mRNA_S-ischiensis_contig1.1093.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1093.1
Unique NamemRNA_S-ischiensis_contig1.1093.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7514063..7516401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size950
Cds size948
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1093.1prot_S-ischiensis_contig1.1093.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7514063..7516401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.851209-CDS-S-ischiensis_contig1:7514062..75141821622815359.851209-CDS-S-ischiensis_contig1:7514062..7514182Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7514063..7514182 +
1695739659.3454847-CDS-S-ischiensis_contig1:7514062..75141821695739659.3454847-CDS-S-ischiensis_contig1:7514062..7514182Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7514063..7514182 +
1622815359.8651216-CDS-S-ischiensis_contig1:7515124..75152811622815359.8651216-CDS-S-ischiensis_contig1:7515124..7515281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7515125..7515281 +
1695739659.358471-CDS-S-ischiensis_contig1:7515124..75152811695739659.358471-CDS-S-ischiensis_contig1:7515124..7515281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7515125..7515281 +
1622815359.8764741-CDS-S-ischiensis_contig1:7515730..75164011622815359.8764741-CDS-S-ischiensis_contig1:7515730..7516401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7515731..7516401 +
1695739659.366362-CDS-S-ischiensis_contig1:7515730..75164011695739659.366362-CDS-S-ischiensis_contig1:7515730..7516401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7515731..7516401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1093.1

>prot_S-ischiensis_contig1.1093.1 ID=prot_S-ischiensis_contig1.1093.1|Name=mRNA_S-ischiensis_contig1.1093.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=316bp
ATGEVSFGGGSDSNRDGAYGRAYGAGDVVTMEVEISQADPATGLVSASLA
FFVNGQSQAAPFLWERLHQDRVLRPFVLLPVEGDTVRADAYVGPPAMADG
SAAVAASTFPRGVAAAAAATARPTALPSAADWLRDPEGGVCVSLARSGAF
PLADCLACDLPTHPPDPPLGNGGGGGDGGRMGAAPAPAASAPAAMGEGPA
GGAAVATVLSGSDPAWGTAIFEPAVRVRGAATDAQGPAWGGGVHSWDVRL
RRLSEGANVCVGVGAPGLDVNGALGAAGLGWGLLGSGILLWRRPAQAGGS
SGGGAAAIPGARLVHL
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mRNA from alignment at S-ischiensis_contig1:7514063..7516401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1093.1 ID=mRNA_S-ischiensis_contig1.1093.1|Name=mRNA_S-ischiensis_contig1.1093.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2339bp|location=Sequence derived from alignment at S-ischiensis_contig1:7514063..7516401+ (Schizocladia ischiensis KU_0333)
GCGACCGGGGAGGTCAGCTTCGGCGGGGGCTCGGACTCCAACCGTGATGG
CGCGTACGGACGTGCCTATGGCGCAGGGGACGTGGTGACAATGGAGGTGG
AGATCTCACAGGCGGACCCGGTGAGCTGGAGGCAGGAGGGAGGGAGGGAG
GGAGGGAGGTCCGTTGGGCATGTGGTCCATGGCGCACCGGGCGCTTGGAT
ATTCCCGACGCAACTTGCCCGGTTGTCTCAGCCCCTTTCACAAATCTTGC
GTTTTGAAAGGAAGATAGGCAAGCGAGTGGAAGAGTAGAGGTGTCTGTAC
CGTACTCATGCCTACTCCAGACTCCGAAATCTGCCCTGTGTGCCCCCCCC
CCCTGCACGAAACAGTCCACCGAACAGCCACCAGCATTGTTCGCTCCTCC
AGAAGACATGGTGCAGTGTGGCAGTGGTATATGCTTGCTGTAGTACAGTA
GCAGTCATTTTCTGTAGTACATGGCCGTAAGGCTACCCCGTATGGGGGCC
GACCCCCGGGCCAGCACGGAGTATACTGGCTCGAGTCGGTGGCAAGCACA
GGATGGGATCCTCACCCGCCATGAGTACACACACACCCTCCCACCCTGGC
TCTGCCAGGGGAGGGAGGGGGCCTGCTCCATCTCGATCGAGGCGCGTGGT
CAATGGTCTCGGGACTACGGCTAGCCCACCGTGAGTACATATATATATAT
ATACATACGTAAATGTACTTCGGGACGCACAGTAGCTCGTAACGGGGCTA
GGGGGTCAATGCTCATGCGGCAAGCAACTCACAAATACCACCCCTCGCTC
ACGTGCACACACACAAACACACACACACACACACACACACACACACACCA
CCCGCCCCGGCTCCCAACTCACCCAGCACACCCACCCCCCCCATCTCGTC
GTGGCTGGGCGCTGCGTACACCAACGCCACTTGCGCACATGTTGTGCCGT
GGCCTTTGGGGCGGTGGTGTTGGACATGTCATCCTTTCTGGCCGTGGTGG
CGGCGGGGACGTCGGCCTCTGTGTGTACACGGTCGATGCCGCTTGAACTG
GAACGAAAACAGGCCACGGGGCTTGTATCAGCATCGCTGGCCTTTTTCGT
GAACGGCCAGTCCCAGGCGGCGCCCTTCTTGTGGGAGCGGCTACACCAGG
ACCGCGTCCTGCGCCCCTTCGTGCTTCTGCCGGTGGAAGGCGACACTGTG
CGTGCAGACGCGTACGTCGGTGAGTGATAGGGGAGGAAGGGGGGCAGGGA
AGGAGGGAAGGAAGGTCCAGCAACGTCGCTATTCTATGTCTGCCTACAGT
ACGTACTTGGGAAGTACTTGCTTGAACGTACGTACTCGTACAGTACTCGA
AGTGCTGCACTATGTAGTGCTTCAGACTCAGTCAAATGATATGGGACTAC
GGCGAGCACACAAAGAGGGCGTGCTCATGTGCTCTATAGAGTATTCCGAG
TATGTAGAGTACTTCGTATAATATTTGAAAAGAACGGAAGCGGGCAGGCA
CTGCGCAAGATGGTGTTCGTTGAACCGCATCGCTCGGACCCCGCACGCCA
CGCAACCTGCTCCGGCACTCAACTCCACCTGGCAGGATCTGCGTGCACAC
ACGTCACGCAATATAGAAAGGATGCCCGTTACAGCCGTCTACCCCCCCCG
TGACAACCGAACCTTCAGGCCCACCAGCCATGGCGGACGGCTCCGCCGCG
GTGGCAGCAAGCACATTCCCCCGAGGGGTGGCGGCCGCCGCGGCAGCCAC
CGCCCGCCCCACGGCTCTGCCGTCTGCGGCGGACTGGCTGCGGGACCCCG
AGGGCGGAGTGTGCGTGTCTCTAGCGCGCAGCGGGGCCTTCCCGCTGGCC
GATTGCCTGGCCTGTGACCTGCCCACGCACCCACCAGACCCGCCCCTTGG
CAACGGAGGAGGAGGCGGCGACGGCGGCCGCATGGGAGCAGCACCAGCAC
CGGCAGCATCTGCGCCAGCAGCAATGGGAGAGGGACCCGCGGGGGGAGCC
GCCGTCGCCACCGTCCTCTCCGGGAGCGACCCAGCCTGGGGCACAGCCAT
CTTTGAGCCCGCCGTCCGCGTCCGCGGCGCCGCCACCGATGCTCAGGGTC
CCGCCTGGGGAGGCGGTGTGCACAGCTGGGACGTTCGGCTGCGCCGCCTG
TCAGAGGGGGCCAACGTGTGCGTCGGGGTCGGCGCCCCAGGCCTGGACGT
TAACGGAGCCCTGGGTGCCGCCGGCCTCGGCTGGGGCCTCCTGGGCAGCG
GCATTCTCCTGTGGCGGCGACCCGCCCAGGCCGGTGGCAGCAGCGGGGGG
GGTGCGGCAGCGATCCCGGGAGCTCGTCTGGTGCACCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7514063..7516401+

>mRNA_S-ischiensis_contig1.1093.1 ID=mRNA_S-ischiensis_contig1.1093.1|Name=mRNA_S-ischiensis_contig1.1093.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1896bp|location=Sequence derived from alignment at S-ischiensis_contig1:7514063..7516401+ (Schizocladia ischiensis KU_0333)
GCGACCGGGGAGGTCAGCTTCGGCGGGGGCTCGGACTCCAACCGTGATGG
CGCGTACGGACGTGCCTATGGCGCAGGGGACGTGGTGACAATGGAGGTGG
AGATCTCACAGGCGGACCCGGCGACCGGGGAGGTCAGCTTCGGCGGGGGC
TCGGACTCCAACCGTGATGGCGCGTACGGACGTGCCTATGGCGCAGGGGA
CGTGGTGACAATGGAGGTGGAGATCTCACAGGCGGACCCGGCCACGGGGC
TTGTATCAGCATCGCTGGCCTTTTTCGTGAACGGCCAGTCCCAGGCGGCG
CCCTTCTTGTGGGAGCGGCTACACCAGGACCGCGTCCTGCGCCCCTTCGT
GCTTCTGCCGGTGGAAGGCGACACTGTGCGTGCAGACGCGTACGTCGGCC
ACGGGGCTTGTATCAGCATCGCTGGCCTTTTTCGTGAACGGCCAGTCCCA
GGCGGCGCCCTTCTTGTGGGAGCGGCTACACCAGGACCGCGTCCTGCGCC
CCTTCGTGCTTCTGCCGGTGGAAGGCGACACTGTGCGTGCAGACGCGTAC
GTCGGCCCACCAGCCATGGCGGACGGCTCCGCCGCGGTGGCAGCAAGCAC
ATTCCCCCGAGGGGTGGCGGCCGCCGCGGCAGCCACCGCCCGCCCCACGG
CTCTGCCGTCTGCGGCGGACTGGCTGCGGGACCCCGAGGGCGGAGTGTGC
GTGTCTCTAGCGCGCAGCGGGGCCTTCCCGCTGGCCGATTGCCTGGCCTG
TGACCTGCCCACGCACCCACCAGACCCGCCCCTTGGCAACGGAGGAGGAG
GCGGCGACGGCGGCCGCATGGGAGCAGCACCAGCACCGGCAGCATCTGCG
CCAGCAGCAATGGGAGAGGGACCCGCGGGGGGAGCCGCCGTCGCCACCGT
CCTCTCCGGGAGCGACCCAGCCTGGGGCACAGCCATCTTTGAGCCCGCCG
TCCGCGTCCGCGGCGCCGCCACCGATGCTCAGGGTCCCGCCTGGGGAGGC
GGTGTGCACAGCTGGGACGTTCGGCTGCGCCGCCTGTCAGAGGGGGCCAA
CGTGTGCGTCGGGGTCGGCGCCCCAGGCCTGGACGTTAACGGAGCCCTGG
GTGCCGCCGGCCTCGGCTGGGGCCTCCTGGGCAGCGGCATTCTCCTGTGG
CGGCGACCCGCCCAGGCCGGTGGCAGCAGCGGGGGGGGTGCGGCAGCGAT
CCCGGGAGCTCGTCTGGTGCACCTGGCCCACCAGCCATGGCGGACGGCTC
CGCCGCGGTGGCAGCAAGCACATTCCCCCGAGGGGTGGCGGCCGCCGCGG
CAGCCACCGCCCGCCCCACGGCTCTGCCGTCTGCGGCGGACTGGCTGCGG
GACCCCGAGGGCGGAGTGTGCGTGTCTCTAGCGCGCAGCGGGGCCTTCCC
GCTGGCCGATTGCCTGGCCTGTGACCTGCCCACGCACCCACCAGACCCGC
CCCTTGGCAACGGAGGAGGAGGCGGCGACGGCGGCCGCATGGGAGCAGCA
CCAGCACCGGCAGCATCTGCGCCAGCAGCAATGGGAGAGGGACCCGCGGG
GGGAGCCGCCGTCGCCACCGTCCTCTCCGGGAGCGACCCAGCCTGGGGCA
CAGCCATCTTTGAGCCCGCCGTCCGCGTCCGCGGCGCCGCCACCGATGCT
CAGGGTCCCGCCTGGGGAGGCGGTGTGCACAGCTGGGACGTTCGGCTGCG
CCGCCTGTCAGAGGGGGCCAACGTGTGCGTCGGGGTCGGCGCCCCAGGCC
TGGACGTTAACGGAGCCCTGGGTGCCGCCGGCCTCGGCTGGGGCCTCCTG
GGCAGCGGCATTCTCCTGTGGCGGCGACCCGCCCAGGCCGGTGGCAGCAG
CGGGGGGGGTGCGGCAGCGATCCCGGGAGCTCGTCTGGTGCACCTG
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