mRNA_S-ischiensis_contig1.1089.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1089.1
Unique NamemRNA_S-ischiensis_contig1.1089.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7510436..7511840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size446
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.7253048-CDS-S-ischiensis_contig1:7510435..75104891622815359.7253048-CDS-S-ischiensis_contig1:7510435..7510489Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7510436..7510489 +
1695739659.2897406-CDS-S-ischiensis_contig1:7510435..75104891695739659.2897406-CDS-S-ischiensis_contig1:7510435..7510489Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7510436..7510489 +
1622815359.73699-CDS-S-ischiensis_contig1:7511450..75118401622815359.73699-CDS-S-ischiensis_contig1:7511450..7511840Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7511451..7511840 +
1695739659.3005376-CDS-S-ischiensis_contig1:7511450..75118401695739659.3005376-CDS-S-ischiensis_contig1:7511450..7511840Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7511451..7511840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1089.1prot_S-ischiensis_contig1.1089.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7510436..7511840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1089.1

>prot_S-ischiensis_contig1.1089.1 ID=prot_S-ischiensis_contig1.1089.1|Name=mRNA_S-ischiensis_contig1.1089.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
EGRGGRDVTPAGSLGGSWVVYAPYCVETSHKCLAHLCDLLCDPWGRGGGP
ILKGGRSRQRSRAAALRPVLQLLRANLTALRGSALPTAAADEGGSSGGPG
LDGNVAAAAVAAAARGVMARLRKALRALLRDMEGTQTPFPLGGDRHEA
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mRNA from alignment at S-ischiensis_contig1:7510436..7511840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1089.1 ID=mRNA_S-ischiensis_contig1.1089.1|Name=mRNA_S-ischiensis_contig1.1089.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1405bp|location=Sequence derived from alignment at S-ischiensis_contig1:7510436..7511840+ (Schizocladia ischiensis KU_0333)
GAGGGCCGGGGCGGCCGAGATGTCACCCCGGCAGGAAGCCTCGGCGGCAG
CTGGGTGAGTGAACAGACGGCCGACCACTGCGCCGTCAGTGCTGCGCTTG
CCCTTCCACGGGTCTGTGCGGCTTGGGGTGCCTGCCCCATCTGCCCCCGG
GGTGCTGCGAAGGGATGCCGATGCTGTGTTCTCTATCTTACTTGGAAGTA
CATGCACCCCGTCCCGGCGGGGAGAGGGCTGAGGCTTTCCTGGGGGCCAA
GGGTTGACTCTTTTTCTCCTGCTGCATTGCTAGTAATACTTCCGGAAGTA
GTACATACTGTAGTAGAGAGGTGCGCACGCAGGCAAACGAAAACCCTATC
ACCCCATGTGCCACTGGTGGACGACGGTCAAGTGCGTGCGAGTCAGGCCG
CCGAGTTTTCGCGCCGAAGCTGGTCCCATCCGCCCGCTCCCAATCCCCCC
CGCCACCCCTCCCTTCCCCCCCTGCCGCCACCGGCCAACGTTTTTTTTTC
TGTGGGGCCCAGGGAACATGAACCTCCAATACCGTGGACTGTGTGCATGC
TTGCATGTGCACTACTGTACAACTGTGCAGTACAGTACTGTAGTGTAGTA
CTTGTAGTACAGTACTTTGCAACTGTACAGTGCAGTAGTAGAGCACTTCC
GGAAGAGTACAGTAGTATACTCGTATACATACACTCGAGTACTCACGTTG
TGCATGCCGCAGTCCCGAGACCATTGACCACGCGCCTCGGTCGAGACGGA
GTAGTCAGTAGTACTGTTGTAAATCATCCCCTACTATGTACGCTCTCTCG
CTCGGACAACCTACTTGTTATATGTGCACATGCGTGCACGCGCCCCCGTC
CGCCCGCCTCCCACCCCATCTGACCCTGTTCGCCACCACGGCCGCCACCG
CCCCCGCCACTGCGCGGCCGGAGGGCTGGACCGCCAGGGCCTACTACTGT
AGGCACCGCATGTGCTGCTCGCCCGCTCACTGATCTTGTAATCACCAATC
CCCCTGCGGCGGCAGGTGGTGTACGCGCCCTACTGTGTGGAGACGTCCCA
CAAGTGCCTGGCCCACCTGTGCGACCTGCTCTGCGACCCATGGGGGCGTG
GCGGCGGGCCCATCCTGAAGGGAGGCCGCAGCCGCCAGCGCTCCCGGGCG
GCCGCCCTGCGGCCTGTGCTGCAGCTGTTGAGAGCAAACCTGACCGCACT
GAGGGGGTCCGCCCTCCCCACCGCCGCCGCTGATGAGGGAGGCAGCTCGG
GAGGGCCGGGGCTGGACGGGAATGTTGCAGCAGCGGCAGTGGCAGCAGCG
GCCAGGGGGGTGATGGCAAGGCTCCGCAAGGCTCTCCGCGCCTTGCTACG
GGATATGGAGGGGACGCAAACACCCTTTCCCCTCGGTGGGGACAGGCACG
AGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7510436..7511840+

>mRNA_S-ischiensis_contig1.1089.1 ID=mRNA_S-ischiensis_contig1.1089.1|Name=mRNA_S-ischiensis_contig1.1089.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig1:7510436..7511840+ (Schizocladia ischiensis KU_0333)
GAGGGCCGGGGCGGCCGAGATGTCACCCCGGCAGGAAGCCTCGGCGGCAG
CTGGGAGGGCCGGGGCGGCCGAGATGTCACCCCGGCAGGAAGCCTCGGCG
GCAGCTGGGTGGTGTACGCGCCCTACTGTGTGGAGACGTCCCACAAGTGC
CTGGCCCACCTGTGCGACCTGCTCTGCGACCCATGGGGGCGTGGCGGCGG
GCCCATCCTGAAGGGAGGCCGCAGCCGCCAGCGCTCCCGGGCGGCCGCCC
TGCGGCCTGTGCTGCAGCTGTTGAGAGCAAACCTGACCGCACTGAGGGGG
TCCGCCCTCCCCACCGCCGCCGCTGATGAGGGAGGCAGCTCGGGAGGGCC
GGGGCTGGACGGGAATGTTGCAGCAGCGGCAGTGGCAGCAGCGGCCAGGG
GGGTGATGGCAAGGCTCCGCAAGGCTCTCCGCGCCTTGCTACGGGATATG
GAGGGGACGCAAACACCCTTTCCCCTCGGTGGGGACAGGCACGAGGCGGT
GGTGTACGCGCCCTACTGTGTGGAGACGTCCCACAAGTGCCTGGCCCACC
TGTGCGACCTGCTCTGCGACCCATGGGGGCGTGGCGGCGGGCCCATCCTG
AAGGGAGGCCGCAGCCGCCAGCGCTCCCGGGCGGCCGCCCTGCGGCCTGT
GCTGCAGCTGTTGAGAGCAAACCTGACCGCACTGAGGGGGTCCGCCCTCC
CCACCGCCGCCGCTGATGAGGGAGGCAGCTCGGGAGGGCCGGGGCTGGAC
GGGAATGTTGCAGCAGCGGCAGTGGCAGCAGCGGCCAGGGGGGTGATGGC
AAGGCTCCGCAAGGCTCTCCGCGCCTTGCTACGGGATATGGAGGGGACGC
AAACACCCTTTCCCCTCGGTGGGGACAGGCACGAGGCG
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