mRNA_S-ischiensis_contig1.1096.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1096.1
Unique NamemRNA_S-ischiensis_contig1.1096.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7518456..7518793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog112098.XP_008615989.1
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815483.254954-CDS-S-ischiensis_contig1:7518455..75187911622815483.254954-CDS-S-ischiensis_contig1:7518455..7518791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7518456..7518791 +
1695739727.3238955-CDS-S-ischiensis_contig1:7518455..75187911695739727.3238955-CDS-S-ischiensis_contig1:7518455..7518791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7518456..7518791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1096.1prot_S-ischiensis_contig1.1096.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7518456..7518791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1096.1

>prot_S-ischiensis_contig1.1096.1 ID=prot_S-ischiensis_contig1.1096.1|Name=mRNA_S-ischiensis_contig1.1096.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
AARAKAGRGGAMRKPEGLLAAQRRLCKACLLYVTDGFATPPAVLARLSRV
RTQRARQRALGLRCIHQLLGSVQTPSARQDCLVFLRPALRGLRGGRGPGG
RAEDDSGRTSAA
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mRNA from alignment at S-ischiensis_contig1:7518456..7518793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1096.1 ID=mRNA_S-ischiensis_contig1.1096.1|Name=mRNA_S-ischiensis_contig1.1096.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=338bp|location=Sequence derived from alignment at S-ischiensis_contig1:7518456..7518793+ (Schizocladia ischiensis KU_0333)
GCGGCGAGGGCGAAGGCTGGGCGTGGTGGGGCTATGAGGAAGCCGGAAGG
GCTTTTGGCGGCGCAGCGGCGTCTGTGCAAGGCGTGCCTGCTGTACGTCA
CGGACGGGTTTGCCACGCCACCAGCGGTCCTGGCGAGGCTCAGCCGGGTG
AGGACGCAGAGGGCACGGCAGCGGGCCCTGGGCCTTCGCTGCATTCACCA
GCTGCTGGGAAGCGTACAGACACCATCGGCCAGGCAGGACTGCTTGGTCT
TCCTCCGTCCGGCCCTACGGGGGCTCAGAGGGGGTCGTGGGCCGGGTGGC
AGGGCGGAGGACGATTCAGGCAGGACCTCGGCGGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7518456..7518793+

>mRNA_S-ischiensis_contig1.1096.1 ID=mRNA_S-ischiensis_contig1.1096.1|Name=mRNA_S-ischiensis_contig1.1096.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig1:7518456..7518793+ (Schizocladia ischiensis KU_0333)
GCGGCGAGGGCGAAGGCTGGGCGTGGTGGGGCTATGAGGAAGCCGGAAGG
GCTTTTGGCGGCGCAGCGGCGTCTGTGCAAGGCGTGCCTGCTGTACGTCA
CGGACGGGTTTGCCACGCCACCAGCGGTCCTGGCGAGGCTCAGCCGGGTG
AGGACGCAGAGGGCACGGCAGCGGGCCCTGGGCCTTCGCTGCATTCACCA
GCTGCTGGGAAGCGTACAGACACCATCGGCCAGGCAGGACTGCTTGGTCT
TCCTCCGTCCGGCCCTACGGGGGCTCAGAGGGGGTCGTGGGCCGGGTGGC
AGGGCGGAGGACGATTCAGGCAGGACCTCGGCGGCGGCGGCGAGGGCGAA
GGCTGGGCGTGGTGGGGCTATGAGGAAGCCGGAAGGGCTTTTGGCGGCGC
AGCGGCGTCTGTGCAAGGCGTGCCTGCTGTACGTCACGGACGGGTTTGCC
ACGCCACCAGCGGTCCTGGCGAGGCTCAGCCGGGTGAGGACGCAGAGGGC
ACGGCAGCGGGCCCTGGGCCTTCGCTGCATTCACCAGCTGCTGGGAAGCG
TACAGACACCATCGGCCAGGCAGGACTGCTTGGTCTTCCTCCGTCCGGCC
CTACGGGGGCTCAGAGGGGGTCGTGGGCCGGGTGGCAGGGCGGAGGACGA
TTCAGGCAGGACCTCGGCGGCG
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