGGGTGC
TGTGGCTCTGTTGTGTGTGCGTTTCAGGGCTTCAAGCTGGAGGTCCACCT
TGCAGGCGGCACATCCCCTGGGTGCGTGCTCGCAATGGCCCCTACACACC
CACACGCCACGGCAGAGGGCACCTGTCGTGAACAAGAGCGCGTAGCGTAA
GTTGTGGGGGCGCTCCACTGGCAGGGGCATGCGTGTCCATGTATACGTTG
CGGTTGATCCGCCGTGACCGTCACGCATGGACGGACGGACGGACGGACGC
AACCACGGGGCGCTCCGTGCCACATGGCCGTAGTCGAACTGTTCAAGTTA
CGGTCATGTGTACACTACTAGACTACATTACATGGACGTGCCAGTCACCG
TGAAGCTCAGGCTGGGCCCACTGTTGCGCTGGGCACGCTCCACATGGGTG
CATCGGGGCCCGGGGTCTGCTGTGTGGGGGACGGGGTTCATGTTGGAGCT
CTCGGGGTTTACACTTGCAACATAGTACAATCGTCTTCTGCGTGAGTGCG
GTGTACTGTACGGTAGTGCTTCCTTCCAAGTGCAGTACTTGTGCAGTGTA
GAACGTACATTCCAAGCACTGGAGTGTATGTACTCACACCTCCCCGTGCT
TGCCGTAGTCCCGAGGCCATTGACCCCGCGCCTTGACCTAGACGGAGCAG
GCCCCATCCCCACCCTGGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7589976..7595646-

>mRNA_S-ischiensis_contig1.1117.1 ID=mRNA_S-ischiensis_contig1.1117.1|Name=mRNA_S-ischiensis_contig1.1117.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1674bp|location=Sequence derived from alignment at S-ischiensis_contig1:7589976..7595646- (Schizocladia ischiensis KU_0333)
ATGGGCCTCTCAACGAAACATGCTGCCTCGCCCCCTGGGCCCATGCTTTC
CCGCGGGGTAAAATCACGGCGCGCACGCACACACACACCACGCGCTCAGG
GCTTAACGCCTTCCTGGGAGCTCTGCTGCGGGCCCGACGAGGACTACAAG
CGCTCCATGCAACAGGTTCTGGACCACAATTTTGGGGGGCCGTCCGACGA
CGGCAACGGCCTGGAGCTGTACTTTGCCGTGGCAGAGAGGGGCCCCGGGG
GCAAGATGGGCCTCTCAACGAAACATGCTGCCTCGCCCCCTGGGCCCATG
CTTTCCCGCGGGGTAAAATCACGGCGCGCACGCACACACACACCACGCGC
TCAGGGCTTAACGCCTTCCTGGGAGCTCTGCTGCGGGCCCGACGAGGACT
ACAAGCGCTCCATGCAACAGGTTCTGGACCACAATTTTGGGGGGCCGTCC
GACGACGGCAACGGCCTGGAGCTGTACTTTGCCGTGGCAGAGAGGGGCCC
CGGGGGCAAGGTCCGGGACGTGGACCTGGTCCCGAACGGCGCGTCCATGC
GCGTAACGGACCGCAACAAGCGCCTCTTTGTGGAGGCGGCAGCACGGCGG
CGGGTGACTGGTGGGGCGGAGGCGGAGATGGCGGCCATGCGCTCGGGGCT
CATGGATGTCATCCCCGGGCACACCCTGGCCGTTTTGCTGCCCAAGGAGG
TCCGGGACGTGGACCTGGTCCCGAACGGCGCGTCCATGCGCGTAACGGAC
CGCAACAAGCGCCTCTTTGTGGAGGCGGCAGCACGGCGGCGGGTGACTGG
TGGGGCGGAGGCGGAGATGGCGGCCATGCGCTCGGGGCTCATGGATGTCA
TCCCCGGGCACACCCTGGCCGTTTTGCTGCCCAAGGAGCTGGAGGCCGTG
GTGTCGGGGCCGCAGAATCTGGACCTGTCCCAGCTGAAGAAGAACGTTTG
CTGGAGGCCGTGGTGTCGGGGCCGCAGAATCTGGACCTGTCCCAGCTGAA
GAAGAACGTTTGGTACGTGGACCAGGGCTTTGACGAGTCCCACGCCGTGA
TCCGATGGTTCTGGCAGTGGGCTGAGGAGGACCTGGAGGAGGAGGGCCGG
CGCCGCCTGCTGCTCTTCTGGTCGGGGAGCAGCCGCACCCCGGCCTTTGG
CTTTGACGACGACACGCTGAACGAGGACCAGCGCTGGGCCATCGCCCGCC
TACAGCGCAAGGCGGACTCGTGCCCGGAGGTGACCACATGGTACGTGGAC
CAGGGCTTTGACGAGTCCCACGCCGTGATCCGATGGTTCTGGCAGTGGGC
TGAGGAGGACCTGGAGGAGGAGGGCCGGCGCCGCCTGCTGCTCTTCTGGT
CGGGGAGCAGCCGCACCCCGGCCTTTGGCTTTGACGACGACACGCTGAAC
GAGGACCAGCGCTGGGCCATCGCCCGCCTACAGCGCAAGGCGGACTCGTG
CCCGGAGGTGACCACATGTGACCGGCGGTTGTACCTCCCGGCCTACCCAA
GCCTGGAGGCCCTCCGAAAATACATGGCAATGTCCATCAACTACGGCAAC
GTCGGCTACACCAGGCGCTGATGACCGGCGGTTGTACCTCCCGGCCTACC
CAAGCCTGGAGGCCCTCCGAAAATACATGGCAATGTCCATCAACTACGGC
AACGTCGGCTACACCAGGCGCTGA
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