mRNA_S-ischiensis_contig1.1112.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1112.1
Unique NamemRNA_S-ischiensis_contig1.1112.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1112.1 vs. uniprot
Match: A0A7S3UVM0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM0_HETAK)

HSP 1 Score: 142 bits (358), Expect = 5.960e-33
Identity = 80/132 (60.61%), Postives = 90/132 (68.18%), Query Frame = 1 
Query: 1303 DVRLTPRDRLQLPQLALAPPHLRRVRLALLQGFNRRLRRAIPYVDLGASLPWRAGPRLCRAAHWVFPGLKSALLEAALRATAWEGGPREGVSLDHGRKLRSVDREERDPSDSQCLFVQAFHQLHFRPPTALR 1698
            DV LT R++L L +LA  PP     R ALLQGFNRRLRRA+P VDL    PWR G RL RA H VF  LK+ LLE ALR TA  GG  + V LDH + L + DREER P+ SQC+FVQAF QLH RPP ALR
Sbjct:   13 DVVLTAREQLALQRLASRPPAALAARFALLQGFNRRLRRALPAVDLRTRTPWRLGARLRRAGHCVFHDLKARLLEEALRETAGAGGGGQ-VVLDHAKALLAKDREERAPATSQCIFVQAFQQLHDRPPEALR 143
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BLAST of mRNA_S-ischiensis_contig1.1112.1 vs. uniprot
Match: A0A7S2WTG5_9STRA (Hypothetical protein (Fragment) n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTG5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.730e-18
Identity = 67/153 (43.79%), Postives = 84/153 (54.90%), Query Frame = 1 
Query: 1303 DVRLTPRDRLQ--------LPQLALAPP-----------HLRRVRLALLQGFNRRLRRAIPYVDLGASLPWRAGPRLCRAAHWVFPGLKSALLEAALRATAWEGGPREGVSLDHGRKLRSVDREERDPSDSQCLFVQAFHQLHFRPPTALRRS 1704
            D++L PR+R+Q        +PQ    P            +L  VR A L+  N RLRRA+P+VDLG  L +RAG +L R  H +F  LK  LLE +LR TA   G    +SLDH +K  S D   RDPS+SQCLFVQAF Q        LR+S
Sbjct:  765 DLKLAPRERMQFQRLDPARIPQWQARPKDASVVSSGMWINLLHVRFAFLRALNERLRRALPFVDLGTGLEYRAGHKLRRLGHCIFNDLKMDLLEKSLRDTAHMSGSIP-LSLDHQKKTHSQDCGLRDPSNSQCLFVQAFQQCLRVKVAQLRQS 916
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UVM0_HETAK5.960e-3360.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTG5_9STRA2.730e-1843.79Hypothetical protein (Fragment) n=3 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7547817..7549843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog272952.HpaP805948
KEGG koko:K10595
KEGG Pathwayko04120,map04120
EggNOG free text desc.Domain Homologous to E6-AP Carboxyl Terminus with
EggNOG OGs3QF0G@4776,COG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1779
Cds size1779
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.131521-CDS-S-ischiensis_contig1:7547816..75478611622815360.131521-CDS-S-ischiensis_contig1:7547816..7547861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7547817..7547861 +
1695739659.4614575-CDS-S-ischiensis_contig1:7547816..75478611695739659.4614575-CDS-S-ischiensis_contig1:7547816..7547861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7547817..7547861 +
1622815360.1430137-CDS-S-ischiensis_contig1:7548109..75498431622815360.1430137-CDS-S-ischiensis_contig1:7548109..7549843Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7548110..7549843 +
1695739659.4730213-CDS-S-ischiensis_contig1:7548109..75498431695739659.4730213-CDS-S-ischiensis_contig1:7548109..7549843Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7548110..7549843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1112.1prot_S-ischiensis_contig1.1112.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7547817..7549843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1112.1

>prot_S-ischiensis_contig1.1112.1 ID=prot_S-ischiensis_contig1.1112.1|Name=mRNA_S-ischiensis_contig1.1112.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=593bp
CVWVAGAADRDQWLQVDLRELRLLTGVAVAATWPQSPPGPPVQHGHSAEG
GGDRDNNPANASDDTGMGGSGGGGGDGGPGPEPGPGPRFVCQFRLLVSDD
GERWAEAQGAGGAPLLLPGCFGPGHTVAHRLQAARPPKARVGGGVGPRPG
PGPGPGPGGPGLGEGAGLAARYVRVCPTRWSAHGIGLCLELFTAHRFEFS
GALETPEQWRRVMVIPGDRLRFSYAALASAAAPGGGLVAAGAATTPAAAA
SALRGFTFEVEAVGLPPEQKERWLQERASDVAKVSQAMELWDPRADEELA
EWLNSKGEGGDADGGAGGDDGGVAGDGGGRGGNRRRILRRSRPRADSLAD
NAAEPGDMEDFDEGDDESEEDEDDMLQETEFEEDREVALPSTGGDTHDGG
GSGVGADTSTEENNNNVGGGSGGGAEAHSLSTLLDVRLTPRDRLQLPQLA
LAPPHLRRVRLALLQGFNRRLRRAIPYVDLGASLPWRAGPRLCRAAHWVF
PGLKSALLEAALRATAWEGGPREGVSLDHGRKLRSVDREERDPSDSQCLF
VQAFHQLHFRPPTALRRSAGAAAGAGGGGGGGGGSKVFDVTFE
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mRNA from alignment at S-ischiensis_contig1:7547817..7549843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1112.1 ID=mRNA_S-ischiensis_contig1.1112.1|Name=mRNA_S-ischiensis_contig1.1112.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2027bp|location=Sequence derived from alignment at S-ischiensis_contig1:7547817..7549843+ (Schizocladia ischiensis KU_0333)
TGTGTGTGGGTGGCGGGCGCGGCCGACCGTGATCAGTGGCTGCAGGTGCG
TGCTGTGTCAGTGTCTGTATGTACTGTATGTGTGTGCGCATGTTGCAGAT
CGGCGAGGCCACAATGGCACCGGTGCGTGCCGCCAAGGCGATCTAGTGCA
GGACAAGAGGCATGAGGAGAACAGGCTGACGTGCGGGCACTGGTGACGGA
TCGGATAGTGTTTCACGTGCCCCACATTCACTCCCCCGCCCAACCCCTGT
TCCCCTTCTCCTGCCCCCCCCCATGACAAACGGGGGCCGGCAGGTTGACC
TCCGTGAGTTGCGCCTGCTCACCGGAGTGGCTGTGGCGGCGACCTGGCCT
CAGTCGCCGCCGGGGCCTCCTGTGCAGCATGGCCACAGTGCAGAGGGGGG
CGGCGATCGTGACAACAACCCGGCCAACGCAAGTGATGACACTGGCATGG
GTGGCAGCGGCGGTGGCGGCGGCGACGGCGGGCCAGGGCCAGAGCCAGGC
CCGGGCCCACGTTTCGTCTGCCAGTTCCGCCTGCTGGTGAGCGACGACGG
CGAGCGCTGGGCCGAGGCACAGGGTGCGGGTGGCGCACCACTGCTCCTCC
CGGGCTGCTTTGGGCCGGGGCACACCGTCGCTCACCGCCTCCAGGCCGCC
CGACCGCCCAAGGCGAGGGTAGGAGGGGGCGTGGGCCCGAGGCCGGGGCC
GGGGCCGGGGCCAGGCCCTGGTGGGCCAGGCCTGGGCGAGGGCGCGGGTC
TGGCGGCCCGGTACGTGCGTGTGTGCCCCACCCGGTGGTCCGCACACGGC
ATTGGCCTGTGCCTTGAGCTGTTCACGGCGCACCGCTTCGAGTTCTCGGG
CGCCTTGGAGACGCCGGAGCAGTGGAGGAGGGTGATGGTCATCCCGGGGG
ACCGACTCCGCTTCTCGTATGCCGCGCTGGCGTCAGCGGCGGCCCCAGGG
GGGGGACTCGTTGCTGCCGGCGCCGCCACCACCCCCGCCGCCGCCGCTTC
CGCCTTGCGGGGGTTCACATTTGAGGTTGAGGCGGTGGGGCTGCCGCCAG
AGCAGAAGGAGCGCTGGCTTCAAGAGCGGGCCTCGGACGTGGCCAAGGTG
TCCCAGGCTATGGAGCTGTGGGACCCTCGGGCAGATGAAGAGCTGGCCGA
GTGGCTCAACAGCAAGGGTGAGGGCGGCGACGCTGATGGTGGGGCTGGGG
GCGACGATGGCGGTGTTGCTGGTGATGGCGGCGGGCGGGGTGGCAACCGC
CGCCGCATCCTTCGCCGATCCCGTCCCCGGGCTGACTCCCTAGCTGACAA
CGCGGCCGAGCCCGGTGACATGGAGGACTTTGACGAGGGCGATGACGAGA
GCGAAGAAGATGAAGATGATATGCTTCAGGAGACGGAGTTTGAAGAAGAC
CGGGAGGTTGCCCTGCCCAGCACGGGTGGTGACACCCACGACGGCGGTGG
CAGCGGCGTTGGAGCTGACACCAGCACCGAAGAAAACAACAACAACGTCG
GTGGCGGCAGTGGTGGCGGGGCGGAAGCCCACTCGCTGTCAACCCTGCTG
GACGTCCGGCTGACCCCCCGCGACCGCCTGCAGCTTCCGCAGCTGGCCCT
TGCGCCGCCCCACCTGCGTCGCGTGCGCCTGGCCCTCCTCCAAGGTTTTA
ACCGGCGGCTGCGGCGGGCCATCCCGTACGTAGACCTCGGGGCCTCCCTC
CCCTGGCGAGCGGGACCGCGGCTGTGTCGCGCCGCCCACTGGGTCTTCCC
GGGCCTCAAGTCCGCCCTGCTGGAGGCAGCACTACGGGCGACCGCGTGGG
AGGGCGGCCCGCGCGAGGGGGTGAGCCTGGACCATGGGCGCAAGCTGCGG
TCGGTGGACCGCGAGGAGCGGGACCCGTCCGACAGCCAGTGCCTCTTTGT
GCAGGCCTTCCATCAGCTGCACTTCAGGCCGCCCACGGCGCTGCGCCGGA
GTGCGGGGGCAGCCGCGGGGGCGGGGGGCGGCGGCGGCGGCGGAGGCGGG
AGCAAGGTATTTGACGTCACGTTTGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7547817..7549843+

>mRNA_S-ischiensis_contig1.1112.1 ID=mRNA_S-ischiensis_contig1.1112.1|Name=mRNA_S-ischiensis_contig1.1112.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3558bp|location=Sequence derived from alignment at S-ischiensis_contig1:7547817..7549843+ (Schizocladia ischiensis KU_0333)
TGTGTGTGGGTGGCGGGCGCGGCCGACCGTGATCAGTGGCTGCAGTGTGT
GTGGGTGGCGGGCGCGGCCGACCGTGATCAGTGGCTGCAGGTTGACCTCC
GTGAGTTGCGCCTGCTCACCGGAGTGGCTGTGGCGGCGACCTGGCCTCAG
TCGCCGCCGGGGCCTCCTGTGCAGCATGGCCACAGTGCAGAGGGGGGCGG
CGATCGTGACAACAACCCGGCCAACGCAAGTGATGACACTGGCATGGGTG
GCAGCGGCGGTGGCGGCGGCGACGGCGGGCCAGGGCCAGAGCCAGGCCCG
GGCCCACGTTTCGTCTGCCAGTTCCGCCTGCTGGTGAGCGACGACGGCGA
GCGCTGGGCCGAGGCACAGGGTGCGGGTGGCGCACCACTGCTCCTCCCGG
GCTGCTTTGGGCCGGGGCACACCGTCGCTCACCGCCTCCAGGCCGCCCGA
CCGCCCAAGGCGAGGGTAGGAGGGGGCGTGGGCCCGAGGCCGGGGCCGGG
GCCGGGGCCAGGCCCTGGTGGGCCAGGCCTGGGCGAGGGCGCGGGTCTGG
CGGCCCGGTACGTGCGTGTGTGCCCCACCCGGTGGTCCGCACACGGCATT
GGCCTGTGCCTTGAGCTGTTCACGGCGCACCGCTTCGAGTTCTCGGGCGC
CTTGGAGACGCCGGAGCAGTGGAGGAGGGTGATGGTCATCCCGGGGGACC
GACTCCGCTTCTCGTATGCCGCGCTGGCGTCAGCGGCGGCCCCAGGGGGG
GGACTCGTTGCTGCCGGCGCCGCCACCACCCCCGCCGCCGCCGCTTCCGC
CTTGCGGGGGTTCACATTTGAGGTTGAGGCGGTGGGGCTGCCGCCAGAGC
AGAAGGAGCGCTGGCTTCAAGAGCGGGCCTCGGACGTGGCCAAGGTGTCC
CAGGCTATGGAGCTGTGGGACCCTCGGGCAGATGAAGAGCTGGCCGAGTG
GCTCAACAGCAAGGGTGAGGGCGGCGACGCTGATGGTGGGGCTGGGGGCG
ACGATGGCGGTGTTGCTGGTGATGGCGGCGGGCGGGGTGGCAACCGCCGC
CGCATCCTTCGCCGATCCCGTCCCCGGGCTGACTCCCTAGCTGACAACGC
GGCCGAGCCCGGTGACATGGAGGACTTTGACGAGGGCGATGACGAGAGCG
AAGAAGATGAAGATGATATGCTTCAGGAGACGGAGTTTGAAGAAGACCGG
GAGGTTGCCCTGCCCAGCACGGGTGGTGACACCCACGACGGCGGTGGCAG
CGGCGTTGGAGCTGACACCAGCACCGAAGAAAACAACAACAACGTCGGTG
GCGGCAGTGGTGGCGGGGCGGAAGCCCACTCGCTGTCAACCCTGCTGGAC
GTCCGGCTGACCCCCCGCGACCGCCTGCAGCTTCCGCAGCTGGCCCTTGC
GCCGCCCCACCTGCGTCGCGTGCGCCTGGCCCTCCTCCAAGGTTTTAACC
GGCGGCTGCGGCGGGCCATCCCGTACGTAGACCTCGGGGCCTCCCTCCCC
TGGCGAGCGGGACCGCGGCTGTGTCGCGCCGCCCACTGGGTCTTCCCGGG
CCTCAAGTCCGCCCTGCTGGAGGCAGCACTACGGGCGACCGCGTGGGAGG
GCGGCCCGCGCGAGGGGGTGAGCCTGGACCATGGGCGCAAGCTGCGGTCG
GTGGACCGCGAGGAGCGGGACCCGTCCGACAGCCAGTGCCTCTTTGTGCA
GGCCTTCCATCAGCTGCACTTCAGGCCGCCCACGGCGCTGCGCCGGAGTG
CGGGGGCAGCCGCGGGGGCGGGGGGCGGCGGCGGCGGCGGAGGCGGGAGC
AAGGTATTTGACGTCACGTTTGAGGTTGACCTCCGTGAGTTGCGCCTGCT
CACCGGAGTGGCTGTGGCGGCGACCTGGCCTCAGTCGCCGCCGGGGCCTC
CTGTGCAGCATGGCCACAGTGCAGAGGGGGGCGGCGATCGTGACAACAAC
CCGGCCAACGCAAGTGATGACACTGGCATGGGTGGCAGCGGCGGTGGCGG
CGGCGACGGCGGGCCAGGGCCAGAGCCAGGCCCGGGCCCACGTTTCGTCT
GCCAGTTCCGCCTGCTGGTGAGCGACGACGGCGAGCGCTGGGCCGAGGCA
CAGGGTGCGGGTGGCGCACCACTGCTCCTCCCGGGCTGCTTTGGGCCGGG
GCACACCGTCGCTCACCGCCTCCAGGCCGCCCGACCGCCCAAGGCGAGGG
TAGGAGGGGGCGTGGGCCCGAGGCCGGGGCCGGGGCCGGGGCCAGGCCCT
GGTGGGCCAGGCCTGGGCGAGGGCGCGGGTCTGGCGGCCCGGTACGTGCG
TGTGTGCCCCACCCGGTGGTCCGCACACGGCATTGGCCTGTGCCTTGAGC
TGTTCACGGCGCACCGCTTCGAGTTCTCGGGCGCCTTGGAGACGCCGGAG
CAGTGGAGGAGGGTGATGGTCATCCCGGGGGACCGACTCCGCTTCTCGTA
TGCCGCGCTGGCGTCAGCGGCGGCCCCAGGGGGGGGACTCGTTGCTGCCG
GCGCCGCCACCACCCCCGCCGCCGCCGCTTCCGCCTTGCGGGGGTTCACA
TTTGAGGTTGAGGCGGTGGGGCTGCCGCCAGAGCAGAAGGAGCGCTGGCT
TCAAGAGCGGGCCTCGGACGTGGCCAAGGTGTCCCAGGCTATGGAGCTGT
GGGACCCTCGGGCAGATGAAGAGCTGGCCGAGTGGCTCAACAGCAAGGGT
GAGGGCGGCGACGCTGATGGTGGGGCTGGGGGCGACGATGGCGGTGTTGC
TGGTGATGGCGGCGGGCGGGGTGGCAACCGCCGCCGCATCCTTCGCCGAT
CCCGTCCCCGGGCTGACTCCCTAGCTGACAACGCGGCCGAGCCCGGTGAC
ATGGAGGACTTTGACGAGGGCGATGACGAGAGCGAAGAAGATGAAGATGA
TATGCTTCAGGAGACGGAGTTTGAAGAAGACCGGGAGGTTGCCCTGCCCA
GCACGGGTGGTGACACCCACGACGGCGGTGGCAGCGGCGTTGGAGCTGAC
ACCAGCACCGAAGAAAACAACAACAACGTCGGTGGCGGCAGTGGTGGCGG
GGCGGAAGCCCACTCGCTGTCAACCCTGCTGGACGTCCGGCTGACCCCCC
GCGACCGCCTGCAGCTTCCGCAGCTGGCCCTTGCGCCGCCCCACCTGCGT
CGCGTGCGCCTGGCCCTCCTCCAAGGTTTTAACCGGCGGCTGCGGCGGGC
CATCCCGTACGTAGACCTCGGGGCCTCCCTCCCCTGGCGAGCGGGACCGC
GGCTGTGTCGCGCCGCCCACTGGGTCTTCCCGGGCCTCAAGTCCGCCCTG
CTGGAGGCAGCACTACGGGCGACCGCGTGGGAGGGCGGCCCGCGCGAGGG
GGTGAGCCTGGACCATGGGCGCAAGCTGCGGTCGGTGGACCGCGAGGAGC
GGGACCCGTCCGACAGCCAGTGCCTCTTTGTGCAGGCCTTCCATCAGCTG
CACTTCAGGCCGCCCACGGCGCTGCGCCGGAGTGCGGGGGCAGCCGCGGG
GGCGGGGGGCGGCGGCGGCGGCGGAGGCGGGAGCAAGGTATTTGACGTCA
CGTTTGAG
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