mRNA_S-ischiensis_contig1.1094.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1094.1
Unique NamemRNA_S-ischiensis_contig1.1094.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A8K1FMX5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMX5_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 2.130e-13
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    1 SFLYPAVSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGGAPPAP 243
            S L P VS++ ++D V++R  G+ GST ++ W  D+   T S AGR    L+AG PV  +E+EL PWL SP + GG   AP
Sbjct: 1627 SALTPGVSIYGSQDVVQIRPSGIEGSTLRVHWLLDMHNSTASVAGRFAGTLIAGHPVDSVEEELLPWLQSPLLSGGIHMAP 1707
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A484EBI2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBI2_BRELC)

HSP 1 Score: 71.6 bits (174), Expect = 2.580e-12
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   13 PAVSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            PAVSL+  +D ++VR  G+  ST ++ W  DL     S AGR+ + L+AG PV  +E+EL PWL SP + GG
Sbjct: 1718 PAVSLYGAQDVIQVRPSGIAKSTLRIHWLFDLHNSLASLAGRLASTLIAGHPVDGVEEELLPWLQSPLLSGG 1789
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: G5A2G8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2G8_PHYSP)

HSP 1 Score: 68.9 bits (167), Expect = 2.290e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGGAPPAP 243
            VSL+ ++D V+VR  G+  ST ++ W  DL     S AGR+ + L+AG PV  +E+EL PWL SP + GG   +P
Sbjct: 2494 VSLYGSQDVVQVRPSGIAKSTLRIHWLFDLHNSLASLAGRITSTLIAGHPVDGVEEELLPWLQSPLLSGGIAESP 2568
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A5D6YGA6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YGA6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.120e-11
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    7 LYPAVSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            L P VSL+  +D VE +  G+  ST ++ W  DL     S AGR+ + L+AG PV  +E+EL PWL SP + GG
Sbjct: 1796 LTPGVSLYGPQDVVETQPSGIAKSTLRIHWLADLHNSMASLAGRIASTLIAGHPVDGVEEELLPWLQSPLLSGG 1869
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A6A4FIG6_9STRA (UBA domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIG6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            VSL+ ++D V+VR+ G+  ST ++ W  DL  +  S AGR+ + L+AG PV  +E+EL  WL SP + GG
Sbjct:  269 VSLYGSQDVVQVRSSGIAKSTLRIHWLFDLHNLLASLAGRITSTLIAGHPVDGVEEELLAWLQSPLLSGG 338
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A6A3N6L5_9STRA (UBA domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N6L5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            VSL+ ++D V+VR+ G+  ST ++ W  DL  +  S AGR+ + L+AG PV  +E+EL  WL SP + GG
Sbjct:  678 VSLYGSQDVVQVRSSGIAKSTLRIHWLFDLHNLLASLAGRITSTLIAGHPVDGVEEELLAWLQSPLLSGG 747
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A6G0PDT4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PDT4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            VSL+ ++D V+VR+ G+  ST ++ W  DL  +  S AGR+ + L+AG PV  +E+EL  WL SP + GG
Sbjct:   85 VSLYGSQDVVQVRSSGIAKSTLRIHWLFDLHNLLASLAGRITSTLIAGHPVDGVEEELLAWLQSPLLSGG 154
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BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A6A3NE12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NE12_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            VSL+ ++D V+VR+ G+  ST ++ W  DL  +  S AGR+ + L+AG PV  +E+EL  WL SP + GG
Sbjct: 1399 VSLYGSQDVVQVRSSGIAKSTLRIHWLFDLHNLLASLAGRITSTLIAGHPVDGVEEELLAWLQSPLLSGG 1468
[Close]
BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A6G0LKD7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LKD7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            VSL+ ++D V+VR+ G+  ST ++ W  DL  +  S AGR+ + L+AG PV  +E+EL  WL SP + GG
Sbjct: 1399 VSLYGSQDVVQVRSSGIAKSTLRIHWLFDLHNLLASLAGRITSTLIAGHPVDGVEEELLAWLQSPLLSGG 1468
[Close]
BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Match: A0A6A3ZVF6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ZVF6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   19 VSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAALVAGEPVQPLEDELSPWLASPFMRGG 228
            VSL+ ++D V+VR+ G+  ST ++ W  DL  +  S AGR+ + L+AG PV  +E+EL  WL SP + GG
Sbjct: 1453 VSLYGSQDVVQVRSSGIAKSTLRIHWLFDLHNLLASLAGRITSTLIAGHPVDGVEEELLAWLQSPLLSGG 1522
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A8K1FMX5_PYTOL2.130e-1344.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EBI2_BRELC2.580e-1245.83Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G5A2G8_PHYSP2.290e-1144.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A5D6YGA6_9STRA3.120e-1144.59Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A4FIG6_9STRA1.070e-1044.29UBA domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3N6L5_9STRA1.070e-1044.29UBA domain-containing protein n=2 Tax=Phytophthora... [more]
A0A6G0PDT4_9STRA1.080e-1044.29Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3NE12_9STRA1.080e-1044.29Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6G0LKD7_9STRA1.080e-1044.29Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A6A3ZVF6_9STRA1.080e-1044.29Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7516606..7517602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog112098.XP_008615989.1
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815483.1807685-CDS-S-ischiensis_contig1:7516605..75166561622815483.1807685-CDS-S-ischiensis_contig1:7516605..7516656Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7516606..7516656 +
1695739727.262196-CDS-S-ischiensis_contig1:7516605..75166561695739727.262196-CDS-S-ischiensis_contig1:7516605..7516656Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7516606..7516656 +
1622815483.1957111-CDS-S-ischiensis_contig1:7517333..75176001622815483.1957111-CDS-S-ischiensis_contig1:7517333..7517600Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7517334..7517600 +
1695739727.2945805-CDS-S-ischiensis_contig1:7517333..75176001695739727.2945805-CDS-S-ischiensis_contig1:7517333..7517600Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7517334..7517600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1094.1prot_S-ischiensis_contig1.1094.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7516606..7517600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1094.1

>prot_S-ischiensis_contig1.1094.1 ID=prot_S-ischiensis_contig1.1094.1|Name=mRNA_S-ischiensis_contig1.1094.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
SFLYPAVSLHDNEDSVEVRAWGLCGSTRQLSWAHDLLKVTCSAAGRMCAA
LVAGEPVQPLEDELSPWLASPFMRGGAPPAPRLPEGAGGGRHGPSGSGRF
LQALAA
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mRNA from alignment at S-ischiensis_contig1:7516606..7517602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1094.1 ID=mRNA_S-ischiensis_contig1.1094.1|Name=mRNA_S-ischiensis_contig1.1094.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=997bp|location=Sequence derived from alignment at S-ischiensis_contig1:7516606..7517602+ (Schizocladia ischiensis KU_0333)
TCCTTCCTGTACCCTGCCGTGAGCCTTCATGACAACGAGGACAGCGTCGA
GGTACAGTGGATCACCATGGGGGGCTGTTGCAGTTGGTTGTCAGCGTAGC
ATGGACAGAATCAGTGGCATCGCTCTACCTTTGCTGGCGTCCGTATCGTA
TCGATGTTTCTCACGGGCCCGGTGGCGGGACAGTTCGAGGGCGGGGCCCT
TTGAGGCGAGACAACGGTTCTCCACCAGTCGAGTCAGACCCCTCGCTCGC
TGCCTCGTGTTGCTCCCCAAATGGTCAAGTCTGATGGTCACATATGGTCA
GCGGCAAAGGGGCCGCAGTCATGGGCGTTTCGACCATCGATGCTGGCTTC
GCAGGACAGACCCCACCGGTTGCCGGCATGCTGGACCCATTTACAGTGCA
AAATCTGACATGAACTTCACTCCCCCCCTCCCGCCCGGTTTTGCTACCAC
CCCTTTTCTGTCGGCGTATCGGCGGGTGCGGGCTTGTTCCTCAACTCTCC
AACGGGACCCGCACCACTGCTGCCAACCCACCACGTGCCGATGCGTGGCG
GCCTCCTGCCCGGTTGCCTATGGCTGCCTGCTTGCCTGCCTGCTCGCCTG
TCTGTCCTGCCCTGTCCGCCCCCAACCACTCCACCTGCCGGTGACCTGGC
CCTGGGGCTTGGTGTACGGGGGTGGGACCCCGGGGTGCTCGGATCTCGGG
CCGGCGATTTCTTGTTGGCTGGTCACAGGTGCGTGCGTGGGGCTTGTGTG
GGTCTACGCGGCAGCTCTCCTGGGCGCACGACCTGCTCAAGGTCACGTGC
TCTGCCGCCGGGCGGATGTGCGCGGCCTTGGTGGCCGGGGAACCGGTGCA
GCCTCTCGAGGACGAGCTGTCGCCCTGGCTCGCCAGCCCGTTCATGCGCG
GCGGGGCTCCGCCGGCGCCGCGTCTCCCCGAGGGAGCAGGGGGCGGTCGC
CATGGCCCCAGCGGCAGTGGTCGCTTCCTCCAGGCCTTGGCAGCTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7516606..7517602+

>mRNA_S-ischiensis_contig1.1094.1 ID=mRNA_S-ischiensis_contig1.1094.1|Name=mRNA_S-ischiensis_contig1.1094.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig1:7516606..7517602+ (Schizocladia ischiensis KU_0333)
TCCTTCCTGTACCCTGCCGTGAGCCTTCATGACAACGAGGACAGCGTCGA
GTCCTTCCTGTACCCTGCCGTGAGCCTTCATGACAACGAGGACAGCGTCG
AGGTGCGTGCGTGGGGCTTGTGTGGGTCTACGCGGCAGCTCTCCTGGGCG
CACGACCTGCTCAAGGTCACGTGCTCTGCCGCCGGGCGGATGTGCGCGGC
CTTGGTGGCCGGGGAACCGGTGCAGCCTCTCGAGGACGAGCTGTCGCCCT
GGCTCGCCAGCCCGTTCATGCGCGGCGGGGCTCCGCCGGCGCCGCGTCTC
CCCGAGGGAGCAGGGGGCGGTCGCCATGGCCCCAGCGGCAGTGGTCGCTT
CCTCCAGGCCTTGGCAGCTGTGCGTGCGTGGGGCTTGTGTGGGTCTACGC
GGCAGCTCTCCTGGGCGCACGACCTGCTCAAGGTCACGTGCTCTGCCGCC
GGGCGGATGTGCGCGGCCTTGGTGGCCGGGGAACCGGTGCAGCCTCTCGA
GGACGAGCTGTCGCCCTGGCTCGCCAGCCCGTTCATGCGCGGCGGGGCTC
CGCCGGCGCCGCGTCTCCCCGAGGGAGCAGGGGGCGGTCGCCATGGCCCC
AGCGGCAGTGGTCGCTTCCTCCAGGCCTTGGCAGCT
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