mRNA_S-ischiensis_contig1.1095.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1095.1
Unique NamemRNA_S-ischiensis_contig1.1095.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7517698..7518415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size717
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.2719839-UTR-S-ischiensis_contig1:7517697..75176981622815376.2719839-UTR-S-ischiensis_contig1:7517697..7517698Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7517698..7517698 +
1695739665.630784-UTR-S-ischiensis_contig1:7517697..75176981695739665.630784-UTR-S-ischiensis_contig1:7517697..7517698Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7517698..7517698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.2861404-CDS-S-ischiensis_contig1:7517698..75184151622815376.2861404-CDS-S-ischiensis_contig1:7517698..7518415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7517699..7518415 +
1695739665.6401806-CDS-S-ischiensis_contig1:7517698..75184151695739665.6401806-CDS-S-ischiensis_contig1:7517698..7518415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7517699..7518415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1095.1prot_S-ischiensis_contig1.1095.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7517699..7518415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1095.1

>prot_S-ischiensis_contig1.1095.1 ID=prot_S-ischiensis_contig1.1095.1|Name=mRNA_S-ischiensis_contig1.1095.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=239bp
MRGAETVEGAEVLSAAAVALVTWLEAAPVASPAPGAWAGGLQRVGPMGGG
RAAASRCEAMFFAALVHHCGLGPAAEAAGRAAAAAAAAKGQEQEKGPAAG
RFRSDPAPSALASTAVAAAASAAAGEHGGARLHELWLRVGELRRWLLRNK
HALAATGPVLGPGSPGAPAGSTGGPGSPSPASEPGLGPSSGLGPAAAMAA
PPRTFSQLLGQAEERAHFLLGLEPAWGAQGEGDGGDREE
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mRNA from alignment at S-ischiensis_contig1:7517698..7518415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1095.1 ID=mRNA_S-ischiensis_contig1.1095.1|Name=mRNA_S-ischiensis_contig1.1095.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=718bp|location=Sequence derived from alignment at S-ischiensis_contig1:7517698..7518415+ (Schizocladia ischiensis KU_0333)
CATGAGGGGAGCGGAGACAGTGGAGGGAGCTGAGGTGCTCTCTGCGGCTG
CCGTTGCGCTCGTGACGTGGCTCGAGGCGGCGCCCGTGGCATCGCCGGCC
CCAGGGGCCTGGGCTGGCGGCCTGCAGAGGGTCGGGCCGATGGGCGGCGG
ACGGGCCGCGGCGAGCAGATGCGAGGCCATGTTCTTCGCAGCCCTGGTGC
ACCACTGCGGCCTGGGCCCCGCTGCAGAGGCGGCGGGCAGGGCGGCGGCA
GCCGCTGCGGCAGCGAAGGGGCAGGAGCAGGAGAAGGGCCCTGCAGCTGG
AAGGTTTCGTTCCGACCCCGCCCCTTCCGCGCTTGCATCTACCGCTGTCG
CCGCCGCTGCCAGCGCCGCCGCCGGAGAGCATGGGGGGGCGCGGCTCCAT
GAGCTCTGGCTGCGCGTGGGTGAGCTGCGTAGGTGGCTGCTGCGCAACAA
GCACGCCCTGGCCGCCACCGGCCCTGTGTTGGGCCCGGGGAGCCCCGGCG
CTCCTGCGGGGTCGACCGGCGGCCCCGGATCACCGTCGCCTGCCAGTGAG
CCAGGATTGGGCCCGAGCTCGGGCCTGGGCCCGGCAGCAGCGATGGCAGC
CCCGCCGCGGACCTTCAGCCAGCTCCTCGGCCAGGCGGAGGAGCGGGCAC
ATTTCCTCCTCGGGCTGGAGCCGGCCTGGGGGGCGCAGGGTGAAGGTGAC
GGCGGCGACAGGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7517698..7518415+

>mRNA_S-ischiensis_contig1.1095.1 ID=mRNA_S-ischiensis_contig1.1095.1|Name=mRNA_S-ischiensis_contig1.1095.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1434bp|location=Sequence derived from alignment at S-ischiensis_contig1:7517698..7518415+ (Schizocladia ischiensis KU_0333)
ATGAGGGGAGCGGAGACAGTGGAGGGAGCTGAGGTGCTCTCTGCGGCTGC
CGTTGCGCTCGTGACGTGGCTCGAGGCGGCGCCCGTGGCATCGCCGGCCC
CAGGGGCCTGGGCTGGCGGCCTGCAGAGGGTCGGGCCGATGGGCGGCGGA
CGGGCCGCGGCGAGCAGATGCGAGGCCATGTTCTTCGCAGCCCTGGTGCA
CCACTGCGGCCTGGGCCCCGCTGCAGAGGCGGCGGGCAGGGCGGCGGCAG
CCGCTGCGGCAGCGAAGGGGCAGGAGCAGGAGAAGGGCCCTGCAGCTGGA
AGGTTTCGTTCCGACCCCGCCCCTTCCGCGCTTGCATCTACCGCTGTCGC
CGCCGCTGCCAGCGCCGCCGCCGGAGAGCATGGGGGGGCGCGGCTCCATG
AGCTCTGGCTGCGCGTGGGTGAGCTGCGTAGGTGGCTGCTGCGCAACAAG
CACGCCCTGGCCGCCACCGGCCCTGTGTTGGGCCCGGGGAGCCCCGGCGC
TCCTGCGGGGTCGACCGGCGGCCCCGGATCACCGTCGCCTGCCAGTGAGC
CAGGATTGGGCCCGAGCTCGGGCCTGGGCCCGGCAGCAGCGATGGCAGCC
CCGCCGCGGACCTTCAGCCAGCTCCTCGGCCAGGCGGAGGAGCGGGCACA
TTTCCTCCTCGGGCTGGAGCCGGCCTGGGGGGCGCAGGGTGAAGGTGACG
GCGGCGACAGGGAGGAGATGAGGGGAGCGGAGACAGTGGAGGGAGCTGAG
GTGCTCTCTGCGGCTGCCGTTGCGCTCGTGACGTGGCTCGAGGCGGCGCC
CGTGGCATCGCCGGCCCCAGGGGCCTGGGCTGGCGGCCTGCAGAGGGTCG
GGCCGATGGGCGGCGGACGGGCCGCGGCGAGCAGATGCGAGGCCATGTTC
TTCGCAGCCCTGGTGCACCACTGCGGCCTGGGCCCCGCTGCAGAGGCGGC
GGGCAGGGCGGCGGCAGCCGCTGCGGCAGCGAAGGGGCAGGAGCAGGAGA
AGGGCCCTGCAGCTGGAAGGTTTCGTTCCGACCCCGCCCCTTCCGCGCTT
GCATCTACCGCTGTCGCCGCCGCTGCCAGCGCCGCCGCCGGAGAGCATGG
GGGGGCGCGGCTCCATGAGCTCTGGCTGCGCGTGGGTGAGCTGCGTAGGT
GGCTGCTGCGCAACAAGCACGCCCTGGCCGCCACCGGCCCTGTGTTGGGC
CCGGGGAGCCCCGGCGCTCCTGCGGGGTCGACCGGCGGCCCCGGATCACC
GTCGCCTGCCAGTGAGCCAGGATTGGGCCCGAGCTCGGGCCTGGGCCCGG
CAGCAGCGATGGCAGCCCCGCCGCGGACCTTCAGCCAGCTCCTCGGCCAG
GCGGAGGAGCGGGCACATTTCCTCCTCGGGCTGGAGCCGGCCTGGGGGGC
GCAGGGTGAAGGTGACGGCGGCGACAGGGAGGAG
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